Literature DB >> 22346925

(2S,5S,6R)-5-(4-Methyl-phen-yl)-3-phenyl-4,8-dioxa-3-aza-tricyclo-[7.4.0.0]trideca-1(13),9,11-triene-6-carbonitrile.

K Swaminathan, K Sethusankar, J Srinivasan, M Bakthadoss.   

Abstract

In the title compound, C(24)H(20)N(2)O(2), the six-membered pyran ring adopts a half-chair conformation with one C atom deviating from the mean plane of the remaining ring atoms by 0.654 (6) Å. The five-membered isoxazole ring adopts an N-envelope conformation with the N atom displaced by 0.742 (5) Å from the mean plane formed by the remaining ring atoms. The carbonitrile side chain is almost linear, with a C-C-N angle of 178.6 (5)°. The crystal packing is stabilized by inter-molecular C-H⋯N inter-actions, through bifurcated acceptor hydrogen bonds formed between the carbonitrile N atom and two alternate C atoms in the unsubstituted benzene ring. The mol-ecular structure and crystal packing are further stabilized by intra-molecular and inter-molecular C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 22346925      PMCID: PMC3274980          DOI: 10.1107/S1600536811055413

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For uses of benzopyran and isoxazolidine derivatives, see: Green et al. (1982 ▶); Kashiwada et al. (2001 ▶); Mullen et al. (1988 ▶). For a related structure, see: Swaminathan et al. (2011 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For synthetic details, see: Bakthadoss & Murugan (2010 ▶).

Experimental

Crystal data

C24H20N2O2 M = 368.42 Orthorhombic, a = 8.9890 (16) Å b = 9.8432 (19) Å c = 22.084 (4) Å V = 1954.0 (6) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.30 × 0.25 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.976, T max = 0.980 10510 measured reflections 4476 independent reflections 2396 reflections with I > 2σ(I) R int = 0.065

