Literature DB >> 22807820

rac-Methyl 3-(2-meth-oxy-phen-yl)-1-phenyl-3,3a,4,9b-tetra-hydro-1H-chromeno[4,3-c]isoxazole-3a-carboxyl-ate.

S Paramasivam, J Srinivasan, P R Seshadri, M Bakthadoss.   

Abstract

The title compound, C(25)H(23)NO(5), comprising two stereogenic carbon atoms of the same configuration, crystallizes in a centrosymmetric space group as a racemate. The six-membered pyran ring and the five-membered isoxazole ring adopt sofa and twisted conformations, respectively. The dihedral angle between the benzene ring and the mean plane through the near coplanar atoms of the pyran ring is 10.73 (7)°. The crystal structure features C-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22807820      PMCID: PMC3393263          DOI: 10.1107/S1600536812021356

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of the title compound, see: Eddington et al. (2002 ▶); Mullen et al. (1988 ▶); Kashiwada et al. (2001 ▶); Caine (1993 ▶). For N-atom hybridization, see: Beddoes et al. (1986 ▶). For related structures, see: Kanchanadevi et al. (2011 ▶); Swaminathan et al. (2012 ▶). For conformational analysis and puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C25H23NO5 M = 417.44 Monoclinic, a = 18.3791 (7) Å b = 15.2466 (6) Å c = 7.7235 (3) Å β = 90.514 (2)° V = 2164.18 (15) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.20 × 0.15 × 0.10 mm

