Literature DB >> 22798910

2-[(1H-Benzimidazol-2-yl)sulfan-yl]-1-phenyl-ethanone.

Hatem A Abdel-Aziz, Tze Shyang Chia, Hoong-Kun Fun.   

Abstract

The title compound, C(15)H(12)N(2)OS, adopts a twisted V-shape, with the S atom as the pivot. The benzimidazole ring system [maximum deviation = 0.015 (1) Å] makes a dihedral angle of 78.56 (7)° with the phenyl ring. The O atom of the ketone group is close to coplanar with its adjacent ring [O-C-C-C torsion angle = 11.0 (2)°]. In the crystal, mol-ecules are linked by N-H⋯N hydrogen bonds into an infinite chain along [001]. The crystal packing also features a C-H⋯π inter-action.

Entities:  

Year:  2012        PMID: 22798910      PMCID: PMC3394045          DOI: 10.1107/S1600536812028747

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure. see: Abdel-Aziz et al. (2011 ▶). For the synthesis, see: D’Amico et al. (1964 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For standard bond lengths, see: Allen et al. (1987) ▶.

Experimental

Crystal data

C15H12N2OS M = 268.33 Monoclinic, a = 14.7849 (13) Å b = 9.2643 (8) Å c = 9.7859 (8) Å β = 106.792 (1)° V = 1283.24 (19) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 100 K 0.32 × 0.11 × 0.07 mm

