Literature DB >> 22798941

1-(2-Chloro-benz-yl)-3-methyl-2,6-diphenyl-piperidine.

Chennan Ramalingan, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(25)H(26)ClN, the piperidine ring has a chair conformation with all ring substituents in equatorial positions. The dihedral angle formed between the chloro-benzene ring and the flanking phenyl rings are 74.91 (18) and 47.86 (17)°. The chloro substituent is anti to the piperidine N atom. In the crystal, centrosymmetrically related mol-ecules aggregate via π-π inter-actions occurring between chloro-benzene rings [centroid-centroid distance = 3.778 (2) Å] and these are linked into linear supra-molecular chains along the a axis by C-H⋯π inter-actions occurring between the phenyl rings.

Entities:  

Year:  2012        PMID: 22798941      PMCID: PMC3394076          DOI: 10.1107/S1600536812029200

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of piperidine derivatives, see: Ramalingan et al. (2004 ▶); Ramachandran et al. (2011 ▶). For a related structure, see: Ramalingan et al. (2012 ▶).

Experimental

Crystal data

C25H26ClN M = 375.92 Triclinic, a = 10.0878 (7) Å b = 10.2837 (5) Å c = 11.3583 (7) Å α = 94.150 (5)° β = 107.713 (6)° γ = 111.065 (5)° V = 1025.32 (11) Å3 Z = 2 Mo Kα radiation μ = 0.20 mm−1 T = 100 K 0.25 × 0.15 × 0.03 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.495, T max = 1.000 7033 measured reflections 4678 independent reflections 2850 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.074 wR(F 2) = 0.185 S = 1.03 4678 reflections 244 parameters 12 restraints H-atom parameters constrained Δρmax = 0.72 e Å−3 Δρmin = −0.47 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812029200/hb6872sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029200/hb6872Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812029200/hb6872Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H26ClNZ = 2
Mr = 375.92F(000) = 400
Triclinic, P1Dx = 1.218 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 10.0878 (7) ÅCell parameters from 1908 reflections
b = 10.2837 (5) Åθ = 2.4–27.5°
c = 11.3583 (7) ŵ = 0.20 mm1
α = 94.150 (5)°T = 100 K
β = 107.713 (6)°Plate, colourless
γ = 111.065 (5)°0.25 × 0.15 × 0.03 mm
V = 1025.32 (11) Å3
Agilent SuperNova Dual diffractometer with an Atlas detector4678 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2850 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.034
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.4°
ω scanh = −13→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)k = −13→13
Tmin = 0.495, Tmax = 1.000l = −13→14
7033 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.074Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.185H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0541P)2 + 1.0947P] where P = (Fo2 + 2Fc2)/3
4678 reflections(Δ/σ)max < 0.001
244 parametersΔρmax = 0.72 e Å3