Refinement

R[F 2 > 2σ(F 2)] = 0.081 wR(F 2) = 0.252 S = 1.00 4476 reflections 254 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811055413/pv2496sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055413/pv2496Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811055413/pv2496Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H20N2O2F(000) = 776
Mr = 368.42Dx = 1.252 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 4476 reflections
a = 8.9890 (16) Åθ = 1.8–27.7°
b = 9.8432 (19) ŵ = 0.08 mm1
c = 22.084 (4) ÅT = 293 K
V = 1954.0 (6) Å3Block, colourless
Z = 40.30 × 0.25 × 0.25 mm
Bruker Kappa APEXII CCD diffractometer4476 independent reflections
Radiation source: fine-focus sealed tube2396 reflections with I > 2σ(I)
graphiteRint = 0.065
ω scansθmax = 27.7°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −7→11
Tmin = 0.976, Tmax = 0.980k = −9→12
10510 measured reflectionsl = −28→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.081Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.252H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.1392P)2 + 0.1028P] where P = (Fo2 + 2Fc2)/3
4476 reflections(Δ/σ)max < 0.001
254 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7119 (5)0.2084 (4)0.21685 (18)0.0428 (9)
C20.7325 (5)0.0754 (4)0.2349 (2)0.0576 (12)
H20.69140.00500.21230.069*
C30.8128 (6)0.0469 (5)0.2855 (2)0.0655 (14)
H30.8273−0.04250.29770.079*
C40.8728 (6)0.1533 (5)0.3188 (2)0.0605 (12)
H40.92730.13520.35370.073*
C50.8522 (5)0.2841 (5)0.30056 (17)0.0522 (11)
H50.89370.35410.32320.063*
C60.7705 (4)0.3161 (4)0.24889 (16)0.0414 (9)
C70.7539 (4)0.4578 (4)0.22771 (15)0.0383 (9)
H70.85160.50170.22590.046*
C80.6754 (4)0.4707 (4)0.16629 (15)0.0402 (9)
C90.5624 (5)0.3556 (4)0.1614 (2)0.0533 (11)
H9A0.49020.36410.19380.064*
H9B0.50970.36320.12320.064*
C100.7823 (6)0.4613 (5)0.11672 (17)0.0520 (11)
C110.5993 (5)0.6120 (4)0.17064 (17)0.0459 (10)
H110.49130.59880.17030.055*
C120.6383 (5)0.7144 (4)0.12342 (16)0.0448 (9)
C130.7633 (6)0.7942 (5)0.12838 (19)0.0609 (13)
H130.82580.78390.16160.073*
C140.7971 (7)0.8890 (5)0.0848 (2)0.0728 (15)
H140.88060.94360.08970.087*
C150.7101 (7)0.9044 (5)0.0344 (2)0.0684 (15)
C160.5876 (7)0.8215 (7)0.0288 (2)0.0774 (17)
H160.52660.8291−0.00510.093*
C170.5550 (6)0.7284 (6)0.0726 (2)0.0710 (15)
H170.47270.67240.06740.085*
C180.7427 (10)1.0141 (8)−0.0113 (3)0.112 (3)
H18A0.72310.9804−0.05130.168*
H18B0.84531.0404−0.00830.168*
H18C0.68051.0914−0.00350.168*
C190.7143 (5)0.5804 (4)0.32222 (16)0.0457 (10)
C200.6470 (6)0.5344 (6)0.37311 (17)0.0678 (14)
H200.56080.48250.37030.081*
C210.7058 (8)0.5643 (8)0.4288 (2)0.088 (2)
H210.65900.53290.46370.105*
C220.8317 (9)0.6392 (7)0.4334 (2)0.091 (2)
H220.87120.65920.47130.110*
C230.9005 (8)0.6853 (6)0.3823 (2)0.0874 (19)
H230.98740.73610.38530.105*
C240.8416 (6)0.6567 (5)0.3261 (2)0.0658 (14)
H240.88770.68880.29120.079*
N10.6521 (4)0.5396 (3)0.26516 (13)0.0454 (8)
N20.8669 (6)0.4523 (5)0.07901 (16)0.0717 (13)
O10.6300 (4)0.2284 (3)0.16486 (13)0.0585 (8)
O20.6411 (4)0.6622 (3)0.22807 (11)0.0539 (8)
