Literature DB >> 22807844

2,3-Dichloro-5,8-dimeth-oxy-1,4-naphtho-quinone.

Maraizu Ukaegbu1, Ray J Butcher, N M Enwerem, Oladapo Bakare, Charles Hosten.   

Abstract

In the crystal structure of the title compound, C(12)H(8)Cl(2)O(4), mol-ecules crystallize in planes parallel to (-204) with an inter-planar distance of 3.288 (2) Å [centroid-centroid distance = 3.819 (2) and slippage = 1.932 (2) Å]. The structure features C-H⋯O inter-actions involving meth-oxy and aromatic H atoms and the carbonyl O atoms as well as a C-H⋯Cl inter-action involving an aromatic H atom. In addition there are short inter-halogen contacts between adjoining mol-ecules [Cl⋯Cl = 3.3709 (5) Å].

Entities:  

Year:  2012        PMID: 22807844      PMCID: PMC3393287          DOI: 10.1107/S1600536812023926

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological properties of the title compound, see: Huang et al. (1998 ▶); Copeland et al. (2007 ▶); Lien et al. (1997 ▶). For structures of related 2,3-dichloro-1,4-naphtho­quinone derivatives, see: Ikemoto et al. (1977 ▶); Rubio et al. (1985 ▶). For quinoid systems, see: Driebergen et al. (1986 ▶); Scheuermann et al. (2009 ▶).

Experimental

Crystal data

C12H8Cl2O4 M = 287.08 Monoclinic, a = 9.9366 (2) Å b = 15.6564 (3) Å c = 14.8505 (3) Å β = 103.782 (2)° V = 2243.79 (8) Å3 Z = 8 Cu Kα radiation μ = 5.27 mm−1 T = 123 K 0.81 × 0.30 × 0.23 mm

