Literature DB >> 21578044

Poly[[triaqua-(μ(3)-pyridine-2,4,6-tri-car-boxyl-ato)gadolinium(III)] monohydrate].

Hong-Sheng Wang1, Wan-Qiang Zhang.   

Abstract

The title compound, {[Gd(C(8)H(2)NO(6))(H(2)O)(3)]·H(2)O}(n), was obtained in pan class="Chemical">water under hydro-thermal conditions. The Gd(III) ions are nine-coordinated by two O and one pan class="Disease">N atoms from one pyridine-2,4,6-tricarboxyl-ate ligand, two O atoms from another ligand, one O atom from a third ligand and three coordinated water mol-ecules. Each ligand binds three metal centers. Two-dimensional layers are formed through the Gd-O bonds and the layers are linked by O-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2009        PMID: 21578044      PMCID: PMC2970953          DOI: 10.1107/S1600536809038793

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Gao et al. (2006 ▶); Ghosh & Bharadwaj (2005 ▶); Wang et al. (2007 ▶); Fu & Xu (2008 ▶); Li et al. (2008 ▶). For general background to pan class="Chemical">lanthanide-organic frameworks and their properties, see: Parker (2000 ▶); Tobisch (2005 ▶); Pan et al. (2003 ▶).

Experimental

Crystal data

[Gd(C8H2NO6)(H2O)3]·H2O M = 437.42 Monoclinic, a = 11.896 (3) Å b = 7.2696 (14) Å c = 13.505 (3) Å β = 96.259 (3)° V = 1160.9 (4) Å3 Z = 4 Mo Kα radiation μ = 5.77 mm−1 T = 113 K 0.12 × 0.10 × 0.08 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (REQAB; Jacobson, 1998 ▶) T min = 0.544, T max = 0.655 10599 measured reflections 2776 independent reflections 2366 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.021 wR(F 2) = 0.049 S = 1.04 2776 reflections 206 parameters 8 restraints pan class="Disease">H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.64 e Å−3 Δρmin = −1.29 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: CrystalStructure (Rigaku/MSC, 2005 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809038793/zq2008sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809038793/zq2008Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Gd(C8H2NO6)(H2O)3]·H2OF(000) = 836
Mr = 437.42Dx = 2.503 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71070 Å
Hall symbol: -P 2ybcCell parameters from 3775 reflections
a = 11.896 (3) Åθ = 1.7–28.7°
b = 7.2696 (14) ŵ = 5.77 mm1
c = 13.505 (3) ÅT = 113 K
β = 96.259 (3)°Block, colourless
V = 1160.9 (4) Å30.12 × 0.10 × 0.08 mm
Z = 4
Rigaku Saturn diffractometer2776 independent reflections
Radiation source: rotating anode2366 reflections with I > 2σ(I)
confocalRint = 0.038
Detector resolution: 7.31 pixels mm-1θmax = 27.9°, θmin = 1.7°
ω scansh = −15→15
Absorption correction: multi-scan (REQAB; Jacobson, 1998)k = −8→9