Data collection

Bruker SMART APEXII area-detector diffractometer 20989 measured reflections 5478 independent reflections 3614 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.159 S = 0.96 5478 reflections 280 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008 ▶), PLATON and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812021356/kp2411sup1.cif Structure factors: contains datablock(s) guru2. DOI: 10.1107/S1600536812021356/kp2411Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812021356/kp2411Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H23NO5F(000) = 880
Mr = 417.44Dx = 1.281 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5478 reflections
a = 18.3791 (7) Åθ = 1.7–28.6°
b = 15.2466 (6) ŵ = 0.09 mm1
c = 7.7235 (3) ÅT = 298 K
β = 90.514 (2)°Block, colourless
V = 2164.18 (15) Å30.20 × 0.15 × 0.10 mm
Z = 4
Bruker SMART APEXII area-detector diffractometer3614 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.036
Graphite monochromatorθmax = 28.6°, θmin = 1.7°
ω and φ scansh = −23→24
20989 measured reflectionsk = −20→17
5478 independent reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.159H-atom parameters constrained
S = 0.96w = 1/[σ2(Fo2) + (0.0739P)2 + 0.7112P] where P = (Fo2 + 2Fc2)/3
5478 reflections(Δ/σ)max = 0.031
280 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O20.70764 (6)0.09270 (7)0.44631 (14)0.0483 (3)
O30.86302 (8)−0.14409 (10)0.4169 (2)0.0700 (4)
O10.73699 (8)−0.14734 (9)0.68811 (17)0.0632 (4)
O40.79918 (8)−0.10360 (10)0.18406 (17)0.0667 (4)
N10.65661 (8)0.03750 (9)0.35751 (17)0.0434 (3)
O50.91863 (8)0.05907 (11)0.3191 (2)0.0835 (5)
C80.76235 (9)−0.04489 (11)0.4528 (2)0.0456 (4)
C200.64690 (9)0.06345 (11)0.1815 (2)0.0439 (4)
C70.68195 (9)−0.05364 (10)0.3918 (2)0.0426 (4)
H70.6806−0.08660.28290.051*
C250.66789 (12)0.14637 (12)0.1260 (2)0.0574 (5)
H250.69400.18310.19980.069*
C60.63369 (10)−0.09929 (10)0.5208 (2)0.0456 (4)
C120.77738 (9)0.05377 (11)0.4147 (2)0.0463 (4)
H120.78990.06100.29240.056*
C50.55870 (10)−0.09931 (11)0.4991 (2)0.0512 (4)
H50.5380−0.06700.40920.061*
C10.66301 (11)−0.14728 (11)0.6568 (2)0.0532 (4)
C130.83338 (11)0.09872 (11)0.5257 (2)0.0549 (4)
C100.81416 (10)−0.10354 (11)0.3522 (2)0.0503 (4)
C90.76871 (11)−0.06416 (13)0.6460 (2)0.0565 (5)
H9A0.8196−0.06420.68010.068*
H9B0.7444−0.01830.71040.068*
C140.90540 (11)0.10027 (12)0.4729 (3)0.0640 (5)
C210.60827 (10)0.00969 (12)0.0687 (2)0.0529 (4)
H210.5934−0.04570.10440.064*
C40.51420 (12)−0.14634 (13)0.6085 (3)0.0635 (5)
H40.4640−0.14520.59290.076*
C240.64973 (14)0.17402 (15)−0.0393 (3)0.0731 (6)
H240.66330.2299−0.07490.088*
C220.59180 (12)0.03867 (15)−0.0977 (2)0.0650 (5)
H220.56660.0020−0.17350.078*
C180.81593 (14)0.13951 (14)0.6799 (3)0.0714 (6)
H180.76780.13980.71620.086*
C230.61227 (14)0.12089 (16)−0.1515 (3)0.0734 (6)
H230.60080.1401−0.26270.088*
C20.61876 (13)−0.19588 (13)0.7667 (3)0.0679 (6)
H20.6391−0.22850.85650.082*
C30.54475 (14)−0.19499 (15)0.7408 (3)0.0732 (6)
H30.5149−0.22750.81330.088*
C150.95828 (13)0.14082 (15)0.5751 (4)0.0845 (8)
H151.00660.14130.54000.101*
C170.86869 (17)0.17994 (18)0.7813 (4)0.0917 (8)
H170.85620.20670.88510.110*
C110.84555 (15)−0.15710 (19)0.0768 (3)0.0894 (8)
H11A0.8301−0.1523−0.04190.134*
H11B0.8423−0.21720.11310.134*
H11C0.8950−0.13740.08810.134*
C160.93901 (18)0.18001 (17)0.7273 (4)0.0971 (9)
H160.97450.20710.79510.116*
C190.98762 (16)0.0700 (2)0.2409 (5)0.1113 (11)
H19A0.98880.03790.13400.167*
