Literature DB >> 22807892

(2E)-2-(4-Hy-droxy-3-meth-oxy-benzyl-idene)hydrazinecarboxamide.

M Nawaz Tahir, Akbar Ali, M Naveed Umar, Ishtiaq Hussain, Hazoor Ahmad Shad.   

Abstract

In the title compound, C(9)H(11)N(3)O(3), two mol-ecules are present in the asymmetric unit in which the 4-hy-droxy-3-meth-oxy-benzaldehyde and hydrazinecarboxamide units are almost planar [with r.m.s. deviations 0.0212 and 0.0066 Å, respectively, in one mol-ecule and 0.0346 and 0.0095 Å, respectively, in the other] and are oriented at dihedral angles of 9.7 (3) and 16.6 (3)°. In both mol-ecules, two S(5) ring motifs are present due to N-H⋯N and O-H⋯O hydrogen bonds. In the crystal, the mol-ecules are dimerized with each other due to pairs of N-H⋯O hydrogen bonds, forming an R(2) (2)(8) ring motif. O-H⋯O hydrogen bonds lead to the formation of a three-dimensional network.

Entities:  

Year:  2012        PMID: 22807892      PMCID: PMC3393335          DOI: 10.1107/S1600536812025299

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Tahir et al. (2012 ▶). For graph–set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C9H11N3O3 M = 209.21 Orthorhombic, a = 13.9945 (14) Å b = 5.0440 (4) Å c = 27.286 (2) Å V = 1926.0 (3) Å3 Z = 8 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.30 × 0.16 × 0.14 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.957, T max = 0.966 8297 measured reflections 1931 independent reflections 1046 reflections with I > 2σ(I) R int = 0.081

