Literature DB >> 22807711

Poly[[triaqua-(μ(3)-pyridine-2,4,6-tricarboxyl-ato)terbium(III)] monohydrate].

Hong-Lin Zhu1.   

Abstract

The asymmetric unit of the title compound, {[Tb(C(8)H(2)NO(6))(H(2)O)(3)]·H(2)O}(n), contains one Tb(III) ion, one pyridine-2,4,6-tricarboxyl-ate (ptc) anion, three aqua ligands and one lattice water mol-ecule. The Tb(III) ion is nine coordinated by one N and five O atoms from three ptc ligands and by three O atoms from the three aqua ligands in a distorted bicapped trigonal-prismatic geometry. The ptc ligands bridge the Tb(III) ions into a two-dimensional polymeric framework parallel to (100). An extensive O-H⋯O hydrogen-bonding network consolidates the crystal packing.

Entities:  

Year:  2012        PMID: 22807711      PMCID: PMC3393251          DOI: 10.1107/S1600536812028929

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of related complexes, see: Das et al. (2009 ▶); Wang & Zhang (2009 ▶); Wang et al. (2010 ▶); Lin et al. (2011 ▶); Jin et al. (2012 ▶).

Experimental

Crystal data

[Tb(C8H2NO6)(H2O)3]·H2O M = 439.09 Monoclinic, a = 11.936 (2) Å b = 7.3343 (15) Å c = 13.516 (3) Å β = 96.43 (3)° V = 1175.8 (4) Å3 Z = 4 Mo Kα radiation μ = 6.07 mm−1 T = 293 K 0.32 × 0.30 × 0.28 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.164, T max = 0.183 10998 measured reflections 2664 independent reflections 2528 reflections with I > 2σ(I) R int = 0.066