H19B1.02490.04830.31750.167*
H19C0.99580.13110.21830.167*
U11U22U33U12U13U23
O20.0549 (7)0.0414 (6)0.0488 (6)0.0020 (5)−0.0010 (5)−0.0077 (5)
O30.0567 (8)0.0680 (9)0.0852 (10)0.0145 (7)−0.0006 (7)0.0109 (7)
O10.0704 (9)0.0569 (8)0.0621 (8)0.0013 (6)−0.0071 (6)0.0185 (6)
O40.0702 (9)0.0720 (9)0.0579 (8)0.0221 (7)0.0024 (6)−0.0124 (6)
N10.0489 (8)0.0390 (7)0.0423 (7)0.0010 (6)−0.0015 (6)0.0005 (5)
O50.0618 (10)0.0805 (11)0.1085 (13)−0.0042 (8)0.0218 (9)−0.0086 (9)
C80.0499 (9)0.0412 (8)0.0457 (8)0.0014 (7)−0.0021 (7)0.0010 (7)
C200.0470 (9)0.0433 (8)0.0416 (8)0.0052 (7)0.0068 (7)0.0026 (6)
C70.0498 (9)0.0373 (8)0.0406 (7)0.0020 (6)0.0002 (6)−0.0001 (6)
C250.0795 (13)0.0439 (9)0.0490 (9)0.0004 (9)0.0094 (9)0.0005 (7)
C60.0564 (10)0.0357 (8)0.0448 (8)−0.0012 (7)0.0018 (7)−0.0013 (6)
C120.0505 (10)0.0412 (8)0.0472 (8)−0.0001 (7)0.0017 (7)−0.0032 (7)
C50.0580 (11)0.0434 (9)0.0522 (9)−0.0029 (8)0.0040 (8)−0.0024 (7)
C10.0644 (12)0.0420 (9)0.0532 (9)−0.0008 (8)0.0001 (8)0.0041 (7)
C130.0583 (11)0.0423 (9)0.0641 (11)−0.0051 (8)−0.0055 (9)−0.0011 (8)
C100.0480 (10)0.0397 (8)0.0634 (10)0.0003 (7)0.0004 (8)0.0033 (7)
C90.0599 (11)0.0585 (11)0.0510 (9)−0.0046 (9)−0.0081 (8)0.0068 (8)
C140.0602 (12)0.0460 (10)0.0859 (14)−0.0023 (9)−0.0037 (10)0.0049 (10)
C210.0557 (11)0.0529 (10)0.0502 (9)−0.0014 (8)−0.0035 (8)0.0028 (8)
C40.0636 (12)0.0572 (11)0.0698 (12)−0.0112 (9)0.0121 (10)−0.0003 (9)
C240.1051 (18)0.0593 (12)0.0550 (11)0.0036 (12)0.0132 (11)0.0155 (9)
C220.0696 (13)0.0760 (13)0.0493 (10)0.0074 (11)−0.0063 (9)−0.0037 (9)
C180.0812 (15)0.0627 (12)0.0703 (13)−0.0092 (11)−0.0067 (11)−0.0155 (10)
C230.0920 (16)0.0829 (15)0.0454 (10)0.0132 (13)0.0023 (10)0.0154 (10)
C20.0915 (16)0.0515 (11)0.0610 (11)−0.0048 (10)0.0037 (11)0.0170 (9)
C30.0824 (16)0.0615 (12)0.0761 (14)−0.0158 (11)0.0176 (12)0.0134 (11)
C150.0590 (13)0.0600 (13)0.134 (2)−0.0097 (10)−0.0191 (14)0.0133 (14)
C170.106 (2)0.0773 (16)0.0917 (17)−0.0128 (15)−0.0253 (15)−0.0245 (13)
C110.0917 (18)0.0971 (18)0.0797 (15)0.0306 (15)0.0149 (13)−0.0223 (14)
C160.098 (2)0.0653 (15)0.127 (2)−0.0177 (14)−0.0437 (18)−0.0097 (16)
C190.0838 (19)0.0871 (19)0.164 (3)−0.0004 (15)0.0523 (19)0.0032 (19)
O2—N11.4306 (17)C13—C141.389 (3)
O2—C121.436 (2)C9—H9A0.9700
O3—C101.196 (2)C9—H9B0.9700
O1—C11.379 (2)C14—C151.391 (3)
O1—C91.435 (2)C21—C221.390 (2)
O4—C101.325 (2)C21—H210.9300
O4—C111.446 (3)C4—C31.378 (3)
N1—C201.426 (2)C4—H40.9300
N1—C71.489 (2)C24—C231.368 (3)
O5—C141.368 (3)C24—H240.9300
O5—C191.419 (3)C22—C231.374 (3)
C8—C101.524 (2)C22—H220.9300
C8—C91.524 (2)C18—C171.386 (3)
C8—C71.553 (2)C18—H180.9300
C8—C121.558 (2)C23—H230.9300
C20—C211.387 (2)C2—C31.373 (3)
C20—C251.391 (2)C2—H20.9300
C7—C61.510 (2)C3—H30.9300
C7—H70.9800C15—C161.369 (4)
C25—C241.382 (3)C15—H150.9300
C25—H250.9300C17—C161.361 (4)
C6—C11.385 (2)C17—H170.9300
C6—C51.387 (3)C11—H11A0.9600
C12—C131.500 (2)C11—H11B0.9600
C12—H120.9800C11—H11C0.9600
C5—C41.382 (3)C16—H160.9300
C5—H50.9300C19—H19A0.9600
C1—C21.394 (3)C19—H19B0.9600
C13—C181.384 (3)C19—H19C0.9600
N1—O2—C12104.93 (11)C8—C9—H9B109.3
C1—O1—C9111.21 (13)H9A—C9—H9B108.0
C10—O4—C11116.32 (16)O5—C14—C15124.6 (2)
C20—N1—O2111.71 (12)O5—C14—C13115.12 (18)
C20—N1—C7117.71 (12)C15—C14—C13120.3 (2)
O2—N1—C7105.14 (11)C20—C21—C22119.92 (18)
C14—O5—C19118.8 (2)C20—C21—H21120.0
C10—C8—C9110.07 (14)C22—C21—H21120.0
C10—C8—C7113.09 (13)C3—C4—C5119.5 (2)
C9—C8—C7110.18 (14)C3—C4—H4120.2
C10—C8—C12110.94 (14)C5—C4—H4120.2
