Literature DB >> 22803641

Novel B(12)-dependent acyl-CoA mutases and their biotechnological potential.

Valentin Cracan1, Ruma Banerjee.   

Abstract

The recent spate of discoveries of novel acyl-CoA mutases has engendered a growing appreciation for the diversity of 5'-deoxyadenosylcobalamin-dependent rearrangement reactions. The prototype of the reaction catalyzed by these enzymes is the 1,2 interchange of a hydrogen atom with a thioester group leading to a change in the degree of carbon skeleton branching. These enzymes are predicted to share common architectural elements: a Rossman fold and a triose phosphate isomerase (TIM)-barrel domain for binding cofactor and substrate, respectively. Within this family, methylmalonyl-CoA mutase (MCM) is the best studied and is the only member found in organisms ranging from bacteria to man. MCM interconverts (2R)-methylmalonyl-CoA and succinyl-CoA. The more recently discovered family members include isobutyryl-CoA mutase (ICM), which interconverts isobutyryl-CoA and n-butyryl-CoA; ethylmalonyl-CoA mutase, which interconverts (2R)-ethylmalonyl-CoA and (2S)-methylsuccinyl-CoA; and 2-hydroxyisobutyryl-CoA mutase, which interconverts 2-hydroxyisobutyryl-CoA and (3S)-hydroxybutyryl-CoA. A variant in which the two subunits of ICM are fused to a G-protein chaperone, IcmF, has been described recently. In addition to its ICM activity, IcmF also catalyzes the interconversion of isovaleryl-CoA and pivalyl-CoA. This review focuses on the involvement of acyl-CoA mutases in central carbon and secondary bacterial metabolism and on their biotechnological potential for applications ranging from bioremediation to stereospecific synthesis of C2-C5 carboxylic acids and alcohols, and for production of potential commodity and specialty chemicals.

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Year:  2012        PMID: 22803641      PMCID: PMC3448797          DOI: 10.1021/bi300827v

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  52 in total

Review 1.  Radical mechanisms of enzymatic catalysis.

Authors:  P A Frey
Journal:  Annu Rev Biochem       Date:  2001       Impact factor: 23.643

2.  Identification of additional players in the alternative biosynthesis pathway to isovaleryl-CoA in the myxobacterium Myxococcus xanthus.

Authors:  Helge B Bode; Michael W Ring; Gertrud Schwär; Matthias O Altmeyer; Carsten Kegler; Ivy R Jose; Mitchell Singer; Rolf Müller
Journal:  Chembiochem       Date:  2009-01-05       Impact factor: 3.164

3.  Anaerobic metabolism of indoleacetate.

Authors:  Christa Ebenau-Jehle; Markus Thomas; Gernot Scharf; Daniel Kockelkorn; Bettina Knapp; Karola Schühle; Johann Heider; Georg Fuchs
Journal:  J Bacteriol       Date:  2012-03-23       Impact factor: 3.490

4.  Anaerobic mineralization of quaternary carbon atoms: isolation of denitrifying bacteria on pivalic acid (2,2-dimethylpropionic acid).

Authors:  Christina Probian; Annika Wülfing; Jens Harder
Journal:  Appl Environ Microbiol       Date:  2003-03       Impact factor: 4.792

5.  Formation of alkenes via degradation of tert-alkyl ethers and alcohols by Aquincola tertiaricarbonis L108 and Methylibium spp.

Authors:  Franziska Schäfer; Liudmila Muzica; Judith Schuster; Naemi Treuter; Mònica Rosell; Hauke Harms; Roland H Müller; Thore Rohwerder
Journal:  Appl Environ Microbiol       Date:  2011-07-08       Impact factor: 4.792

6.  Glutamate mutase from Clostridium cochlearium: the structure of a coenzyme B12-dependent enzyme provides new mechanistic insights.

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Journal:  Structure       Date:  1999-08-15       Impact factor: 5.006

7.  How coenzyme B12 radicals are generated: the crystal structure of methylmalonyl-coenzyme A mutase at 2 A resolution.

Authors:  F Mancia; N H Keep; A Nakagawa; P F Leadlay; S McSweeney; B Rasmussen; P Bösecke; O Diat; P R Evans
Journal:  Structure       Date:  1996-03-15       Impact factor: 5.006

Review 8.  Biosynthesis of 2-hydroxyisobutyric acid (2-HIBA) from renewable carbon.