12 restraintsΔρmin = −0.47 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.71459 (12)0.30264 (9)0.23928 (9)0.0512 (3)
C10.8802 (4)0.4580 (4)0.3038 (3)0.0395 (8)
C21.0149 (5)0.4438 (5)0.3581 (3)0.0522 (10)
H21.01700.35230.35910.063*
C31.1464 (5)0.5651 (6)0.4110 (4)0.0622 (12)
H31.23960.55600.44940.075*
C41.1470 (4)0.7006 (5)0.4099 (3)0.0482 (10)
H41.23860.78360.44620.058*
C51.0061 (4)0.7099 (4)0.3528 (3)0.0395 (8)
H51.00390.80130.35050.047*
C60.8716 (3)0.5909 (3)0.3004 (3)0.0284 (7)
N10.7224 (3)0.7408 (2)0.2310 (2)0.0260 (6)
C70.7188 (3)0.5974 (3)0.2470 (3)0.0287 (7)
H7A0.66230.53150.16370.034*
H7B0.66140.56250.30320.034*
C80.6816 (4)0.7457 (3)0.0938 (3)0.0308 (7)
H80.57970.66710.04710.037*
C90.6704 (4)0.8861 (3)0.0710 (3)0.0390 (8)
H9A0.63830.8849−0.02070.047*
H9B0.77150.96520.11280.047*
C100.5567 (4)0.9107 (4)0.1226 (3)0.0386 (8)
H10A0.55261.00330.10860.046*
H10B0.45420.83490.07730.046*
C110.6033 (4)0.9101 (3)0.2629 (3)0.0367 (8)
H110.70500.98980.30710.044*
C120.6174 (4)0.7696 (3)0.2865 (3)0.0289 (7)
H120.51450.69030.24620.035*
C130.4882 (5)0.9353 (4)0.3160 (3)0.0508 (10)
H13A0.48191.02560.29980.076*
H13B0.52200.93900.40720.076*
H13C0.38800.85730.27470.076*
C140.6717 (3)0.7731 (3)0.4273 (3)0.0257 (6)
C150.8186 (4)0.8583 (3)0.5027 (3)0.0373 (8)
H150.88730.91190.46530.045*
C160.8687 (4)0.8678 (4)0.6320 (3)0.0425 (9)
H160.97140.92610.68220.051*
C170.7699 (4)0.7930 (4)0.6883 (3)0.0430 (9)
H170.80300.80170.77730.052*
C180.6248 (5)0.7071 (4)0.6151 (3)0.0537 (11)
H180.55660.65440.65320.064*
C190.5744 (4)0.6950 (4)0.4837 (3)0.0443 (9)
H190.47300.63300.43330.053*
C200.7954 (4)0.7211 (3)0.0442 (3)0.0299 (7)
C210.7525 (4)0.5955 (3)−0.0406 (3)0.0367 (8)
H210.65110.5262−0.06720.044*
C220.8556 (5)0.5702 (4)−0.0870 (3)0.0459 (9)
H220.82470.4838−0.14410.055*
C231.0022 (5)0.6704 (4)−0.0500 (3)0.0488 (10)
H231.07300.6536−0.08140.059*
C241.0459 (4)0.7955 (4)0.0331 (3)0.0488 (10)
H241.14700.86510.05870.059*
C250.9436 (4)0.8202 (4)0.0791 (3)0.0412 (9)
H250.97540.90710.13600.049*
U11U22U33U12U13U23
Cl10.0784 (7)0.0327 (4)0.0474 (5)0.0239 (5)0.0270 (5)0.0073 (4)
C10.053 (2)0.053 (2)0.0308 (16)0.0303 (18)0.0270 (16)0.0130 (15)
C20.069 (3)0.083 (3)0.039 (2)0.054 (3)0.035 (2)0.023 (2)
C30.047 (2)0.119 (4)0.042 (2)0.047 (3)0.0269 (19)0.024 (2)
C40.0341 (19)0.082 (3)0.0307 (18)0.0177 (19)0.0204 (15)0.0145 (18)
C50.0325 (18)0.052 (2)0.0270 (16)0.0060 (16)0.0147 (15)0.0051 (15)
C60.0312 (16)0.0384 (17)0.0195 (14)0.0126 (14)0.0158 (13)0.0069 (12)
N10.0342 (14)0.0246 (12)0.0213 (12)0.0102 (11)0.0147 (11)0.0053 (10)
C70.0316 (17)0.0235 (14)0.0290 (15)0.0065 (13)0.0140 (13)0.0037 (12)
C80.0398 (18)0.0295 (15)0.0222 (14)0.0105 (14)0.0145 (14)0.0025 (12)
C90.062 (2)0.0353 (17)0.0218 (15)0.0190 (17)0.0173 (16)0.0092 (13)
C100.060 (2)0.0386 (18)0.0266 (16)0.0283 (17)0.0165 (16)0.0123 (14)
C110.055 (2)0.0365 (17)0.0253 (15)0.0243 (16)0.0160 (15)0.0082 (13)
C120.0338 (17)0.0297 (15)0.0243 (15)0.0112 (13)0.0136 (13)0.0049 (12)