U11U22U33U12U13U23
C10.037 (2)0.033 (2)0.059 (2)0.0030 (18)0.0031 (18)0.0012 (18)
C20.045 (3)0.030 (2)0.098 (3)0.002 (2)0.007 (3)0.000 (2)
C30.051 (3)0.041 (3)0.105 (4)0.006 (2)0.014 (3)0.023 (3)
C40.053 (3)0.054 (3)0.074 (3)0.019 (3)0.000 (2)0.015 (2)
C50.053 (3)0.046 (2)0.057 (2)0.007 (2)−0.003 (2)0.003 (2)
C60.034 (2)0.039 (2)0.0515 (19)0.0039 (18)0.0058 (16)0.0040 (17)
C70.036 (2)0.035 (2)0.0440 (18)0.0044 (17)0.0030 (16)−0.0010 (17)
C80.034 (2)0.039 (2)0.0475 (19)0.0019 (18)0.0014 (16)0.0024 (17)
C90.048 (3)0.045 (3)0.067 (3)−0.005 (2)−0.008 (2)−0.002 (2)
C100.066 (3)0.048 (2)0.0419 (19)0.007 (2)0.002 (2)0.0000 (19)
C110.038 (2)0.049 (2)0.051 (2)0.0084 (19)−0.0003 (17)0.0013 (19)
C120.041 (3)0.044 (2)0.0493 (19)0.006 (2)0.0000 (18)0.0058 (18)
C130.060 (3)0.057 (3)0.065 (3)0.002 (3)−0.011 (2)0.015 (2)
C140.067 (4)0.057 (3)0.095 (4)−0.006 (3)0.003 (3)0.019 (3)
C150.082 (4)0.059 (3)0.064 (3)0.023 (3)0.010 (3)0.020 (3)
C160.077 (4)0.096 (5)0.059 (3)0.011 (4)−0.011 (3)0.024 (3)
C170.066 (4)0.077 (4)0.070 (3)−0.008 (3)−0.022 (2)0.012 (3)
C180.126 (7)0.102 (5)0.108 (4)0.023 (5)0.016 (4)0.055 (4)
C190.053 (3)0.039 (2)0.046 (2)0.009 (2)0.0059 (18)0.0024 (18)
C200.062 (3)0.091 (4)0.050 (2)0.001 (3)0.009 (2)0.007 (3)
C210.100 (5)0.116 (6)0.048 (3)0.003 (5)0.009 (3)0.000 (3)
C220.135 (7)0.083 (4)0.056 (3)−0.002 (5)−0.016 (3)−0.018 (3)
C230.117 (5)0.068 (4)0.077 (3)−0.033 (4)−0.016 (3)−0.011 (3)
C240.085 (4)0.052 (3)0.061 (2)−0.018 (3)−0.001 (3)−0.004 (2)
N10.046 (2)0.0425 (19)0.0473 (16)0.0103 (18)0.0050 (15)0.0043 (15)
N20.076 (3)0.083 (3)0.056 (2)0.017 (3)0.009 (2)0.003 (2)
O10.065 (2)0.0405 (17)0.0696 (18)−0.0055 (16)−0.0100 (16)−0.0047 (14)
O20.067 (2)0.0478 (17)0.0469 (13)0.0153 (17)0.0043 (14)0.0060 (13)
C1—C61.379 (5)C12—C131.376 (6)
C1—O11.378 (5)C13—C141.373 (6)
C1—C21.381 (5)C13—H130.9300
C2—C31.360 (7)C14—C151.369 (7)
C2—H20.9300C14—H140.9300
C3—C41.388 (7)C15—C161.376 (8)
C3—H30.9300C15—C181.507 (7)
C4—C51.362 (6)C16—C171.364 (7)
C4—H40.9300C16—H160.9300
C5—C61.393 (5)C17—H170.9300
C5—H50.9300C18—H18A0.9600
C6—C71.478 (5)C18—H18B0.9600
C7—N11.473 (5)C18—H18C0.9600
C7—C81.534 (5)C19—C201.354 (6)
C7—H70.9800C19—C241.371 (7)
C8—C101.459 (6)C19—N11.436 (5)
C8—C91.526 (6)C20—C211.371 (7)
C8—C111.553 (6)C20—H200.9300
C9—O11.394 (5)C21—C221.355 (10)
C9—H9A0.9700C21—H210.9300
C9—H9B0.9700C22—C231.365 (8)
C10—N21.131 (6)C22—H220.9300
C11—O21.412 (5)C23—C241.377 (7)
C11—C121.492 (5)C23—H230.9300
C11—H110.9800C24—H240.9300
C12—C171.357 (6)N1—O21.461 (4)
C6—C1—O1121.4 (3)C13—C12—C11121.5 (4)
C6—C1—C2122.0 (4)C12—C13—C14120.8 (4)
O1—C1—C2116.6 (4)C12—C13—H13119.6
C3—C2—C1120.3 (4)C14—C13—H13119.6
C3—C2—H2119.9C15—C14—C13121.2 (5)
C1—C2—H2119.9C15—C14—H14119.4
C2—C3—C4119.1 (4)C13—C14—H14119.4
C2—C3—H3120.5C14—C15—C16117.7 (5)
C4—C3—H3120.5C14—C15—C18120.9 (6)
C5—C4—C3120.2 (4)C16—C15—C18121.3 (6)
C5—C4—H4119.9C17—C16—C15120.4 (5)
C3—C4—H4119.9C17—C16—H16119.8
C4—C5—C6121.9 (4)C15—C16—H16119.8
C4—C5—H5119.1C12—C17—C16122.5 (5)
C6—C5—H5119.1C12—C17—H17118.8