C9—C8—C12111.05 (14)C23—C24—C25121.4 (2)
C7—C8—C12101.27 (12)C23—C24—H24119.3
C21—C20—C25119.05 (15)C25—C24—H24119.3
C21—C20—N1119.60 (15)C23—C22—C21120.78 (19)
C25—C20—N1120.90 (15)C23—C22—H22119.6
N1—C7—C6111.29 (13)C21—C22—H22119.6
N1—C7—C8105.62 (12)C13—C18—C17121.3 (2)
C6—C7—C8113.73 (13)C13—C18—H18119.3
N1—C7—H7108.7C17—C18—H18119.3
C6—C7—H7108.7C24—C23—C22119.11 (18)
C8—C7—H7108.7C24—C23—H23120.4
C24—C25—C20119.77 (18)C22—C23—H23120.4
C24—C25—H25120.1C3—C2—C1119.25 (19)
C20—C25—H25120.1C3—C2—H2120.4
C1—C6—C5118.08 (16)C1—C2—H2120.4
C1—C6—C7121.14 (16)C2—C3—C4120.65 (19)
C5—C6—C7120.63 (15)C2—C3—H3119.7
O2—C12—C13108.84 (14)C4—C3—H3119.7
O2—C12—C8101.94 (13)C16—C15—C14119.8 (3)
C13—C12—C8117.07 (14)C16—C15—H15120.1
O2—C12—H12109.5C14—C15—H15120.1
C13—C12—H12109.5C16—C17—C18119.3 (3)
C8—C12—H12109.5C16—C17—H17120.4
C4—C5—C6121.29 (18)C18—C17—H17120.4
C4—C5—H5119.4O4—C11—H11A109.5
C6—C5—H5119.4O4—C11—H11B109.5
O1—C1—C6120.62 (16)H11A—C11—H11B109.5
O1—C1—C2118.22 (16)O4—C11—H11C109.5
C6—C1—C2121.16 (18)H11A—C11—H11C109.5
C18—C13—C14118.28 (19)H11B—C11—H11C109.5
C18—C13—C12122.30 (19)C17—C16—C15121.1 (2)
C14—C13—C12119.42 (18)C17—C16—H16119.5
O3—C10—O4123.87 (18)C15—C16—H16119.5
O3—C10—C8124.12 (17)O5—C19—H19A109.5
O4—C10—C8112.00 (14)O5—C19—H19B109.5
O1—C9—C8111.39 (14)H19A—C19—H19B109.5
O1—C9—H9A109.3O5—C19—H19C109.5
C8—C9—H9A109.3H19A—C19—H19C109.5
O1—C9—H9B109.3H19B—C19—H19C109.5
C12—O2—N1—C20−87.53 (14)C8—C12—C13—C18−88.9 (2)
C12—O2—N1—C741.24 (15)O2—C12—C13—C14−153.74 (16)
O2—N1—C20—C21170.08 (14)C8—C12—C13—C1491.4 (2)
C7—N1—C20—C2148.3 (2)C11—O4—C10—O30.4 (3)
O2—N1—C20—C25−17.7 (2)C11—O4—C10—C8179.75 (18)
C7—N1—C20—C25−139.49 (17)C9—C8—C10—O3−14.9 (2)
C20—N1—C7—C6−129.01 (15)C7—C8—C10—O3−138.62 (17)
O2—N1—C7—C6105.90 (14)C12—C8—C10—O3108.40 (19)
C20—N1—C7—C8107.13 (15)C9—C8—C10—O4165.77 (15)
O2—N1—C7—C8−17.97 (15)C7—C8—C10—O442.1 (2)
C10—C8—C7—N1−128.15 (14)C12—C8—C10—O4−70.92 (18)
C9—C8—C7—N1108.20 (15)C1—O1—C9—C8−64.7 (2)
C12—C8—C7—N1−9.40 (15)C10—C8—C9—O1−71.94 (19)
C10—C8—C7—C6109.53 (16)C7—C8—C9—O153.44 (19)
C9—C8—C7—C6−14.11 (19)C12—C8—C9—O1164.82 (15)
C12—C8—C7—C6−131.72 (14)C19—O5—C14—C15−11.3 (3)
C21—C20—C25—C240.3 (3)C19—O5—C14—C13169.5 (2)
N1—C20—C25—C24−171.90 (18)C18—C13—C14—O5−179.71 (18)
N1—C7—C6—C1−134.52 (15)C12—C13—C14—O50.0 (3)
C8—C7—C6—C1−15.4 (2)C18—C13—C14—C151.0 (3)
N1—C7—C6—C550.02 (19)C12—C13—C14—C15−179.30 (18)
C8—C7—C6—C5169.15 (14)C25—C20—C21—C220.7 (3)
N1—O2—C12—C13−171.11 (12)N1—C20—C21—C22173.05 (17)
N1—O2—C12—C8−46.80 (14)C6—C5—C4—C3−0.7 (3)
C10—C8—C12—O2153.58 (13)C20—C25—C24—C23−1.0 (3)
C9—C8—C12—O2−83.68 (16)C20—C21—C22—C23−1.1 (3)
C7—C8—C12—O233.30 (14)C14—C13—C18—C17−0.9 (3)
C10—C8—C12—C13−87.82 (18)C12—C13—C18—C17179.4 (2)
C9—C8—C12—C1334.9 (2)C25—C24—C23—C220.6 (4)
C7—C8—C12—C13151.90 (15)C21—C22—C23—C240.5 (3)
C1—C6—C5—C4−0.6 (3)O1—C1—C2—C3178.34 (19)
C7—C6—C5—C4174.99 (16)C6—C1—C2—C3−1.0 (3)
C9—O1—C1—C633.7 (2)C1—C2—C3—C4−0.4 (3)
C9—O1—C1—C2−145.58 (18)C5—C4—C3—C21.2 (3)
C5—C6—C1—O1−177.86 (15)O5—C14—C15—C16−179.8 (2)
C7—C6—C1—O16.6 (2)C13—C14—C15—C16−0.6 (3)
C5—C6—C1—C21.4 (3)C13—C18—C17—C160.5 (4)
C7—C6—C1—C2−174.15 (16)C18—C17—C16—C15−0.1 (4)
O2—C12—C13—C1826.0 (2)C14—C15—C16—C170.1 (4)
D—H···AD—HH···AD···AD—H···A
C7—H7···O40.982.332.803 (2)109
C15—H15···O3i0.932.423.285 (3)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C7—H7⋯O40.982.332.803 (2)109
C15—H15⋯O3i 0.932.423.285 (3)155