C130.070 (3)0.058 (2)0.042 (2)0.038 (2)0.026 (2)0.0164 (18)
C140.0306 (16)0.0254 (14)0.0227 (14)0.0107 (13)0.0124 (13)0.0040 (12)
C150.0389 (19)0.0342 (17)0.0284 (16)0.0018 (15)0.0147 (15)0.0005 (14)
C160.042 (2)0.046 (2)0.0263 (16)0.0095 (17)0.0070 (16)−0.0050 (15)
C170.062 (2)0.0429 (19)0.0227 (15)0.0210 (18)0.0136 (17)0.0072 (14)
C180.059 (2)0.060 (2)0.038 (2)0.009 (2)0.0293 (19)0.0197 (18)
C190.0365 (19)0.050 (2)0.0355 (18)0.0038 (17)0.0154 (16)0.0078 (16)
C200.0413 (18)0.0320 (16)0.0189 (13)0.0133 (14)0.0157 (13)0.0065 (12)
C210.045 (2)0.0311 (16)0.0293 (16)0.0087 (15)0.0151 (15)0.0039 (13)
C220.072 (3)0.046 (2)0.0320 (18)0.031 (2)0.0261 (19)0.0075 (16)
C230.059 (2)0.076 (3)0.0330 (18)0.037 (2)0.0304 (18)0.0223 (19)
C240.045 (2)0.065 (2)0.0323 (18)0.0119 (19)0.0200 (17)0.0140 (18)
C250.047 (2)0.0412 (19)0.0279 (16)0.0066 (17)0.0176 (16)0.0005 (14)
Cl1—C11.746 (4)C11—H111.0000
C1—C21.376 (5)C12—C141.518 (4)
C1—C61.402 (5)C12—H121.0000
C2—C31.376 (6)C13—H13A0.9800
C2—H20.9500C13—H13B0.9800
C3—C41.393 (6)C13—H13C0.9800
C3—H30.9500C14—C151.372 (4)
C4—C51.413 (5)C14—C191.381 (4)
C4—H40.9500C15—C161.384 (4)
C5—C61.379 (4)C15—H150.9500
C5—H50.9500C16—C171.379 (5)
C6—C71.504 (4)C16—H160.9500
N1—C121.487 (4)C17—C181.355 (5)
N1—C71.488 (4)C17—H170.9500
N1—C81.496 (4)C18—C191.402 (5)
C7—H7A0.9900C18—H180.9500
C7—H7B0.9900C19—H190.9500
C8—C201.511 (4)C20—C251.384 (4)
C8—C91.523 (4)C20—C211.395 (4)
C8—H81.0000C21—C221.391 (5)
C9—C101.523 (5)C21—H210.9500
C9—H9A0.9900C22—C231.374 (5)
C9—H9B0.9900C22—H220.9500
C10—C111.520 (4)C23—C241.380 (5)
C10—H10A0.9900C23—H230.9500
C10—H10B0.9900C24—C251.378 (5)
C11—C121.536 (4)C24—H240.9500
C11—C131.549 (5)C25—H250.9500
C2—C1—C6122.7 (4)C13—C11—H11108.3
C2—C1—Cl1117.7 (3)N1—C12—C14109.9 (2)
C6—C1—Cl1119.6 (3)N1—C12—C11112.0 (2)
C1—C2—C3118.6 (4)C14—C12—C11109.8 (2)
C1—C2—H2120.7N1—C12—H12108.3
C3—C2—H2120.7C14—C12—H12108.3
C2—C3—C4122.0 (4)C11—C12—H12108.3
C2—C3—H3119.0C11—C13—H13A109.5
C4—C3—H3119.0C11—C13—H13B109.5
C3—C4—C5117.4 (4)H13A—C13—H13B109.5
C3—C4—H4121.3C11—C13—H13C109.5
C5—C4—H4121.3H13A—C13—H13C109.5
C6—C5—C4122.2 (4)H13B—C13—H13C109.5
C6—C5—H5118.9C15—C14—C19118.2 (3)
C4—C5—H5118.9C15—C14—C12120.4 (3)
C5—C6—C1117.1 (3)C19—C14—C12121.4 (3)
C5—C6—C7123.5 (3)C14—C15—C16121.3 (3)
C1—C6—C7119.4 (3)C14—C15—H15119.3
C12—N1—C7108.8 (2)C16—C15—H15119.3
C12—N1—C8112.7 (2)C17—C16—C15120.2 (3)
C7—N1—C8108.9 (2)C17—C16—H16119.9
N1—C7—C6115.3 (2)C15—C16—H16119.9
N1—C7—H7A108.4C18—C17—C16119.3 (3)
C6—C7—H7A108.4C18—C17—H17120.4
N1—C7—H7B108.4C16—C17—H17120.4
C6—C7—H7B108.4C17—C18—C19120.7 (3)
H7A—C7—H7B107.5C17—C18—H18119.6
N1—C8—C20110.2 (3)C19—C18—H18119.6
N1—C8—C9111.0 (2)C14—C19—C18120.2 (3)
C20—C8—C9111.2 (3)C14—C19—H19119.9
N1—C8—H8108.1C18—C19—H19119.9
C20—C8—H8108.1C25—C20—C21117.6 (3)
C9—C8—H8108.1C25—C20—C8122.3 (3)
C8—C9—C10110.8 (3)C21—C20—C8120.1 (3)
C8—C9—H9A109.5C22—C21—C20121.1 (3)
C10—C9—H9A109.5C22—C21—H21119.4
C8—C9—H9B109.5C20—C21—H21119.4