Data collection

Oxford Diffraction Xcalibur Ruby Gemini diffractometer Absorption correction: analytical (CrysAlis PRO; Oxford Diffraction, 2007 ▶) T min = 0.154, T max = 0.418 8037 measured reflections 2199 independent reflections 2156 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.077 S = 1.09 2199 reflections 166 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536812023926/bt5932sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812023926/bt5932Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H8Cl2O4F(000) = 1168
Mr = 287.08Dx = 1.700 Mg m3
Monoclinic, C2/cCu Kα radiation, λ = 1.54184 Å
Hall symbol: -C 2ycCell parameters from 6065 reflections
a = 9.9366 (2) Åθ = 3.1–72.4°
b = 15.6564 (3) ŵ = 5.27 mm1
c = 14.8505 (3) ÅT = 123 K
β = 103.782 (2)°Slab, pink
V = 2243.79 (8) Å30.81 × 0.30 × 0.23 mm
Z = 8
Oxford Diffraction Xcalibur Ruby Gemini diffractometer2199 independent reflections
Radiation source: Enhance (Cu) X-ray Source2156 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
Detector resolution: 10.5081 pixels mm-1θmax = 72.5°, θmin = 5.4°
ω scansh = −12→12
Absorption correction: analytical (CrysAlis PRO; Oxford Diffraction, 2007)k = −19→18
Tmin = 0.154, Tmax = 0.418l = −13→18
8037 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H-atom parameters constrained
wR(F2) = 0.077w = 1/[σ2(Fo2) + (0.0452P)2 + 1.7012P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max = 0.001
2199 reflectionsΔρmax = 0.31 e Å3
166 parametersΔρmin = −0.27 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.00077 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.22986 (3)0.61933 (2)0.50894 (2)0.02353 (13)
Cl20.47240 (4)0.73207 (2)0.62182 (2)0.02670 (14)
O10.29765 (11)0.44185 (6)0.51438 (7)0.0247 (2)
O20.70729 (11)0.63328 (7)0.71429 (7)0.0256 (2)
O30.83562 (11)0.50132 (7)0.79392 (7)0.0266 (3)
O40.41728 (11)0.30361 (6)0.58176 (7)0.0246 (2)
C10.39013 (13)0.48023 (9)0.56736 (9)0.0163 (3)
C20.37962 (13)0.57504 (9)0.57239 (9)0.0163 (3)
C30.48343 (14)0.62303 (8)0.62041 (9)0.0169 (3)
C40.61546 (13)0.58551 (9)0.67577 (9)0.0166 (3)
C50.62262 (13)0.49062 (9)0.68126 (9)0.0160 (3)
C60.73632 (14)0.45098 (9)0.74118 (9)0.0194 (3)
C70.74226 (15)0.36157 (10)0.74499 (10)0.0233 (3)
H7A0.81920.33460.78520.028*
C80.63901 (16)0.31218 (9)0.69163 (10)0.0232 (3)
H8A0.64670.25170.69460.028*
C90.52280 (15)0.34971 (9)0.63305 (10)0.0193 (3)
C100.51411 (14)0.43964 (9)0.62756 (9)0.0162 (3)
C110.94626 (15)0.46147 (11)0.86031 (11)0.0291 (3)
H11A1.00870.50540.89390.044*
H11B0.99780.42350.82820.044*
H11C0.90790.42820.90420.044*
C120.42089 (18)0.21201 (9)0.59175 (12)0.0295 (3)
H12A0.33700.18730.55180.044*
H12B0.42550.19700.65650.044*
H12C0.50270.18940.57370.044*
U11U22U33U12U13U23
Cl10.01650 (19)0.0218 (2)0.0275 (2)0.00482 (11)−0.00425 (14)0.00124 (12)
Cl20.0297 (2)0.01223 (19)0.0314 (2)0.00149 (12)−0.00606 (15)−0.00074 (12)
O10.0218 (5)0.0195 (5)0.0281 (5)−0.0027 (4)−0.0033 (4)−0.0024 (4)
O20.0204 (5)0.0211 (5)0.0300 (6)−0.0041 (4)−0.0045 (4)−0.0011 (4)
O30.0190 (5)0.0279 (6)0.0263 (5)0.0043 (4)−0.0075 (4)0.0011 (4)
O40.0260 (5)0.0131 (5)0.0331 (6)−0.0016 (4)0.0036 (4)−0.0014 (4)
C10.0152 (6)0.0171 (7)0.0167 (6)−0.0015 (5)0.0041 (5)−0.0003 (5)
C20.0131 (6)0.0182 (7)0.0163 (6)0.0032 (5)0.0009 (5)0.0019 (5)
C30.0194 (7)0.0124 (7)0.0182 (7)0.0012 (5)0.0030 (5)0.0004 (5)
C40.0156 (6)0.0192 (7)0.0146 (6)−0.0003 (5)0.0024 (5)0.0004 (5)
C50.0146 (6)0.0173 (7)0.0164 (6)0.0024 (5)0.0041 (5)0.0015 (5)
C60.0165 (6)0.0238 (7)0.0181 (7)0.0029 (5)0.0042 (5)0.0014 (5)
C70.0196 (7)0.0248 (7)0.0256 (7)0.0093 (6)0.0055 (6)0.0090 (6)
C80.0244 (7)0.0172 (7)0.0298 (8)0.0050 (5)0.0104 (6)0.0059 (6)
C90.0201 (7)0.0177 (7)0.0214 (7)0.0006 (5)0.0076 (5)0.0009 (5)
C100.0168 (6)0.0155 (7)0.0172 (6)0.0011 (5)0.0057 (5)0.0010 (5)
C110.0202 (7)0.0375 (9)0.0244 (7)0.0104 (6)−0.0050 (6)0.0029 (6)
C120.0359 (9)0.0140 (7)0.0406 (9)−0.0018 (6)0.0129 (7)−0.0020 (6)
Cl1—C21.7074 (13)C5—C101.4233 (19)
Cl2—C31.7111 (13)C6—C71.402 (2)
O1—C11.2166 (17)C7—C81.375 (2)
O2—C41.2126 (17)C7—H7A0.9500
O3—C61.3564 (18)C8—C91.399 (2)
O3—C111.4331 (17)C8—H8A0.9500
O4—C91.3492 (18)C9—C101.4117 (18)
O4—C121.4413 (17)C11—H11A0.9800
C1—C101.4819 (19)C11—H11B0.9800
C1—C21.4911 (18)C11—H11C0.9800
C2—C31.3367 (19)C12—H12A0.9800
C3—C41.4927 (18)C12—H12B0.9800
C4—C51.4886 (18)C12—H12C0.9800
C5—C61.4052 (19)
C6—O3—C11118.53 (12)C6—C7—H7A119.3
C9—O4—C12118.51 (12)C7—C8—C9120.94 (13)
O1—C1—C10124.72 (13)C7—C8—H8A119.5
O1—C1—C2118.22 (12)C9—C8—H8A119.5
C10—C1—C2117.05 (11)O4—C9—C8122.80 (13)
C3—C2—C1122.14 (12)O4—C9—C10118.19 (12)
C3—C2—Cl1121.77 (11)C8—C9—C10119.00 (13)
C1—C2—Cl1116.03 (10)C9—C10—C5119.95 (12)
C2—C3—C4122.54 (12)C9—C10—C1119.55 (12)
C2—C3—Cl2121.59 (11)C5—C10—C1120.49 (12)
C4—C3—Cl2115.87 (10)O3—C11—H11A109.5
O2—C4—C5124.68 (12)O3—C11—H11B109.5
O2—C4—C3118.74 (12)H11A—C11—H11B109.5
C5—C4—C3116.56 (11)O3—C11—H11C109.5
C6—C5—C10119.64 (13)H11A—C11—H11C109.5
C6—C5—C4119.75 (12)H11B—C11—H11C109.5
C10—C5—C4120.60 (12)O4—C12—H12A109.5
O3—C6—C7122.63 (13)O4—C12—H12B109.5
O3—C6—C5118.27 (13)H12A—C12—H12B109.5
C7—C6—C5119.10 (13)O4—C12—H12C109.5
C8—C7—C6121.33 (13)H12A—C12—H12C109.5
C8—C7—H7A119.3H12B—C12—H12C109.5
O1—C1—C2—C3−172.16 (13)C4—C5—C6—C7−179.42 (12)
C10—C1—C2—C37.53 (19)O3—C6—C7—C8179.06 (13)
O1—C1—C2—Cl15.05 (16)C5—C6—C7—C8−0.2 (2)
C10—C1—C2—Cl1−175.27 (9)C6—C7—C8—C9−1.4 (2)
C1—C2—C3—C4−2.5 (2)C12—O4—C9—C83.6 (2)
Cl1—C2—C3—C4−179.59 (10)C12—O4—C9—C10−175.82 (12)
C1—C2—C3—Cl2177.39 (10)C7—C8—C9—O4−177.91 (13)
Cl1—C2—C3—Cl20.34 (17)C7—C8—C9—C101.5 (2)
C2—C3—C4—O2176.86 (13)O4—C9—C10—C5179.39 (12)
Cl2—C3—C4—O2−3.09 (17)C8—C9—C10—C5−0.06 (19)
C2—C3—C4—C5−4.63 (19)O4—C9—C10—C10.79 (18)
Cl2—C3—C4—C5175.42 (9)C8—C9—C10—C1−178.66 (12)
O2—C4—C5—C66.3 (2)C6—C5—C10—C9−1.52 (19)
C3—C4—C5—C6−172.15 (12)C4—C5—C10—C9179.58 (11)
O2—C4—C5—C10−174.84 (13)C6—C5—C10—C1177.06 (11)
C3—C4—C5—C106.75 (18)C4—C5—C10—C1−1.83 (18)
C11—O3—C6—C7−4.1 (2)O1—C1—C10—C9−6.9 (2)
C11—O3—C6—C5175.23 (12)C2—C1—C10—C9173.40 (11)
C10—C5—C6—O3−177.66 (12)O1—C1—C10—C5174.48 (12)
C4—C5—C6—O31.24 (18)C2—C1—C10—C5−5.19 (18)
C10—C5—C6—C71.67 (19)
D—H···AD—HH···AD···AD—H···A
C7—H7A···Cl2i0.952.723.6593 (14)169
C8—H8A···O2i0.952.543.3337 (18)142
C11—H11C···O1ii0.982.623.4030 (19)137
C12—H12A···O1iii0.982.493.3723 (19)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C7—H7A⋯Cl2i 0.952.723.6593 (14)169
C8—H8A⋯O2i 0.952.543.3337 (18)142
C11—H11C⋯O1ii 0.982.623.4030 (19)137
C12—H12A⋯O1iii 0.982.493.3723 (19)149