Symmetry code: (i) .

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Journal:  Science       Date:  1993-06-18       Impact factor: 47.728

4.  Studies on antifungal agents. 23. Novel substituted 3,5-diphenyl-3-(1H-imidazol-1-ylmethyl)- 2-alkylisoxazolidine derivatives.

Authors:  G B Mullen; T R DeCory; J T Mitchell; S D Allen; C R Kinsolving; V S Georgiev
Journal:  J Med Chem       Date:  1988-10       Impact factor: 7.446

5.  (2S,5S,6R)-5-(4-Methyl-phen-yl)-3-phenyl-4,8-dioxa-3-aza-tricyclo-[7.4.0.0]trideca-1(13),9,11-triene-6-carbonitrile.

Authors:  K Swaminathan; K Sethusankar; J Srinivasan; M Bakthadoss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-07

6.  Methyl 3-(4-isopropyl-phen-yl)-1-phenyl-3,3a,4,9b-tetra-hydro-1H-chromeno[4,3-c]isoxazole-3a-carboxyl-ate.

Authors:  J Kanchanadevi; G Anbalagan; J Srinivasan; M Bakthadoss; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  1 in total

1.  rac-Methyl 3-(2-meth-oxy-phen-yl)-3a,4-di-hydro-3H-chromeno[4,3-c]isoxazole-3a-carboxyl-ate.

Authors:  S Paramasivam; J Srinivasan; P R Seshadri; M Bakthadoss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-05
  1 in total

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