C10—C9—H9B109.5C23—C22—C21119.9 (3)
H9A—C9—H9B108.1C23—C22—H22120.1
C11—C10—C9110.0 (3)C21—C22—H22120.1
C11—C10—H10A109.7C22—C23—C24119.6 (4)
C9—C10—H10A109.7C22—C23—H23120.2
C11—C10—H10B109.7C24—C23—H23120.2
C9—C10—H10B109.7C25—C24—C23120.4 (3)
H10A—C10—H10B108.2C25—C24—H24119.8
C10—C11—C12110.2 (2)C23—C24—H24119.8
C10—C11—C13110.3 (3)C24—C25—C20121.4 (3)
C12—C11—C13111.4 (3)C24—C25—H25119.3
C10—C11—H11108.3C20—C25—H25119.3
C12—C11—H11108.3
C6—C1—C2—C3−0.2 (5)C10—C11—C12—N154.7 (4)
Cl1—C1—C2—C3−179.1 (3)C13—C11—C12—N1177.5 (3)
C1—C2—C3—C4−0.6 (5)C10—C11—C12—C14177.1 (3)
C2—C3—C4—C50.5 (5)C13—C11—C12—C14−60.1 (3)
C3—C4—C5—C60.5 (5)N1—C12—C14—C1552.4 (4)
C4—C5—C6—C1−1.2 (4)C11—C12—C14—C15−71.3 (4)
C4—C5—C6—C7175.6 (3)N1—C12—C14—C19−129.9 (3)
C2—C1—C6—C51.0 (4)C11—C12—C14—C19106.5 (4)
Cl1—C1—C6—C5179.9 (2)C19—C14—C15—C16−0.7 (5)
C2—C1—C6—C7−175.9 (3)C12—C14—C15—C16177.1 (3)
Cl1—C1—C6—C73.0 (4)C14—C15—C16—C17−1.3 (6)
C12—N1—C7—C6−131.3 (2)C15—C16—C17—C182.0 (6)
C8—N1—C7—C6105.4 (3)C16—C17—C18—C19−0.8 (6)
C5—C6—C7—N111.4 (4)C15—C14—C19—C181.9 (5)
C1—C6—C7—N1−171.9 (3)C12—C14—C19—C18−175.9 (3)
C12—N1—C8—C20177.9 (2)C17—C18—C19—C14−1.2 (6)
C7—N1—C8—C20−61.2 (3)N1—C8—C20—C25−69.8 (4)
C12—N1—C8—C954.3 (3)C9—C8—C20—C2553.7 (4)
C7—N1—C8—C9175.2 (3)N1—C8—C20—C21110.8 (3)
N1—C8—C9—C10−56.3 (3)C9—C8—C20—C21−125.7 (3)
C20—C8—C9—C10−179.4 (2)C25—C20—C21—C220.9 (5)
C8—C9—C10—C1158.1 (3)C8—C20—C21—C22−179.6 (3)
C9—C10—C11—C12−56.7 (4)C20—C21—C22—C23−0.6 (5)
C9—C10—C11—C13179.9 (3)C21—C22—C23—C240.1 (5)
C7—N1—C12—C1462.9 (3)C22—C23—C24—C250.1 (5)
C8—N1—C12—C14−176.1 (2)C23—C24—C25—C200.2 (5)
C7—N1—C12—C11−174.7 (2)C21—C20—C25—C24−0.8 (5)
C8—N1—C12—C11−53.7 (3)C8—C20—C25—C24179.8 (3)
D—H···AD—HH···AD···AD—H···A
C17—H17···Cg1i0.952.833.692 (4)151
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C20–C25 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C17—H17⋯Cg1i 0.952.833.692 (4)151

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, spectral, crystal structure and in vitro antimicrobial evaluation of imidazole/benzotriazole substituted piperidin-4-one derivatives.

Authors:  R Ramachandran; M Rani; S Senthan; Yeon Tae Jeong; S Kabilan
Journal:  Eur J Med Chem       Date:  2011-02-23       Impact factor: 6.514

3.  Synthesis and study of antibacterial and antifungal activities of novel 1-[2-(benzoxazol-2-yl)ethoxy]- 2,6-diarylpiperidin-4-ones.

Authors:  C Ramalingan; S Balasubramanian; S Kabilan; M Vasudevan
Journal:  Eur J Med Chem       Date:  2004-06       Impact factor: 6.514

4.  1-(2-Chloro-benz-yl)-3,5-dimethyl-2,6-diphenyl-piperidine.

Authors:  Chennan Ramalingan; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30
  4 in total
  1 in total

1.  1-(2-Chloro-benz-yl)-3,5-dimethyl-2,6-diphenyl-piperidine.

Authors:  Chennan Ramalingan; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30
  1 in total

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