Tmin = 0.544, Tmax = 0.655l = −17→17
10599 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.021Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.049H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0242P)2] where P = (Fo2 + 2Fc2)/3
2776 reflections(Δ/σ)max = 0.001
206 parametersΔρmax = 0.64 e Å3
8 restraintsΔρmin = −1.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Gd10.283337 (12)0.28362 (2)0.703522 (11)0.00496 (6)
O10.46782 (18)0.4287 (3)0.74763 (16)0.0085 (5)
O20.58731 (18)0.5825 (3)0.85710 (16)0.0080 (4)
O30.3449 (2)1.0594 (3)1.05119 (16)0.0101 (5)
O40.25022 (19)0.8881 (3)1.14877 (16)0.0111 (5)
O50.10951 (19)0.3347 (3)0.77338 (17)0.0118 (5)
O60.00718 (19)0.4715 (3)0.88248 (16)0.0105 (5)
O70.3762 (2)0.1238 (3)0.85200 (17)0.0109 (5)
H7A0.425 (3)0.051 (4)0.838 (3)0.016*
H7B0.369 (3)0.110 (5)0.9117 (19)0.016*
O80.1937 (2)−0.0211 (3)0.71872 (18)0.0117 (5)
H8A0.129 (2)−0.034 (5)0.690 (3)0.018*
H8B0.225 (3)−0.109 (4)0.709 (3)0.018*
O90.1329 (2)0.2581 (3)0.56658 (18)0.0135 (5)
H9A0.081 (3)0.185 (4)0.571 (3)0.020*
H9B0.121 (3)0.314 (5)0.513 (2)0.020*
O100.0781 (2)0.4862 (3)0.40873 (19)0.0194 (6)
H10A0.106 (4)0.505 (6)0.357 (2)0.029*
H10B0.016 (3)0.531 (5)0.392 (3)0.029*
N10.2963 (2)0.4907 (3)0.85098 (19)0.0060 (5)
C10.3938 (3)0.5761 (4)0.8822 (2)0.0055 (6)
C20.4007 (3)0.7107 (4)0.9553 (2)0.0073 (6)
H20.46990.77300.97440.009*
C30.3035 (3)0.7525 (4)1.0003 (2)0.0082 (6)
C40.2043 (3)0.6563 (4)0.9712 (2)0.0073 (6)
H40.13850.67611.00370.009*
C50.2035 (3)0.5320 (4)0.8944 (2)0.0070 (6)
C60.4912 (3)0.5242 (4)0.8255 (2)0.0068 (6)
C70.3007 (3)0.9081 (4)1.0720 (2)0.0077 (6)
C80.0974 (3)0.4387 (4)0.8469 (2)0.0072 (6)
U11U22U33U12U13U23
Gd10.00489 (8)0.00531 (9)0.00486 (9)0.00011 (6)0.00130 (6)−0.00021 (6)
O10.0066 (11)0.0089 (11)0.0103 (12)−0.0013 (8)0.0017 (9)−0.0024 (9)
O20.0051 (11)0.0103 (11)0.0082 (11)−0.0021 (8)−0.0006 (9)0.0004 (8)
O30.0137 (12)0.0071 (11)0.0099 (12)−0.0012 (9)0.0034 (9)−0.0026 (9)
O40.0143 (13)0.0104 (12)0.0094 (12)−0.0038 (9)0.0059 (9)−0.0025 (9)
O50.0075 (12)0.0142 (11)0.0142 (12)−0.0027 (9)0.0030 (9)−0.0062 (9)
O60.0054 (11)0.0150 (12)0.0111 (12)0.0014 (9)0.0015 (9)−0.0024 (9)
O70.0132 (13)0.0111 (12)0.0086 (12)0.0047 (9)0.0023 (10)0.0035 (9)
O80.0084 (12)0.0096 (12)0.0166 (13)0.0008 (9)−0.0005 (10)−0.0012 (10)
O90.0135 (13)0.0173 (13)0.0088 (12)−0.0061 (9)−0.0027 (10)0.0041 (9)
O100.0237 (16)0.0199 (13)0.0141 (14)0.0057 (11)0.0010 (12)0.0048 (11)
N10.0057 (13)0.0058 (12)0.0065 (13)0.0006 (9)0.0012 (10)0.0008 (10)
C10.0072 (15)0.0040 (14)0.0056 (15)−0.0021 (11)0.0024 (12)0.0023 (11)
C20.0071 (15)0.0054 (14)0.0094 (16)−0.0029 (11)0.0015 (12)0.0004 (12)