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.113 S = 0.98 1931 reflections 275 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812025299/bq2364sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812025299/bq2364Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812025299/bq2364Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H11N3O3F(000) = 880
Mr = 209.21Dx = 1.443 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 2704 reflections
a = 13.9945 (14) Åθ = 1.8–26.0°
b = 5.0440 (4) ŵ = 0.11 mm1
c = 27.286 (2) ÅT = 296 K
V = 1926.0 (3) Å3Needle, colorless
Z = 80.30 × 0.16 × 0.14 mm
Bruker Kappa APEXII CCD diffractometer1931 independent reflections
Radiation source: fine-focus sealed tube1046 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.081
Detector resolution: 8.00 pixels mm-1θmax = 26.0°, θmin = 2.9°
ω scansh = −17→17
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −3→6
Tmin = 0.957, Tmax = 0.966l = −33→33
8297 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.039P)2] where P = (Fo2 + 2Fc2)/3
1931 reflections(Δ/σ)max < 0.001
275 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.1256 (3)−0.4282 (10)0.51673 (17)0.051 (2)
O20.3120 (3)−0.4570 (10)0.52664 (17)0.0437 (19)
O3−0.0668 (3)0.7125 (10)0.3095 (2)0.0423 (16)
N10.0730 (4)0.3033 (11)0.38554 (19)0.035 (2)
N20.0463 (3)0.5085 (12)0.3552 (2)0.041 (2)
N3−0.1032 (4)0.3268 (12)0.3479 (2)0.048 (2)
C10.1988 (4)0.0965 (14)0.4299 (2)0.031 (3)
C20.1392 (5)−0.0745 (13)0.4553 (3)0.035 (3)
C30.1765 (4)−0.2580 (13)0.4879 (2)0.031 (3)
C40.2739 (5)−0.2735 (12)0.4950 (2)0.031 (2)
C50.3343 (4)−0.1063 (13)0.4703 (2)0.039 (3)
C60.2965 (4)0.0792 (13)0.4384 (2)0.037 (3)
C70.0252 (4)−0.4398 (15)0.5100 (3)0.049 (3)
C80.1602 (5)0.2916 (13)0.3966 (2)0.032 (2)
C9−0.0445 (4)0.5255 (14)0.3362 (2)0.031 (2)
O4−0.0199 (3)0.9504 (9)0.10503 (17)0.0413 (16)
O5−0.2032 (3)0.8811 (10)0.08760 (18)0.049 (2)
O60.2021 (3)−0.1888 (9)0.31097 (17)0.0430 (17)
N40.0595 (3)0.2198 (10)0.23612 (18)0.0307 (17)
N50.0884 (4)0.0189 (11)0.2668 (2)0.040 (2)
N60.2384 (4)0.1926 (10)0.2705 (2)0.044 (2)
C10−0.0733 (4)0.4019 (13)0.1914 (2)0.031 (2)
C11−0.0188 (4)0.5961 (13)0.1670 (2)0.029 (2)
C12−0.0626 (5)0.7582 (13)0.1326 (2)0.030 (2)
C13−0.1603 (4)0.7257 (13)0.1226 (2)0.032 (3)
C14−0.2137 (5)0.5398 (14)0.1471 (3)0.038 (3)
C15−0.1697 (4)0.3796 (13)0.1809 (2)0.035 (2)
C160.0808 (4)0.9841 (14)0.1099 (3)0.045 (3)
C17−0.0297 (4)0.2151 (12)0.2254 (2)0.030 (2)
C180.1785 (5)0.0009 (15)0.2845 (2)0.033 (2)
H20.07352−0.065910.450480.0424*
H2A0.26884−0.545910.538600.0649*
H2B0.087470.628920.347950.0490*
H3A−0.160590.324390.336560.0569*
H3B−0.083720.201240.366680.0569*
H50.40001−0.117470.474860.0464*
H60.337400.195150.422240.0444*
H7A0.01136−0.490860.476850.0593*
H7B−0.00207−0.268640.516420.0593*
H7C−0.00159−0.567600.532130.0593*
H80.201660.414330.382650.0377*
H5A−0.166230.998470.079090.0729*
H5B0.04750−0.100200.275100.0479*
H6A0.297090.189080.279880.0534*
H6B0.218350.319470.252170.0534*
H110.045950.615460.173850.0351*