Data collection

Bruker APEX DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.927, T max = 0.983 13644 measured reflections 3722 independent reflections 3094 reflections with I > 2σ(I)’ R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.096 S = 1.05 3722 reflections 176 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.51 e Å−3 Δρmin = −0.41 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028747/hb6869sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028747/hb6869Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812028747/hb6869Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H12N2OSF(000) = 560
Mr = 268.33Dx = 1.389 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5435 reflections
a = 14.7849 (13) Åθ = 2.6–30.0°
b = 9.2643 (8) ŵ = 0.24 mm1
c = 9.7859 (8) ÅT = 100 K
β = 106.792 (1)°Needle, colourless
V = 1283.24 (19) Å30.32 × 0.11 × 0.07 mm
Z = 4
Bruker APEX DUO CCD diffractometer3722 independent reflections
Radiation source: fine-focus sealed tube3094 reflections with I > 2σ(I)'
Graphite monochromatorRint = 0.027
φ and ω scansθmax = 30.0°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −20→20
Tmin = 0.927, Tmax = 0.983k = −10→13
13644 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0361P)2 + 0.7649P] where P = (Fo2 + 2Fc2)/3
3722 reflections(Δ/σ)max = 0.001
176 parametersΔρmax = 0.51 e Å3
0 restraintsΔρmin = −0.41 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.27768 (2)0.54949 (4)0.10069 (4)0.02057 (9)
O10.12453 (8)0.75548 (13)0.11153 (13)0.0336 (3)
N10.33134 (8)0.80747 (12)0.01048 (12)0.0170 (2)
N20.34377 (8)0.79475 (12)0.24453 (12)0.0159 (2)
C10.36703 (9)0.93757 (14)0.07565 (14)0.0155 (2)
C20.39488 (9)1.06192 (15)0.01768 (15)0.0195 (3)
H2A0.38921.0686−0.07930.023*
C30.43124 (10)1.17483 (15)0.10989 (15)0.0209 (3)
H3A0.45041.25870.07390.025*
C40.43994 (9)1.16595 (15)0.25666 (15)0.0198 (3)
H4A0.46491.24390.31540.024*
C50.41217 (9)1.04368 (14)0.31575 (14)0.0179 (3)
H5A0.41751.03780.41260.021*
C60.37587 (8)0.93011 (13)0.22273 (14)0.0149 (2)
C70.31869 (9)0.72789 (14)0.11564 (14)0.0163 (2)
C80.16524 (10)0.57212 (15)−0.03317 (16)0.0224 (3)
H8A0.17670.6038−0.12120.027*
H8B0.13400.4790−0.05130.027*
C90.09888 (10)0.67930 (16)0.00635 (16)0.0229 (3)
C100.00060 (10)0.69134 (16)−0.09324 (16)0.0224 (3)
C11−0.05419 (11)0.80839 (17)−0.07551 (18)0.0277 (3)
H11A−0.02920.8754−0.00380.033*
C12−0.14568 (12)0.82596 (19)−0.1637 (2)0.0335 (4)
H12A−0.18140.9051−0.15200.040*
C13−0.18359 (11)0.7248 (2)−0.26939 (19)0.0340 (4)
H13A−0.24480.7364−0.32900.041*
C14−0.13037 (11)0.6066 (2)−0.28627 (18)0.0327 (4)
H14A−0.15650.5380−0.35590.039*
C15−0.03793 (11)0.58989 (18)−0.19947 (17)0.0271 (3)
H15A−0.00200.5114−0.21230.033*
H1N20.3370 (13)0.761 (2)0.325 (2)0.030 (5)*
U11U22U33U12U13U23
S10.02627 (17)0.01719 (15)0.01866 (18)−0.00276 (12)0.00714 (13)−0.00024 (13)
O10.0277 (5)0.0396 (6)0.0327 (7)−0.0016 (5)0.0075 (5)−0.0181 (5)
N10.0216 (5)0.0182 (5)0.0112 (5)−0.0013 (4)0.0048 (4)−0.0010 (4)
N20.0204 (5)0.0178 (5)0.0098 (5)−0.0002 (4)0.0050 (4)0.0009 (4)
C10.0172 (5)0.0176 (6)0.0114 (6)0.0005 (4)0.0036 (4)−0.0004 (5)
C20.0236 (6)0.0214 (6)0.0132 (6)−0.0005 (5)0.0048 (5)0.0026 (5)
C30.0249 (6)0.0177 (6)0.0199 (7)−0.0014 (5)0.0062 (5)0.0023 (5)
C40.0213 (6)0.0187 (6)0.0185 (7)−0.0007 (5)0.0044 (5)−0.0042 (5)
C50.0205 (6)0.0209 (6)0.0116 (6)0.0007 (5)0.0037 (5)−0.0018 (5)