C30.0097 (17)0.0102 (16)0.0042 (15)0.0004 (11)−0.0011 (12)0.0011 (11)
C40.0061 (15)0.0070 (14)0.0092 (16)0.0013 (11)0.0026 (12)0.0021 (12)
C50.0059 (15)0.0073 (15)0.0083 (16)0.0010 (11)0.0021 (12)0.0009 (12)
C60.0095 (16)0.0038 (14)0.0071 (16)0.0000 (11)0.0007 (12)0.0014 (11)
C70.0054 (15)0.0101 (15)0.0070 (16)0.0018 (11)−0.0017 (12)0.0000 (12)
C80.0065 (16)0.0060 (15)0.0095 (16)−0.0008 (11)0.0023 (12)0.0021 (12)
Gd1—O2i2.335 (2)O7—H7B0.83 (2)
Gd1—O52.393 (2)O8—H8A0.82 (3)
Gd1—O92.437 (3)O8—H8B0.75 (2)
Gd1—O12.449 (2)O9—H9A0.82 (2)
Gd1—O72.471 (2)O9—H9B0.83 (2)
Gd1—O82.477 (2)O10—H10A0.81 (2)
Gd1—N12.488 (2)O10—H10B0.82 (3)
Gd1—O4ii2.517 (2)N1—C51.339 (4)
Gd1—O3ii2.530 (2)N1—C11.342 (4)
Gd1—C7ii2.880 (3)C1—C21.386 (4)
O1—C61.266 (4)C1—C61.504 (4)
O2—C61.250 (4)C2—C31.397 (4)
O2—Gd1iii2.335 (2)C2—H20.9500
O3—C71.264 (4)C3—C41.391 (4)
O3—Gd1iv2.530 (2)C3—C71.492 (4)
O4—C71.261 (4)C4—C51.374 (4)
O4—Gd1iv2.517 (2)C4—H40.9500
O5—C81.269 (4)C5—C81.513 (4)
O6—C81.245 (4)C7—Gd1iv2.880 (3)
O7—H7A0.82 (2)
O2i—Gd1—O5150.00 (8)C6—O1—Gd1123.22 (19)
O2i—Gd1—O998.27 (8)C6—O2—Gd1iii134.9 (2)
O5—Gd1—O973.52 (8)C7—O3—Gd1iv92.69 (17)
O2i—Gd1—O175.39 (7)C7—O4—Gd1iv93.35 (18)
O5—Gd1—O1128.84 (7)C8—O5—Gd1125.3 (2)
O9—Gd1—O1141.45 (7)Gd1—O7—H7A112 (3)
O2i—Gd1—O774.73 (7)Gd1—O7—H7B140 (3)
O5—Gd1—O794.71 (8)H7A—O7—H7B107 (4)
O9—Gd1—O7143.75 (8)Gd1—O8—H8A117 (3)
O1—Gd1—O772.28 (7)Gd1—O8—H8B121 (3)
O2i—Gd1—O877.00 (7)H8A—O8—H8B106 (4)
O5—Gd1—O873.01 (8)Gd1—O9—H9A119 (3)
O9—Gd1—O872.98 (8)Gd1—O9—H9B131 (3)
O1—Gd1—O8138.37 (7)H9A—O9—H9B109 (4)
O7—Gd1—O870.78 (8)H10A—O10—H10B98 (4)
O2i—Gd1—N1132.39 (8)C5—N1—C1118.9 (3)
O5—Gd1—N164.62 (8)C5—N1—Gd1120.3 (2)
O9—Gd1—N1129.04 (8)C1—N1—Gd1120.47 (19)
O1—Gd1—N164.48 (7)N1—C1—C2122.2 (3)
O7—Gd1—N169.63 (8)N1—C1—C6114.3 (3)
O8—Gd1—N1117.68 (8)C2—C1—C6123.4 (3)
O2i—Gd1—O4ii125.38 (7)C1—C2—C3118.4 (3)
O5—Gd1—O4ii81.63 (7)C1—C2—H2120.8
O9—Gd1—O4ii76.75 (8)C3—C2—H2120.8
O1—Gd1—O4ii76.74 (7)C4—C3—C2119.0 (3)
O7—Gd1—O4ii136.55 (8)C4—C3—C7119.1 (3)
O8—Gd1—O4ii144.83 (8)C2—C3—C7121.7 (3)
N1—Gd1—O4ii69.84 (8)C5—C4—C3118.7 (3)
O2i—Gd1—O3ii74.76 (7)C5—C4—H4120.7
O5—Gd1—O3ii126.13 (8)C3—C4—H4120.7
O9—Gd1—O3ii70.79 (8)N1—C5—C4122.7 (3)
O1—Gd1—O3ii70.88 (7)N1—C5—C8113.8 (3)
O7—Gd1—O3ii136.76 (8)C4—C5—C8123.4 (3)
O8—Gd1—O3ii129.52 (7)O2—C6—O1125.4 (3)
N1—Gd1—O3ii112.32 (8)O2—C6—C1117.9 (3)
O4ii—Gd1—O3ii51.91 (7)O1—C6—C1116.7 (3)
O2i—Gd1—C7ii100.19 (8)O4—C7—O3122.0 (3)
O5—Gd1—C7ii104.20 (8)O4—C7—C3119.5 (3)
O9—Gd1—C7ii71.79 (8)O3—C7—C3118.4 (3)
O1—Gd1—C7ii72.09 (8)O4—C7—Gd1iv60.73 (15)
O7—Gd1—C7ii144.11 (8)O3—C7—Gd1iv61.32 (15)
O8—Gd1—C7ii143.83 (9)C3—C7—Gd1iv176.6 (2)
