| Literature DB >> 22798910 |
Hatem A Abdel-Aziz, Tze Shyang Chia, Hoong-Kun Fun.
Abstract
The title compound, C(15)H(12)N(2)OS, adopts a twisted V-shape, with the S atom as the pivot. The benzimidazole ring system [maximum deviation = 0.015 (1) Å] makes a dihedral angle of 78.56 (7)° with the phenyl ring. The O atom of the ketone group is close to coplanar with its adjacent ring [O-C-C-C torsion angle = 11.0 (2)°]. In the crystal, mol-ecules are linked by N-H⋯N hydrogen bonds into an infinite chain along [001]. The crystal packing also features a C-H⋯π inter-action.Entities:
Year: 2012 PMID: 22798910 PMCID: PMC3394045 DOI: 10.1107/S1600536812028747
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H12N2OS | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5435 reflections |
| θ = 2.6–30.0° | |
| µ = 0.24 mm−1 | |
| β = 106.792 (1)° | Needle, colourless |
| 0.32 × 0.11 × 0.07 mm | |
| Bruker APEX DUO CCD diffractometer | 3722 independent reflections |
| Radiation source: fine-focus sealed tube | 3094 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 30.0°, θmin = 1.4° |
| Absorption correction: multi-scan ( | |
| 13644 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3722 reflections | (Δ/σ)max = 0.001 |
| 176 parameters | Δρmax = 0.51 e Å−3 |
| 0 restraints | Δρmin = −0.41 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.27768 (2) | 0.54949 (4) | 0.10069 (4) | 0.02057 (9) | |
| O1 | 0.12453 (8) | 0.75548 (13) | 0.11153 (13) | 0.0336 (3) | |
| N1 | 0.33134 (8) | 0.80747 (12) | 0.01048 (12) | 0.0170 (2) | |
| N2 | 0.34377 (8) | 0.79475 (12) | 0.24453 (12) | 0.0159 (2) | |
| C1 | 0.36703 (9) | 0.93757 (14) | 0.07565 (14) | 0.0155 (2) | |
| C2 | 0.39488 (9) | 1.06192 (15) | 0.01768 (15) | 0.0195 (3) | |
| H2A | 0.3892 | 1.0686 | −0.0793 | 0.023* | |
| C3 | 0.43124 (10) | 1.17483 (15) | 0.10989 (15) | 0.0209 (3) | |
| H3A | 0.4504 | 1.2587 | 0.0739 | 0.025* | |
| C4 | 0.43994 (9) | 1.16595 (15) | 0.25666 (15) | 0.0198 (3) | |
| H4A | 0.4649 | 1.2439 | 0.3154 | 0.024* | |
| C5 | 0.41217 (9) | 1.04368 (14) | 0.31575 (14) | 0.0179 (3) | |
| H5A | 0.4175 | 1.0378 | 0.4126 | 0.021* | |
| C6 | 0.37587 (8) | 0.93011 (13) | 0.22273 (14) | 0.0149 (2) | |
| C7 | 0.31869 (9) | 0.72789 (14) | 0.11564 (14) | 0.0163 (2) | |
| C8 | 0.16524 (10) | 0.57212 (15) | −0.03317 (16) | 0.0224 (3) | |
| H8A | 0.1767 | 0.6038 | −0.1212 | 0.027* | |
| H8B | 0.1340 | 0.4790 | −0.0513 | 0.027* | |
| C9 | 0.09888 (10) | 0.67930 (16) | 0.00635 (16) | 0.0229 (3) | |
| C10 | 0.00060 (10) | 0.69134 (16) | −0.09324 (16) | 0.0224 (3) | |
| C11 | −0.05419 (11) | 0.80839 (17) | −0.07551 (18) | 0.0277 (3) | |
| H11A | −0.0292 | 0.8754 | −0.0038 | 0.033* | |
| C12 | −0.14568 (12) | 0.82596 (19) | −0.1637 (2) | 0.0335 (4) | |
| H12A | −0.1814 | 0.9051 | −0.1520 | 0.040* | |