C1—C6—C5116.6 (4)C16—C17—H17118.8
C1—C6—C7121.6 (3)C15—C18—H18A109.5
C5—C6—C7121.7 (4)C15—C18—H18B109.5
N1—C7—C6113.6 (3)H18A—C18—H18B109.5
N1—C7—C899.5 (3)C15—C18—H18C109.5
C6—C7—C8113.8 (3)H18A—C18—H18C109.5
N1—C7—H7109.8H18B—C18—H18C109.5
C6—C7—H7109.8C20—C19—C24120.2 (4)
C8—C7—H7109.8C20—C19—N1117.5 (4)
C10—C8—C9109.8 (4)C24—C19—N1122.2 (4)
C10—C8—C7110.8 (3)C19—C20—C21120.1 (6)
C9—C8—C7107.9 (3)C19—C20—H20120.0
C10—C8—C11113.1 (3)C21—C20—H20120.0
C9—C8—C11112.1 (3)C22—C21—C20120.4 (5)
C7—C8—C11102.8 (3)C22—C21—H21119.8
O1—C9—C8111.9 (4)C20—C21—H21119.8
O1—C9—H9A109.2C23—C22—C21119.8 (5)
C8—C9—H9A109.2C23—C22—H22120.1
O1—C9—H9B109.2C21—C22—H22120.1
C8—C9—H9B109.2C22—C23—C24120.2 (6)
H9A—C9—H9B107.9C22—C23—H23119.9
N2—C10—C8178.6 (5)C24—C23—H23119.9
O2—C11—C12109.2 (3)C19—C24—C23119.3 (5)
O2—C11—C8104.6 (3)C19—C24—H24120.3
C12—C11—C8117.3 (3)C23—C24—H24120.3
O2—C11—H11108.5C19—N1—O2106.7 (3)
C12—C11—H11108.5C19—N1—C7113.8 (3)
C8—C11—H11108.5O2—N1—C7100.3 (3)
C17—C12—C13117.3 (4)C1—O1—C9114.0 (3)
C17—C12—C11121.2 (4)C11—O2—N1103.5 (3)
C6—C1—C2—C3−0.1 (7)C17—C12—C13—C143.3 (7)
O1—C1—C2—C3179.6 (4)C11—C12—C13—C14−179.4 (5)
C1—C2—C3—C40.3 (7)C12—C13—C14—C15−1.8 (8)
C2—C3—C4—C5−0.5 (8)C13—C14—C15—C16−0.1 (8)
C3—C4—C5—C60.4 (8)C13—C14—C15—C18176.3 (5)
O1—C1—C6—C5−179.6 (3)C14—C15—C16—C170.5 (9)
C2—C1—C6—C50.1 (6)C18—C15—C16—C17−176.0 (6)
O1—C1—C6—C7−2.6 (6)C13—C12—C17—C16−3.0 (8)
C2—C1—C6—C7177.1 (4)C11—C12—C17—C16179.7 (5)
C4—C5—C6—C1−0.2 (6)C15—C16—C17—C121.2 (9)
C4—C5—C6—C7−177.2 (4)C24—C19—C20—C210.2 (8)
C1—C6—C7—N1109.5 (4)N1—C19—C20—C21176.7 (5)
C5—C6—C7—N1−73.6 (5)C19—C20—C21—C22−0.3 (10)
C1—C6—C7—C8−3.5 (5)C20—C21—C22—C230.0 (11)
C5—C6—C7—C8173.4 (3)C21—C22—C23—C240.5 (10)
N1—C7—C8—C10150.9 (3)C20—C19—C24—C230.3 (8)
C6—C7—C8—C10−87.8 (4)N1—C19—C24—C23−176.0 (5)
N1—C7—C8—C9−88.8 (4)C22—C23—C24—C19−0.7 (9)
C6—C7—C8—C932.4 (4)C20—C19—N1—O2132.9 (4)
N1—C7—C8—C1129.8 (4)C24—C19—N1—O2−50.7 (5)
C6—C7—C8—C11151.0 (3)C20—C19—N1—C7−117.4 (4)
C10—C8—C9—O160.6 (4)C24—C19—N1—C759.0 (5)
C7—C8—C9—O1−60.3 (4)C6—C7—N1—C1975.1 (4)
C11—C8—C9—O1−172.8 (3)C8—C7—N1—C19−163.5 (3)
C10—C8—C11—O2−118.3 (4)C6—C7—N1—O2−171.3 (3)
C9—C8—C11—O2116.9 (4)C8—C7—N1—O2−49.9 (3)
C7—C8—C11—O21.3 (4)C6—C1—O1—C9−24.7 (5)
C10—C8—C11—C122.8 (5)C2—C1—O1—C9155.6 (4)
C9—C8—C11—C12−122.0 (4)C8—C9—O1—C157.2 (5)
C7—C8—C11—C12122.4 (4)C12—C11—O2—N1−158.9 (3)
O2—C11—C12—C17−147.9 (4)C8—C11—O2—N1−32.6 (4)
C8—C11—C12—C1793.4 (5)C19—N1—O2—C11172.2 (3)
O2—C11—C12—C1334.9 (5)C7—N1—O2—C1153.3 (4)
C8—C11—C12—C13−83.8 (5)
Cg1 and Cg2 are the centroids of the C19–C24 and C12–C17 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C5—H5···Cg10.932.993.701 (5)134
C20—H20···Cg2i0.932.953.803 (6)153
C21—H21···N2ii0.932.563.385 (6)148
C23—H23···N2iii0.932.623.466 (7)151
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C19–C24 and C12–C17 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯Cg10.932.993.701 (5)134
C20—H20⋯Cg2i0.932.953.803 (6)153
C21—H21⋯N2ii0.932.563.385 (6)148
C23—H23⋯N2iii0.932.623.466 (7)151