H14−0.278770.522690.140880.0458*
H15−0.205770.252490.197300.0421*
H16A0.112460.819830.102660.0675*
H16B0.095611.037010.142840.0675*
H16C0.102261.118260.087490.0675*
H17−0.068190.087110.239960.0368*
U11U22U33U12U13U23
O10.028 (3)0.070 (4)0.055 (4)−0.003 (3)−0.004 (3)0.032 (3)
O20.030 (3)0.052 (4)0.049 (3)0.005 (2)−0.003 (2)0.013 (3)
O30.028 (2)0.039 (3)0.060 (3)0.000 (2)−0.011 (2)0.016 (3)
N10.031 (3)0.031 (4)0.042 (4)0.001 (3)−0.010 (3)0.012 (3)
N20.024 (3)0.036 (4)0.062 (4)−0.005 (3)−0.013 (3)0.013 (3)
N30.026 (3)0.055 (5)0.062 (4)−0.003 (3)−0.010 (3)0.020 (4)
C10.025 (4)0.038 (5)0.030 (4)0.000 (3)0.001 (3)0.005 (3)
C20.029 (4)0.037 (5)0.040 (4)0.007 (4)−0.007 (3)0.001 (4)
C30.029 (4)0.039 (5)0.026 (4)0.000 (3)0.003 (3)0.003 (3)
C40.036 (4)0.033 (4)0.023 (4)0.010 (4)−0.005 (3)−0.002 (3)
C50.024 (4)0.039 (5)0.054 (5)0.001 (3)−0.004 (3)0.007 (4)
C60.029 (4)0.033 (5)0.049 (5)−0.002 (3)0.003 (3)0.007 (4)
C70.027 (4)0.074 (6)0.047 (5)−0.009 (4)−0.003 (4)0.006 (4)
C80.033 (4)0.032 (4)0.030 (4)−0.005 (4)0.003 (3)0.000 (3)
C90.023 (4)0.032 (4)0.038 (4)0.001 (3)0.002 (3)−0.005 (4)
O40.026 (2)0.045 (3)0.053 (3)0.002 (2)0.004 (2)0.018 (3)
O50.036 (3)0.056 (4)0.054 (4)0.008 (3)−0.008 (3)0.023 (3)
O60.037 (3)0.037 (3)0.055 (3)0.006 (2)−0.013 (3)0.016 (3)
N40.033 (3)0.032 (3)0.027 (3)0.001 (3)−0.003 (2)0.008 (3)
N50.037 (3)0.035 (4)0.048 (4)−0.008 (3)−0.009 (3)0.019 (3)
N60.028 (3)0.041 (4)0.064 (5)−0.004 (3)−0.007 (3)0.011 (3)
C100.035 (4)0.033 (4)0.024 (4)−0.001 (4)−0.006 (3)−0.004 (3)
C110.023 (3)0.038 (4)0.027 (4)−0.001 (3)−0.003 (3)−0.001 (4)
C120.031 (4)0.025 (4)0.035 (4)−0.002 (3)−0.001 (3)−0.002 (3)
C130.029 (4)0.040 (5)0.027 (4)0.006 (4)−0.002 (3)0.005 (4)
C140.022 (3)0.050 (5)0.043 (5)0.000 (4)−0.005 (3)−0.001 (4)
C150.026 (3)0.039 (4)0.041 (4)−0.006 (4)0.001 (3)0.012 (4)
C160.027 (4)0.052 (5)0.056 (6)−0.008 (4)0.000 (4)0.005 (4)
C170.027 (4)0.031 (4)0.033 (4)0.004 (3)−0.007 (3)0.004 (3)
C180.030 (4)0.032 (4)0.038 (4)−0.004 (4)−0.002 (3)−0.005 (4)
O1—C31.365 (8)C1—C81.444 (9)
O1—C71.418 (7)C2—C31.386 (9)
O2—C41.373 (8)C3—C41.379 (9)
O3—C91.232 (8)C4—C51.371 (9)
O2—H2A0.8200C5—C61.383 (8)
O4—C121.365 (8)C2—H20.9300
O4—C161.426 (7)C5—H50.9300
O5—C131.374 (8)C6—H60.9300
O6—C181.244 (8)C7—H7C0.9600
O5—H5A0.8200C7—H7A0.9600
N1—C81.259 (9)C7—H7B0.9600
N1—N21.377 (8)C8—H80.9300
N2—C91.375 (7)C10—C111.409 (9)
N3—C91.335 (9)C10—C151.384 (8)
N2—H2B0.8600C10—C171.456 (8)
N3—H3B0.8600C11—C121.388 (9)
N3—H3A0.8600C12—C131.404 (9)
N4—N51.375 (7)C13—C141.373 (9)
N4—C171.282 (7)C14—C151.372 (10)
N5—C181.353 (9)C11—H110.9300
N6—C181.336 (9)C14—H140.9300
N5—H5B0.8600C15—H150.9300
N6—H6B0.8600C16—H16A0.9600
N6—H6A0.8600C16—H16B0.9600
C1—C21.386 (9)C16—H16C0.9600
C1—C61.390 (8)C17—H170.9300
C3—O1—C7117.9 (5)C5—C6—H6119.00
C4—O2—H2A109.00H7A—C7—H7C109.00
C12—O4—C16117.8 (5)H7A—C7—H7B109.00
C13—O5—H5A109.00O1—C7—H7B109.00
N2—N1—C8116.3 (5)O1—C7—H7C109.00
N1—N2—C9121.6 (5)O1—C7—H7A109.00
C9—N2—H2B119.00H7B—C7—H7C110.00
N1—N2—H2B119.00C1—C8—H8119.00
C9—N3—H3A120.00N1—C8—H8118.00