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antiplatelet, antiinflammatory, and antiallergic activities of substituted 3-chloro-5,8-dimethoxy-1,4-naphthoquinone and related compounds.

Authors:  L J Huang; F C Chang; K H Lee; J P Wang; C M Teng; S C Kuo
Journal:  Bioorg Med Chem       Date:  1998-12       Impact factor: 3.641

3.  Synthesis and antiplatelet, antiinflammatory, and antiallergic activities of 2-substituted 3-chloro-1,4-naphthoquinone derivatives.

Authors:  J C Lien; L J Huang; J P Wang; C M Teng; K H Lee; S C Kuo
Journal:  Bioorg Med Chem       Date:  1997-12       Impact factor: 3.641

4.  Cytotoxicity of 2,3-dichloro-5,8-dimethoxy-1,4-naphthoquinone in androgen-dependent and -independent prostate cancer cell lines.

Authors:  Robert L Copeland; Jharna R Das; Oladapo Bakare; Nkechi M Enwerem; Solomon Berhe; Kenguele Hillaire; Douglas White; Desta Beyene; Olakunle O Kassim; Yasmine M Kanaan
Journal:  Anticancer Res       Date:  2007 May-Jun       Impact factor: 2.480

5.  Single-electron transfer in palladium complexes of 1,4-naphthoquinone-containing bis(pyrazol-1-yl)methane ligands.

Authors:  Sebastian Scheuermann; Biprajit Sarkar; Michael Bolte; Jan W Bats; Hans-Wolfram Lerner; Matthias Wagner
Journal:  Inorg Chem       Date:  2009-10-05       Impact factor: 5.165

  5 in total

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