C60.0154 (5)0.0165 (5)0.0126 (6)0.0012 (4)0.0038 (4)0.0011 (5)
C70.0182 (6)0.0180 (6)0.0128 (6)0.0003 (5)0.0046 (5)−0.0003 (5)
C80.0242 (6)0.0234 (6)0.0202 (7)−0.0050 (5)0.0072 (5)−0.0067 (6)
C90.0242 (6)0.0237 (6)0.0222 (7)−0.0046 (5)0.0093 (6)−0.0047 (6)
C100.0237 (6)0.0253 (7)0.0200 (7)−0.0053 (5)0.0091 (5)0.0006 (6)
C110.0300 (7)0.0249 (7)0.0291 (8)−0.0027 (6)0.0101 (6)0.0002 (6)
C120.0302 (8)0.0341 (8)0.0376 (10)0.0035 (7)0.0120 (7)0.0092 (7)
C130.0247 (7)0.0469 (10)0.0290 (9)−0.0046 (7)0.0056 (6)0.0120 (8)
C140.0301 (7)0.0440 (9)0.0229 (8)−0.0120 (7)0.0056 (6)−0.0025 (7)
C150.0271 (7)0.0316 (8)0.0233 (8)−0.0059 (6)0.0084 (6)−0.0044 (6)
S1—C71.7519 (13)C5—H5A0.9300
S1—C81.8070 (15)C8—C91.5222 (19)
O1—C91.2148 (18)C8—H8A0.9700
N1—C71.3224 (17)C8—H8B0.9700
N1—C11.3941 (16)C9—C101.502 (2)
N2—C71.3571 (17)C10—C111.394 (2)
N2—C61.3790 (16)C10—C151.395 (2)
N2—H1N20.880 (19)C11—C121.388 (2)
C1—C21.3977 (18)C11—H11A0.9300
C1—C61.4088 (18)C12—C131.388 (3)
C2—C31.3846 (19)C12—H12A0.9300
C2—H2A0.9300C13—C141.386 (3)
C3—C41.407 (2)C13—H13A0.9300
C3—H3A0.9300C14—C151.394 (2)
C4—C51.3869 (19)C14—H14A0.9300
C4—H4A0.9300C15—H15A0.9300
C5—C61.3934 (18)
C7—S1—C8100.07 (6)C9—C8—H8A108.6
C7—N1—C1104.24 (11)S1—C8—H8A108.6
C7—N2—C6106.56 (11)C9—C8—H8B108.6
C7—N2—H1N2126.9 (12)S1—C8—H8B108.6
C6—N2—H1N2126.3 (12)H8A—C8—H8B107.6
N1—C1—C2130.08 (12)O1—C9—C10120.88 (13)
N1—C1—C6109.64 (11)O1—C9—C8121.87 (13)
C2—C1—C6120.26 (12)C10—C9—C8117.22 (12)
C3—C2—C1117.56 (12)C11—C10—C15119.34 (14)
C3—C2—H2A121.2C11—C10—C9117.71 (13)
C1—C2—H2A121.2C15—C10—C9122.94 (13)
C2—C3—C4121.66 (12)C12—C11—C10120.72 (15)
C2—C3—H3A119.2C12—C11—H11A119.6
C4—C3—H3A119.2C10—C11—H11A119.6
C5—C4—C3121.51 (13)C11—C12—C13119.69 (16)
C5—C4—H4A119.2C11—C12—H12A120.2
C3—C4—H4A119.2C13—C12—H12A120.2
C4—C5—C6116.68 (12)C14—C13—C12120.09 (15)
C4—C5—H5A121.7C14—C13—H13A120.0
C6—C5—H5A121.7C12—C13—H13A120.0
N2—C6—C5132.10 (12)C13—C14—C15120.36 (16)
N2—C6—C1105.56 (11)C13—C14—H14A119.8
C5—C6—C1122.34 (12)C15—C14—H14A119.8
N1—C7—N2114.00 (12)C14—C15—C10119.79 (15)
N1—C7—S1125.75 (10)C14—C15—H15A120.1
N2—C7—S1120.22 (10)C10—C15—H15A120.1
C9—C8—S1114.65 (10)
C7—N1—C1—C2179.02 (13)C6—N2—C7—S1177.86 (9)
C7—N1—C1—C60.78 (14)C8—S1—C7—N1−57.99 (13)
N1—C1—C2—C3−177.79 (13)C8—S1—C7—N2124.34 (11)
C6—C1—C2—C30.30 (19)C7—S1—C8—C9−57.82 (11)
C1—C2—C3—C4−0.1 (2)S1—C8—C9—O18.48 (19)
C2—C3—C4—C5−0.2 (2)S1—C8—C9—C10−173.67 (10)
C3—C4—C5—C60.38 (19)O1—C9—C10—C1111.0 (2)
C7—N2—C6—C5−178.49 (13)C8—C9—C10—C11−166.86 (13)
C7—N2—C6—C10.55 (13)O1—C9—C10—C15−167.78 (15)
C4—C5—C6—N2178.68 (13)C8—C9—C10—C1514.4 (2)
C4—C5—C6—C1−0.22 (19)C15—C10—C11—C12−1.0 (2)
N1—C1—C6—N2−0.83 (14)C9—C10—C11—C12−179.88 (14)
C2—C1—C6—N2−179.28 (11)C10—C11—C12—C130.9 (2)
N1—C1—C6—C5178.32 (11)C11—C12—C13—C140.3 (2)
C2—C1—C6—C5−0.12 (19)C12—C13—C14—C15−1.4 (2)
C1—N1—C7—N2−0.44 (15)C13—C14—C15—C101.2 (2)
C1—N1—C7—S1−178.24 (10)C11—C10—C15—C140.0 (2)
C6—N2—C7—N1−0.07 (15)C9—C10—C15—C14178.74 (14)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···N1i0.880 (19)1.95 (2)2.8250 (16)175.8 (18)
C4—H4A···Cg1ii0.932.823.4175 (15)123
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the N1/N2/C1/C6/C7 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H1N2⋯N1i 0.880 (19)1.95 (2)2.8250 (16)175.8 (18)
C4—H4ACg1ii 0.932.823.4175 (15)123

Symmetry codes: (i) ; (ii) .

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