H3A—N3—H3B120.00C11—C10—C15119.1 (5)
C9—N3—H3B120.00C15—C10—C17119.2 (5)
N5—N4—C17114.3 (5)C11—C10—C17121.6 (5)
N4—N5—C18122.7 (5)C10—C11—C12119.4 (5)
C18—N5—H5B119.00C11—C12—C13119.5 (6)
N4—N5—H5B119.00O4—C12—C11126.7 (6)
H6A—N6—H6B120.00O4—C12—C13113.7 (5)
C18—N6—H6A120.00O5—C13—C14119.4 (5)
C18—N6—H6B120.00O5—C13—C12119.6 (5)
C2—C1—C6118.0 (6)C12—C13—C14121.0 (6)
C2—C1—C8120.9 (6)C13—C14—C15119.0 (6)
C6—C1—C8121.1 (6)C10—C15—C14121.9 (6)
C1—C2—C3120.7 (6)N4—C17—C10122.8 (5)
O1—C3—C2126.4 (5)N5—C18—N6115.7 (6)
C2—C3—C4120.0 (6)O6—C18—N5120.4 (6)
O1—C3—C4113.5 (5)O6—C18—N6123.8 (6)
O2—C4—C5119.0 (6)C10—C11—H11120.00
O2—C4—C3120.7 (6)C12—C11—H11120.00
C3—C4—C5120.4 (6)C13—C14—H14120.00
C4—C5—C6119.3 (5)C15—C14—H14120.00
C1—C6—C5121.6 (6)C10—C15—H15119.00
N1—C8—C1123.1 (6)C14—C15—H15119.00
O3—C9—N2120.3 (6)O4—C16—H16A110.00
N2—C9—N3115.6 (6)O4—C16—H16B109.00
O3—C9—N3124.1 (5)O4—C16—H16C110.00
C3—C2—H2120.00H16A—C16—H16B109.00
C1—C2—H2120.00H16A—C16—H16C109.00
C6—C5—H5120.00H16B—C16—H16C109.00
C4—C5—H5120.00N4—C17—H17119.00
C1—C6—H6119.00C10—C17—H17119.00
C7—O1—C3—C26.5 (9)O1—C3—C4—O23.3 (8)
C7—O1—C3—C4−176.1 (6)O1—C3—C4—C5−177.0 (5)
C16—O4—C12—C112.9 (9)C2—C3—C4—C50.6 (9)
C16—O4—C12—C13−175.3 (6)C3—C4—C5—C60.4 (9)
C8—N1—N2—C9172.7 (6)O2—C4—C5—C6−180.0 (5)
N2—N1—C8—C1176.9 (5)C4—C5—C6—C1−1.5 (9)
N1—N2—C9—N3−2.0 (8)C15—C10—C11—C12−0.8 (9)
N1—N2—C9—O3179.3 (6)C17—C10—C11—C12175.9 (6)
C17—N4—N5—C18−175.8 (6)C11—C10—C15—C140.5 (9)
N5—N4—C17—C10−176.6 (5)C17—C10—C15—C14−176.2 (6)
N4—N5—C18—O6−177.8 (5)C11—C10—C17—N41.8 (9)
N4—N5—C18—N60.3 (9)C15—C10—C17—N4178.5 (6)
C6—C1—C8—N1175.4 (6)C10—C11—C12—O4−178.3 (6)
C2—C1—C6—C51.5 (9)C10—C11—C12—C13−0.2 (9)
C6—C1—C2—C3−0.4 (10)O4—C12—C13—O50.2 (8)
C8—C1—C2—C3−178.8 (6)O4—C12—C13—C14179.8 (6)
C8—C1—C6—C5179.8 (6)C11—C12—C13—O5−178.2 (5)
C2—C1—C8—N1−6.3 (10)C11—C12—C13—C141.4 (9)
C1—C2—C3—C4−0.6 (10)O5—C13—C14—C15178.0 (6)
C1—C2—C3—O1176.7 (6)C12—C13—C14—C15−1.7 (10)
C2—C3—C4—O2−179.0 (6)C13—C14—C15—C100.7 (10)
D—H···AD—HH···AD···AD—H···A
O2—H2A···O10.822.172.627 (6)115
O2—H2A···O5i0.822.343.108 (7)156
N2—H2B···O6ii0.862.112.923 (7)158
N3—H3A···O6iii0.862.162.987 (7)162
N3—H3B···N10.862.312.674 (8)106
O5—H5A···O40.822.182.632 (6)115
N5—H5B···O3iv0.862.082.909 (7)161
N6—H6A···O3v0.862.132.965 (7)164
N6—H6B···N40.862.322.677 (7)105
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2A⋯O10.822.172.627 (6)115
O2—H2A⋯O5i 0.822.343.108 (7)156
N2—H2B⋯O6ii 0.862.112.923 (7)158
N3—H3A⋯O6iii 0.862.162.987 (7)162
N3—H3B⋯N10.862.312.674 (8)106
O5—H5A⋯O40.822.182.632 (6)115
N5—H5B⋯O3iv 0.862.082.909 (7)161
N6—H6A⋯O3v 0.862.132.965 (7)164
N6—H6B⋯N40.862.322.677 (7)105

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-[(E)-3,4-Dimeth-oxy-benzyl-idene]hydrazinecarboxamide.

Authors:  M Nawaz Tahir; M Naveed Umar; Akbar Ali; Hazoor Ahmad Shad
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-16

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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