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.067 S = 1.06 2664 reflections 182 parameters H-atom parameters constrained Δρmax = 2.18 e Å−3 Δρmin = −1.11 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028929/cv5315sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028929/cv5315Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Tb(C8H2NO6)(H2O)3]·H2OF(000) = 840
Mr = 439.09Dx = 2.480 Mg m−3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9883 reflections
a = 11.936 (2) Åθ = 3.0–27.4°
b = 7.3343 (15) ŵ = 6.07 mm−1
c = 13.516 (3) ÅT = 293 K
β = 96.43 (3)°Block, colorless
V = 1175.8 (4) Å30.32 × 0.30 × 0.28 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer2664 independent reflections
Radiation source: fine-focus sealed tube2528 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.066
Detector resolution: 0 pixels mm-1θmax = 27.4°, θmin = 3.0°
ω scanh = −15→15
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −9→9
Tmin = 0.164, Tmax = 0.183l = −17→15
10998 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H-atom parameters constrained
wR(F2) = 0.067w = 1/[σ2(Fo2) + (0.0172P)2 + 1.9544P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
2664 reflectionsΔρmax = 2.18 e Å−3
182 parametersΔρmin = −1.11 e Å−3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0031 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Tb0.285028 (12)1.21386 (2)0.704284 (11)0.01088 (9)
N0.2959 (2)1.0044 (4)0.8499 (2)0.0132 (5)
C10.3926 (3)0.9190 (5)0.8812 (2)0.0140 (6)
C20.3992 (3)0.7853 (5)0.9547 (3)0.0165 (7)
H2A0.46690.72660.97500.020*
C30.3023 (3)0.7424 (5)0.9978 (3)0.0167 (7)
C40.2025 (3)0.8380 (5)0.9689 (3)0.0160 (7)
H4A0.13820.81831.00000.019*
C50.2033 (3)0.9641 (5)0.8917 (2)0.0141 (7)
C60.4904 (3)0.9703 (4)0.8255 (2)0.0137 (6)
O10.4681 (2)1.0675 (4)0.74843 (18)0.0186 (5)
O20.58643 (19)0.9109 (3)0.85646 (18)0.0168 (5)
C70.2986 (3)0.5894 (5)1.0710 (2)0.0162 (7)
O30.3445 (2)0.4402 (4)1.05122 (18)0.0209 (5)
O40.2479 (2)0.6092 (4)1.14653 (19)0.0238 (6)
C80.0984 (3)1.0619 (5)0.8451 (3)0.0163 (7)
O50.0075 (2)1.0267 (4)0.8774 (2)0.0250 (6)
O60.1127 (2)1.1688 (4)0.7744 (2)0.0228 (6)
O70.1990 (2)1.5188 (4)0.7163 (2)0.0262 (6)
H7A0.13171.54760.71660.031*
H7B0.25631.58720.72310.031*
O80.1356 (3)1.2471 (4)0.5676 (2)0.0296 (7)
H8A0.08441.32750.56320.050*
H8B0.11671.17460.52370.050*
O90.3781 (2)1.3706 (4)0.85261 (19)0.0243 (6)
H9A0.42251.42720.82400.029*
H9B0.36901.39090.90950.029*
O100.0703 (4)0.4780 (5)0.9079 (3)0.0481 (9)
H10A0.04130.40220.86620.058*
H10B0.13580.47360.88910.058*
U11U22U33U12U13U23
Tb0.00838 (12)0.01147 (13)0.01279 (13)−0.00008 (5)0.00110 (8)0.00033 (5)
N0.0100 (13)0.0133 (13)0.0162 (13)−0.0010 (11)0.0007 (11)0.0008 (11)
C10.0118 (15)0.0129 (16)0.0164 (15)0.0003 (12)−0.0022 (13)−0.0011 (12)
C20.0119 (17)0.0182 (19)0.0188 (18)0.0026 (12)−0.0008 (15)0.0034 (12)
C30.0205 (18)0.0126 (15)0.0168 (18)0.0009 (14)0.0015 (16)0.0023 (13)
C40.0133 (16)0.0159 (17)0.0200 (17)0.0012 (13)0.0073 (14)0.0029 (14)
C50.0141 (15)0.0150 (17)0.0127 (15)0.0000 (12)0.0000 (13)0.0005 (12)
C60.0140 (15)0.0084 (15)0.0185 (16)0.0013 (12)0.0015 (13)−0.0025 (12)
O10.0135 (11)0.0220 (13)0.0209 (12)0.0040 (10)0.0048 (10)0.0084 (10)
O20.0109 (11)0.0172 (13)0.0215 (12)0.0043 (9)−0.0015 (10)−0.0011 (10)
C70.0151 (16)0.0159 (17)0.0173 (16)−0.0001 (13)0.0001 (14)0.0042 (13)
O30.0251 (13)0.0172 (13)0.0209 (12)0.0047 (10)0.0049 (11)0.0059 (10)
O40.0320 (15)0.0197 (14)0.0214 (13)0.0071 (11)0.0108 (12)0.0069 (10)
C80.0132 (15)0.0160 (16)0.0200 (16)0.0008 (13)0.0027 (14)0.0017 (13)
O50.0092 (11)0.0335 (16)0.0321 (14)−0.0009 (10)0.0022 (11)0.0106 (12)
O60.0162 (12)0.0288 (15)0.0242 (14)0.0063 (11)0.0052 (11)0.0133 (11)