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and topical antiinflammatory activity of some steroidal [16 alpha, 17 alpha-d]Isoxazolidines.

Authors:  M J Green; R L Tiberi; R Friary; B N Lutsky; J Berkenkoph; X Fernandez; M Monahan
Journal:  J Med Chem       Date:  1982-12       Impact factor: 7.446

3.  Studies on antifungal agents. 23. Novel substituted 3,5-diphenyl-3-(1H-imidazol-1-ylmethyl)- 2-alkylisoxazolidine derivatives.

Authors:  G B Mullen; T R DeCory; J T Mitchell; S D Allen; C R Kinsolving; V S Georgiev
Journal:  J Med Chem       Date:  1988-10       Impact factor: 7.446

4.  1-Methyl-3-(2-methyl-phen-yl)-3,3a,4,9b-tetra-hydro-1H-chromeno[4,3-c][1,2]oxazole-3a-carbonitrile.

Authors:  K Swaminathan; K Sethusankar; G Murugan; M Bakthadoss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-19

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  2 in total

1.  rac-6-Eth-oxy-3,3a,4,9b-tetra-hydro-1,3-diphenyl-1H-chromeno[4,3-c]isoxazole-3a-carbonitrile.

Authors:  S Paramasivam; J Srinivasan; P R Seshadri; M Bakthadoss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-05

2.  rac-Methyl 3-(2-meth-oxy-phen-yl)-1-phenyl-3,3a,4,9b-tetra-hydro-1H-chromeno[4,3-c]isoxazole-3a-carboxyl-ate.

Authors:  S Paramasivam; J Srinivasan; P R Seshadri; M Bakthadoss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-02
  2 in total

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