Authors:  Thore Rohwerder; Roland H Müller
Journal:  Microb Cell Fact       Date:  2010-02-25       Impact factor: 5.328

9.  MeaB is a component of the methylmalonyl-CoA mutase complex required for protection of the enzyme from inactivation.

Authors:  Natalia Korotkova; Mary E Lidstrom
Journal:  J Biol Chem       Date:  2004-01-20       Impact factor: 5.157

10.  How a protein binds B12: A 3.0 A X-ray structure of B12-binding domains of methionine synthase.

Authors:  C L Drennan; S Huang; J T Drummond; R G Matthews; M L Ludwig
Journal:  Science       Date:  1994-12-09       Impact factor: 47.728

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  8 in total

1.  Structural Basis for Substrate Specificity in Adenosylcobalamin-dependent Isobutyryl-CoA Mutase and Related Acyl-CoA Mutases.

Authors:  Marco Jost; David A Born; Valentin Cracan; Ruma Banerjee; Catherine L Drennan
Journal:  J Biol Chem       Date:  2015-08-28       Impact factor: 5.157

2.  Structural basis of the stereospecificity of bacterial B12-dependent 2-hydroxyisobutyryl-CoA mutase.

Authors:  Nadya Kurteva-Yaneva; Michael Zahn; M-Teresa Weichler; Robert Starke; Hauke Harms; Roland H Müller; Norbert Sträter; Thore Rohwerder
Journal:  J Biol Chem       Date:  2015-02-26       Impact factor: 5.157

3.  Visualization of a radical B12 enzyme with its G-protein chaperone.

Authors:  Marco Jost; Valentin Cracan; Paul A Hubbard; Ruma Banerjee; Catherine L Drennan
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-09       Impact factor: 11.205

4.  Cofactor Editing by the G-protein Metallochaperone Domain Regulates the Radical B12 Enzyme IcmF.

Authors:  Zhu Li; Kenichi Kitanishi; Umar T Twahir; Valentin Cracan; Derrell Chapman; Kurt Warncke; Ruma Banerjee
Journal:  J Biol Chem       Date:  2017-01-27       Impact factor: 5.157

5.  Engineered and Native Coenzyme B12-dependent Isovaleryl-CoA/Pivalyl-CoA Mutase.

Authors:  Kenichi Kitanishi; Valentin Cracan; Ruma Banerjee
Journal:  J Biol Chem       Date:  2015-07-01       Impact factor: 5.157

6.  Allosteric Regulation of Oligomerization by a B12 Trafficking G-Protein Is Corrupted in Methylmalonic Aciduria.

Authors:  Markus Ruetz; Gregory C Campanello; Liam McDevitt; Adam L Yokom; Pramod K Yadav; David Watkins; David S Rosenblatt; Melanie D Ohi; Daniel R Southworth; Ruma Banerjee
Journal:  Cell Chem Biol       Date:  2019-05-02       Impact factor: 8.116

7.  Thermophilic Coenzyme B12-Dependent Acyl Coenzyme A (CoA) Mutase from Kyrpidia tusciae DSM 2912 Preferentially Catalyzes Isomerization of (R)-3-Hydroxybutyryl-CoA and 2-Hydroxyisobutyryl-CoA.

Authors:  Maria-Teresa Weichler; Nadya Kurteva-Yaneva; Denise Przybylski; Judith Schuster; Roland H Müller; Hauke Harms; Thore Rohwerder
Journal:  Appl Environ Microbiol       Date:  2015-04-24       Impact factor: 4.792

8.  Extracellular Matrix Proteome and Phosphoproteome of Potato Reveals Functionally Distinct and Diverse Canonical and Non-Canonical Proteoforms.

Authors:  Eman Elagamey; Kanika Narula; Arunima Sinha; Pooja Rani Aggarwal; Sudip Ghosh; Niranjan Chakraborty; Subhra Chakraborty
Journal:  Proteomes       Date:  2016-06-24
  8 in total

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