O70.0150 (12)0.0184 (14)0.0441 (17)0.0012 (10)−0.0016 (12)0.0001 (12)
O80.0257 (16)0.0348 (16)0.0257 (16)0.0121 (12)−0.0084 (14)−0.0057 (12)
O90.0280 (14)0.0269 (15)0.0180 (12)−0.0104 (12)0.0029 (11)−0.0044 (11)
O100.067 (2)0.041 (2)0.0368 (17)0.0117 (18)0.0046 (18)−0.0032 (15)
Tb—O2i2.324 (2)C5—C81.518 (4)
Tb—O62.382 (3)C6—O21.253 (4)
Tb—O82.432 (3)C6—O11.266 (4)
Tb—O12.448 (2)O2—Tbiii2.324 (2)
Tb—O92.465 (3)C7—O41.253 (4)
Tb—O72.474 (3)C7—O31.266 (4)
Tb—N2.488 (3)C7—Tbiv2.878 (3)
Tb—O4ii2.518 (3)O3—Tbiv2.528 (3)
Tb—O3ii2.528 (3)O4—Tbiv2.518 (3)
Tb—C7ii2.878 (3)C8—O51.241 (4)
N—C51.329 (4)C8—O61.263 (4)
N—C11.340 (4)O7—H7A0.8302
C1—C21.392 (5)O7—H7B0.8454
C1—C61.506 (5)O8—H8A0.8470
C2—C31.387 (6)O8—H8B0.8095
C2—H2A0.9293O9—H9A0.8057
C3—C41.400 (5)O9—H9B0.8018
C3—C71.500 (5)O10—H10A0.8390
C4—C51.396 (5)O10—H10B0.8498
C4—H4A0.9271
O2i—Tb—O6149.38 (9)C5—N—C1119.3 (3)
O2i—Tb—O897.26 (11)C5—N—Tb120.1 (2)
O6—Tb—O873.97 (11)C1—N—Tb120.3 (2)
O2i—Tb—O175.64 (9)N—C1—C2122.2 (3)
O6—Tb—O1128.99 (8)N—C1—C6114.5 (3)
O8—Tb—O1141.98 (10)C2—C1—C6123.2 (3)
O2i—Tb—O975.06 (9)C3—C2—C1118.5 (3)
O6—Tb—O994.10 (10)C3—C2—H2A120.6
O8—Tb—O9142.78 (10)C1—C2—H2A120.9
O1—Tb—O972.40 (10)C2—C3—C4119.5 (3)
O2i—Tb—O775.90 (9)C2—C3—C7122.3 (3)
O6—Tb—O773.49 (10)C4—C3—C7118.2 (3)
O8—Tb—O771.63 (10)C5—C4—C3117.6 (3)
O1—Tb—O7138.26 (9)C5—C4—H4A121.2
O9—Tb—O771.18 (9)C3—C4—H4A121.2
O2i—Tb—N133.27 (9)N—C5—C4122.7 (3)
O6—Tb—N64.57 (9)N—C5—C8113.9 (3)
O8—Tb—N129.16 (11)C4—C5—C8123.3 (3)
O1—Tb—N64.56 (9)O2—C6—O1124.9 (3)
O9—Tb—N70.47 (9)O2—C6—C1118.5 (3)
O7—Tb—N119.42 (10)O1—C6—C1116.6 (3)
O2i—Tb—O4ii125.16 (9)C6—O1—Tb123.2 (2)
O6—Tb—O4ii82.13 (10)C6—O2—Tbiii135.5 (2)
O8—Tb—O4ii76.72 (10)O4—C7—O3122.2 (3)
O1—Tb—O4ii77.54 (9)O4—C7—C3120.2 (3)
O9—Tb—O4ii137.60 (9)O3—C7—C3117.6 (3)
O7—Tb—O4ii144.19 (9)O4—C7—Tbiv60.86 (18)
N—Tb—O4ii69.89 (9)O3—C7—Tbiv61.32 (18)
O2i—Tb—O3ii74.43 (9)C3—C7—Tbiv177.3 (2)
O6—Tb—O3ii126.72 (10)C7—O3—Tbiv92.6 (2)
O8—Tb—O3ii70.88 (10)C7—O4—Tbiv93.4 (2)
O1—Tb—O3ii71.25 (9)O5—C8—O6126.4 (3)
O9—Tb—O3ii137.04 (9)O5—C8—C5118.0 (3)
O7—Tb—O3ii127.92 (9)O6—C8—C5115.6 (3)
N—Tb—O3ii112.14 (9)C8—O6—Tb125.7 (2)
O4ii—Tb—O3ii51.80 (9)Tb—O7—H7A129.7
O2i—Tb—C7ii100.00 (10)Tb—O7—H7B101.9
O6—Tb—C7ii104.70 (10)H7A—O7—H7B128.4
O8—Tb—C7ii71.93 (10)Tb—O8—H8A125.8
O1—Tb—C7ii72.68 (9)Tb—O8—H8B127.7
O9—Tb—C7ii144.85 (10)H8A—O8—H8B105.4
O7—Tb—C7ii142.43 (9)Tb—O9—H9A96.4
N—Tb—C7ii90.95 (10)Tb—O9—H9B140.3
O4ii—Tb—C7ii25.75 (10)H9A—O9—H9B122.1
O3ii—Tb—C7ii26.05 (9)H10A—O10—H10B95.6
D—H···AD—HH···AD···AD—H···A
O7—H7A···O5v0.831.982.642 (4)136
O7—H7B···O4vi0.842.452.966 (4)120
O8—H8A···O5v0.852.042.822 (4)152
O8—H8B···O10ii0.811.952.760 (5)174
O9—H9A···O1i0.812.002.808 (4)179
O9—H9B···O3vii0.812.002.805 (4)179
O10—H10A···O6viii0.842.332.977 (5)134
O10—H10B···O7viii0.852.553.169 (5)130
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A D⋯A D—H⋯A
O7—H7A⋯O5i 0.831.982.642 (4)136
O7—H7B⋯O4ii 0.842.452.966 (4)120
O8—H8A⋯O5i 0.852.042.822 (4)152
O8—H8B⋯O10iii 0.811.952.760 (5)174
O9—H9A⋯O1iv 0.812.002.808 (4)179
O9—H9B⋯O3v 0.812.002.805 (4)179
O10—H10A⋯O6vi 0.842.332.977 (5)134
O10—H10B⋯O7vi 0.852.553.169 (5)130

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Poly[[triaqua-(μ(3)-pyridine-2,4,6-tri-car-boxyl-ato)gadolinium(III)] monohydrate].

Authors:  Hong-Sheng Wang; Wan-Qiang Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

3.  Coordination polymers with pyridine-2,4,6-tricarboxylic acid and alkaline-earth/lanthanide/transition metals: synthesis and X-ray structures.

Authors:  Madhab C Das; Sujit K Ghosh; E Carolina Sañudo; Parimal K Bharadwaj
Journal:  Dalton Trans       Date:  2009-01-26       Impact factor: 4.390

  3 in total

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