| C13 | −0.18359 (11) | 0.7248 (2) | −0.26939 (19) | 0.0340 (4) | |
| H13A | −0.2448 | 0.7364 | −0.3290 | 0.041* | |
| C14 | −0.13037 (11) | 0.6066 (2) | −0.28627 (18) | 0.0327 (4) | |
| H14A | −0.1565 | 0.5380 | −0.3559 | 0.039* | |
| C15 | −0.03793 (11) | 0.58989 (18) | −0.19947 (17) | 0.0271 (3) | |
| H15A | −0.0020 | 0.5114 | −0.2123 | 0.033* | |
| H1N2 | 0.3370 (13) | 0.761 (2) | 0.325 (2) | 0.030 (5)* |
| S1 | 0.02627 (17) | 0.01719 (15) | 0.01866 (18) | −0.00276 (12) | 0.00714 (13) | −0.00024 (13) |
| O1 | 0.0277 (5) | 0.0396 (6) | 0.0327 (7) | −0.0016 (5) | 0.0075 (5) | −0.0181 (5) |
| N1 | 0.0216 (5) | 0.0182 (5) | 0.0112 (5) | −0.0013 (4) | 0.0048 (4) | −0.0010 (4) |
| N2 | 0.0204 (5) | 0.0178 (5) | 0.0098 (5) | −0.0002 (4) | 0.0050 (4) | 0.0009 (4) |
| C1 | 0.0172 (5) | 0.0176 (6) | 0.0114 (6) | 0.0005 (4) | 0.0036 (4) | −0.0004 (5) |
| C2 | 0.0236 (6) | 0.0214 (6) | 0.0132 (6) | −0.0005 (5) | 0.0048 (5) | 0.0026 (5) |
| C3 | 0.0249 (6) | 0.0177 (6) | 0.0199 (7) | −0.0014 (5) | 0.0062 (5) | 0.0023 (5) |
| C4 | 0.0213 (6) | 0.0187 (6) | 0.0185 (7) | −0.0007 (5) | 0.0044 (5) | −0.0042 (5) |
| C5 | 0.0205 (6) | 0.0209 (6) | 0.0116 (6) | 0.0007 (5) | 0.0037 (5) | −0.0018 (5) |
| C6 | 0.0154 (5) | 0.0165 (5) | 0.0126 (6) | 0.0012 (4) | 0.0038 (4) | 0.0011 (5) |
| C7 | 0.0182 (6) | 0.0180 (6) | 0.0128 (6) | 0.0003 (5) | 0.0046 (5) | −0.0003 (5) |
| C8 | 0.0242 (6) | 0.0234 (6) | 0.0202 (7) | −0.0050 (5) | 0.0072 (5) | −0.0067 (6) |
| C9 | 0.0242 (6) | 0.0237 (6) | 0.0222 (7) | −0.0046 (5) | 0.0093 (6) | −0.0047 (6) |
| C10 | 0.0237 (6) | 0.0253 (7) | 0.0200 (7) | −0.0053 (5) | 0.0091 (5) | 0.0006 (6) |
| C11 | 0.0300 (7) | 0.0249 (7) | 0.0291 (8) | −0.0027 (6) | 0.0101 (6) | 0.0002 (6) |
| C12 | 0.0302 (8) | 0.0341 (8) | 0.0376 (10) | 0.0035 (7) | 0.0120 (7) | 0.0092 (7) |
| C13 | 0.0247 (7) | 0.0469 (10) | 0.0290 (9) | −0.0046 (7) | 0.0056 (6) | 0.0120 (8) |
| C14 | 0.0301 (7) | 0.0440 (9) | 0.0229 (8) | −0.0120 (7) | 0.0056 (6) | −0.0025 (7) |
| C15 | 0.0271 (7) | 0.0316 (8) | 0.0233 (8) | −0.0059 (6) | 0.0084 (6) | −0.0044 (6) |
| S1—C7 | 1.7519 (13) | C5—H5A | 0.9300 |
| S1—C8 | 1.8070 (15) | C8—C9 | 1.5222 (19) |
| O1—C9 | 1.2148 (18) | C8—H8A | 0.9700 |
| N1—C7 | 1.3224 (17) | C8—H8B | 0.9700 |
| N1—C1 | 1.3941 (16) | C9—C10 | 1.502 (2) |
| N2—C7 | 1.3571 (17) | C10—C11 | 1.394 (2) |
| N2—C6 | 1.3790 (16) | C10—C15 | 1.395 (2) |
| N2—H1N2 | 0.880 (19) | C11—C12 | 1.388 (2) |
| C1—C2 | 1.3977 (18) | C11—H11A | 0.9300 |
| C1—C6 | 1.4088 (18) | C12—C13 | 1.388 (3) |
| C2—C3 | 1.3846 (19) | C12—H12A | 0.9300 |
| C2—H2A | 0.9300 | C13—C14 | 1.386 (3) |
| C3—C4 | 1.407 (2) | C13—H13A | 0.9300 |
| C3—H3A | 0.9300 | C14—C15 | 1.394 (2) |
| C4—C5 | 1.3869 (19) | C14—H14A | 0.9300 |
| C4—H4A | 0.9300 | C15—H15A | 0.9300 |