N1—Gd1—C7ii91.16 (8)O6—C8—O5126.3 (3)
O4ii—Gd1—C7ii25.92 (7)O6—C8—C5117.7 (3)
O3ii—Gd1—C7ii25.99 (7)O5—C8—C5116.0 (3)
O2i—Gd1—O1—C6−147.2 (2)Gd1—N1—C1—C2171.2 (2)
O5—Gd1—O1—C612.7 (3)C5—N1—C1—C6−177.8 (3)
O9—Gd1—O1—C6127.9 (2)Gd1—N1—C1—C6−4.0 (3)
O7—Gd1—O1—C6−68.8 (2)N1—C1—C2—C32.6 (4)
O8—Gd1—O1—C6−97.2 (2)C6—C1—C2—C3177.5 (3)
N1—Gd1—O1—C66.5 (2)C1—C2—C3—C40.9 (4)
O4ii—Gd1—O1—C680.3 (2)C1—C2—C3—C7−173.7 (3)
O3ii—Gd1—O1—C6134.2 (2)C2—C3—C4—C5−4.3 (5)
C7ii—Gd1—O1—C6106.8 (2)C7—C3—C4—C5170.5 (3)
O2i—Gd1—O5—C8133.9 (2)C1—N1—C5—C4−1.1 (4)
O9—Gd1—O5—C8−148.4 (3)Gd1—N1—C5—C4−174.9 (2)
O1—Gd1—O5—C8−4.4 (3)C1—N1—C5—C8175.1 (3)
O7—Gd1—O5—C866.6 (2)Gd1—N1—C5—C81.3 (3)
O8—Gd1—O5—C8134.8 (3)C3—C4—C5—N14.6 (5)
N1—Gd1—O5—C81.8 (2)C3—C4—C5—C8−171.3 (3)
O4ii—Gd1—O5—C8−69.8 (2)Gd1iii—O2—C6—O162.9 (4)
O3ii—Gd1—O5—C8−98.3 (2)Gd1iii—O2—C6—C1−115.0 (3)
C7ii—Gd1—O5—C8−82.7 (2)Gd1—O1—C6—O2171.1 (2)
O2i—Gd1—N1—C5−151.4 (2)Gd1—O1—C6—C1−11.0 (3)
O5—Gd1—N1—C5−1.5 (2)N1—C1—C6—O2−172.4 (3)
O9—Gd1—N1—C536.4 (3)C2—C1—C6—O212.4 (4)
O1—Gd1—N1—C5173.1 (2)N1—C1—C6—O19.6 (4)
O7—Gd1—N1—C5−107.4 (2)C2—C1—C6—O1−165.6 (3)
O8—Gd1—N1—C5−53.6 (2)Gd1iv—O4—C7—O30.5 (3)
O4ii—Gd1—N1—C588.6 (2)Gd1iv—O4—C7—C3−176.1 (3)
O3ii—Gd1—N1—C5119.2 (2)Gd1iv—O3—C7—O4−0.5 (3)
C7ii—Gd1—N1—C5103.6 (2)Gd1iv—O3—C7—C3176.1 (3)
O2i—Gd1—N1—C134.9 (3)C4—C3—C7—O445.8 (4)
O5—Gd1—N1—C1−175.3 (2)C2—C3—C7—O4−139.6 (3)
O9—Gd1—N1—C1−137.4 (2)C4—C3—C7—O3−131.0 (3)
O1—Gd1—N1—C1−0.6 (2)C2—C3—C7—O343.6 (4)
O7—Gd1—N1—C178.9 (2)Gd1—O5—C8—O6177.7 (2)
O8—Gd1—N1—C1132.6 (2)Gd1—O5—C8—C5−1.8 (4)
O4ii—Gd1—N1—C1−85.1 (2)N1—C5—C8—O6−179.3 (3)
O3ii—Gd1—N1—C1−54.5 (2)C4—C5—C8—O6−3.1 (4)
C7ii—Gd1—N1—C1−70.1 (2)N1—C5—C8—O50.2 (4)
C5—N1—C1—C2−2.6 (4)C4—C5—C8—O5176.4 (3)
D—H···AD—HH···AD···AD—H···A
O7—H7A···O1i0.82 (2)2.02 (3)2.794 (3)157 (4)
O7—H7B···O3v0.83 (2)1.97 (2)2.795 (3)175 (4)
O8—H8A···O6vi0.82 (3)1.80 (3)2.621 (3)171 (4)
O8—H8B···O4vii0.75 (2)2.22 (3)2.933 (3)158 (4)
O9—H9A···O6vi0.82 (2)2.01 (3)2.800 (3)161 (4)
O9—H9B···O100.83 (2)1.91 (3)2.723 (3)166 (4)
O10—H10A···O8vii0.81 (2)2.24 (3)3.051 (4)173 (4)
O10—H10B···O9viii0.82 (3)2.45 (3)3.169 (4)148 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O7—H7A⋯O1i0.82 (2)2.02 (3)2.794 (3)157 (4)
O7—H7B⋯O3ii0.83 (2)1.97 (2)2.795 (3)175 (4)
O8—H8A⋯O6iii0.82 (3)1.80 (3)2.621 (3)171 (4)
O8—H8B⋯O4iv0.75 (2)2.22 (3)2.933 (3)158 (4)
O9—H9A⋯O6iii0.82 (2)2.01 (3)2.800 (3)161 (4)
O9—H9B⋯O100.83 (2)1.91 (3)2.723 (3)166 (4)
O10—H10A⋯O8iv0.81 (2)2.24 (3)3.051 (4)173 (4)
O10—H10B⋯O9v0.82 (3)2.45 (3)3.169 (4)148 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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