| C5—C6 | 1.3934 (18) | ||
| C7—S1—C8 | 100.07 (6) | C9—C8—H8A | 108.6 |
| C7—N1—C1 | 104.24 (11) | S1—C8—H8A | 108.6 |
| C7—N2—C6 | 106.56 (11) | C9—C8—H8B | 108.6 |
| C7—N2—H1N2 | 126.9 (12) | S1—C8—H8B | 108.6 |
| C6—N2—H1N2 | 126.3 (12) | H8A—C8—H8B | 107.6 |
| N1—C1—C2 | 130.08 (12) | O1—C9—C10 | 120.88 (13) |
| N1—C1—C6 | 109.64 (11) | O1—C9—C8 | 121.87 (13) |
| C2—C1—C6 | 120.26 (12) | C10—C9—C8 | 117.22 (12) |
| C3—C2—C1 | 117.56 (12) | C11—C10—C15 | 119.34 (14) |
| C3—C2—H2A | 121.2 | C11—C10—C9 | 117.71 (13) |
| C1—C2—H2A | 121.2 | C15—C10—C9 | 122.94 (13) |
| C2—C3—C4 | 121.66 (12) | C12—C11—C10 | 120.72 (15) |
| C2—C3—H3A | 119.2 | C12—C11—H11A | 119.6 |
| C4—C3—H3A | 119.2 | C10—C11—H11A | 119.6 |
| C5—C4—C3 | 121.51 (13) | C11—C12—C13 | 119.69 (16) |
| C5—C4—H4A | 119.2 | C11—C12—H12A | 120.2 |
| C3—C4—H4A | 119.2 | C13—C12—H12A | 120.2 |
| C4—C5—C6 | 116.68 (12) | C14—C13—C12 | 120.09 (15) |
| C4—C5—H5A | 121.7 | C14—C13—H13A | 120.0 |
| C6—C5—H5A | 121.7 | C12—C13—H13A | 120.0 |
| N2—C6—C5 | 132.10 (12) | C13—C14—C15 | 120.36 (16) |
| N2—C6—C1 | 105.56 (11) | C13—C14—H14A | 119.8 |
| C5—C6—C1 | 122.34 (12) | C15—C14—H14A | 119.8 |
| N1—C7—N2 | 114.00 (12) | C14—C15—C10 | 119.79 (15) |
| N1—C7—S1 | 125.75 (10) | C14—C15—H15A | 120.1 |
| N2—C7—S1 | 120.22 (10) | C10—C15—H15A | 120.1 |
| C9—C8—S1 | 114.65 (10) | ||
| C7—N1—C1—C2 | 179.02 (13) | C6—N2—C7—S1 | 177.86 (9) |
| C7—N1—C1—C6 | 0.78 (14) | C8—S1—C7—N1 | −57.99 (13) |
| N1—C1—C2—C3 | −177.79 (13) | C8—S1—C7—N2 | 124.34 (11) |
| C6—C1—C2—C3 | 0.30 (19) | C7—S1—C8—C9 | −57.82 (11) |
| C1—C2—C3—C4 | −0.1 (2) | S1—C8—C9—O1 | 8.48 (19) |
| C2—C3—C4—C5 | −0.2 (2) | S1—C8—C9—C10 | −173.67 (10) |
| C3—C4—C5—C6 | 0.38 (19) | O1—C9—C10—C11 | 11.0 (2) |
| C7—N2—C6—C5 | −178.49 (13) | C8—C9—C10—C11 | −166.86 (13) |
| C7—N2—C6—C1 | 0.55 (13) | O1—C9—C10—C15 | −167.78 (15) |
| C4—C5—C6—N2 | 178.68 (13) | C8—C9—C10—C15 | 14.4 (2) |
| C4—C5—C6—C1 | −0.22 (19) | C15—C10—C11—C12 | −1.0 (2) |
| N1—C1—C6—N2 | −0.83 (14) | C9—C10—C11—C12 | −179.88 (14) |
| C2—C1—C6—N2 | −179.28 (11) | C10—C11—C12—C13 | 0.9 (2) |
| N1—C1—C6—C5 | 178.32 (11) | C11—C12—C13—C14 | 0.3 (2) |
| C2—C1—C6—C5 | −0.12 (19) | C12—C13—C14—C15 | −1.4 (2) |
| C1—N1—C7—N2 | −0.44 (15) | C13—C14—C15—C10 | 1.2 (2) |
| C1—N1—C7—S1 | −178.24 (10) | C11—C10—C15—C14 | 0.0 (2) |
| C6—N2—C7—N1 | −0.07 (15) | C9—C10—C15—C14 | 178.74 (14) |
| H··· | ||||
| N2—H1 | 0.880 (19) | 1.95 (2) | 2.8250 (16) | 175.8 (18) |
| C4—H4 | 0.93 | 2.82 | 3.4175 (15) | 123 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the N1/N2/C1/C6/C7 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H1 | 0.880 (19) | 1.95 (2) | 2.8250 (16) | 175.8 (18) |
| C4—H4 | 0.93 | 2.82 | 3.4175 (15) | 123 |
Symmetry codes: (i) ; (ii) .