| Literature DB >> 22064924 |
Hatem A Abdel-Aziz, Seik Weng Ng, Edward R T Tiekink.
Abstract
The mol-ecule in the structure of the title compound, C(15)H(11)ClN(2)OS, displays two planar residues [r.m.s. deviation = 0.014 Å for the benzimidazole residue, and the ketone group is co-planar with the benzene ring to which it is attached forming a O-C-C-C torsion angle of -173.18 (14) °] linked at the S atom. The overall shape is based on a twisted V, the dihedral angle formed between the two planes being 82.4 (2) °. The amine-H atom is bifurcated, forming N-H⋯O and N-H⋯S hydrogen bonds leading to dimeric aggregates. These are linked into a supra-molecular chain along the c axis via C-H⋯π hydrogen bonds. Chains form layers in the ab plane being connected along the c axis via weak π-π inter-actions [3.9578 (8) Å] formed between centrosymmetrically related chloro-substituted benzene rings.Entities:
Year: 2011 PMID: 22064924 PMCID: PMC3201531 DOI: 10.1107/S160053681103666X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H11ClN2OS | |
| Monoclinic, | Cu |
| Hall symbol: -C 2yc | Cell parameters from 3792 reflections |
| θ = 3.2–74.1° | |
| µ = 4.02 mm−1 | |
| β = 93.087 (1)° | Block, light-brown |
| 0.40 × 0.30 × 0.20 mm | |
| Agilent SuperNova Dual diffractometer with Atlas detector | 2613 independent reflections |
| Radiation source: SuperNova (Cu) X-ray Source | 2489 reflections with |
| mirror | |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 74.2°, θmin = 3.2° |
| ω scan | |
| Absorption correction: multi-scan ( | |
| 5171 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2613 reflections | (Δ/σ)max = 0.001 |
| 185 parameters | Δρmax = 0.30 e Å−3 |
| 0 restraints | Δρmin = −0.40 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.282969 (13) | 0.21419 (4) | 0.22654 (4) | 0.01886 (12) | |
| S1 | 0.059988 (12) | −0.01719 (4) | 0.74205 (3) | 0.01091 (11) | |
| O1 | 0.07341 (4) | 0.18383 (12) | 0.52818 (10) | 0.0138 (2) | |
| N1 | 0.10732 (4) | 0.20841 (14) | 0.86384 (12) | 0.0121 (3) | |
| N2 | 0.03011 (4) | 0.17240 (14) | 0.92176 (12) | 0.0118 (3) | |
| H2 | −0.0005 (8) | 0.142 (2) | 0.9163 (19) | 0.026 (5)* | |
| C1 | 0.09605 (5) | 0.30740 (16) | 0.95916 (13) | 0.0111 (3) | |
| C2 | 0.12521 (5) | 0.41479 (17) | 1.01856 (14) | 0.0147 (3) | |
| H2A | 0.1576 | 0.4315 | 0.9937 | 0.018* | |
| C3 | 0.10522 (6) | 0.49602 (17) | 1.11487 (15) | 0.0156 (3) | |
| H3 | 0.1244 | 0.5692 | 1.1570 | 0.019* | |
| C4 | 0.05726 (6) | 0.47245 (17) | 1.15152 (15) | 0.0159 (3) | |
| H4 | 0.0448 | 0.5299 | 1.2181 | 0.019* | |
| C5 | 0.02753 (5) | 0.36737 (17) | 1.09304 (14) | 0.0141 (3) | |
| H5 | −0.0050 | 0.3517 | 1.1173 | 0.017* | |
| C6 | 0.04807 (5) | 0.28607 (15) | 0.99671 (13) | 0.0109 (3) | |
| C7 | 0.06706 (5) | 0.13180 (16) | 0.84568 (13) | 0.0106 (3) | |
| C8 | 0.11504 (5) | 0.00291 (16) | 0.65706 (14) | 0.0115 (3) | |
| H8A | 0.1421 | 0.0295 | 0.7196 | 0.014* | |
| H8B | 0.1233 | −0.0909 | 0.6184 | 0.014* | |
| C9 | 0.11099 (5) | 0.11594 (15) | 0.55116 (13) | 0.0109 (3) | |
| C10 | 0.15473 (5) | 0.13996 (16) | 0.47401 (13) | 0.0109 (3) | |
| C11 | 0.19656 (5) | 0.05349 (17) | 0.48894 (14) | 0.0142 (3) | |
| H11 | 0.1980 | −0.0211 | 0.5518 | 0.017* | |
| C12 | 0.23593 (5) | 0.07600 (17) | 0.41252 (15) | 0.0153 (3) | |
| H12 | 0.2642 | 0.0168 | 0.4222 | 0.018* | |
| C13 | 0.23353 (5) | 0.18575 (17) | 0.32202 (14) | 0.0133 (3) | |
| C14 | 0.19256 (5) | 0.27407 (16) | 0.30626 (14) | 0.0145 (3) | |
| H14 | 0.1916 | 0.3498 | 0.2445 | 0.017* | |
| C15 | 0.15315 (5) | 0.25001 (17) | 0.38202 (14) | 0.0129 (3) | |
| H15 | 0.1248 | 0.3089 | 0.3713 | 0.015* |
| Cl1 | 0.01085 (18) | 0.0243 (2) | 0.0221 (2) | 0.00010 (14) | 0.00726 (14) | 0.00128 (14) |
| S1 | 0.00850 (18) | 0.01265 (19) | 0.01167 (18) | −0.00049 (12) | 0.00121 (12) | −0.00085 (12) |
| O1 | 0.0078 (5) | 0.0169 (5) | 0.0168 (5) | 0.0032 (4) | 0.0010 (4) | 0.0014 (4) |
| N1 | 0.0084 (6) | 0.0141 (6) | 0.0138 (6) | 0.0000 (5) | 0.0005 (4) | 0.0004 (5) |
| N2 | 0.0071 (6) | 0.0149 (6) | 0.0134 (6) | −0.0017 (5) | 0.0011 (4) | −0.0022 (5) |
| C1 | 0.0088 (6) | 0.0125 (7) | 0.0120 (6) | 0.0005 (5) | −0.0011 (5) | 0.0026 (5) |
| C2 | 0.0099 (6) | 0.0154 (7) | 0.0184 (7) | −0.0025 (6) | −0.0017 (5) | 0.0021 (6) |
| C3 | 0.0151 (7) | 0.0125 (7) | 0.0185 (7) | −0.0023 (6) | −0.0054 (6) | 0.0001 (6) |
| C4 | 0.0176 (7) | 0.0147 (7) | 0.0152 (7) | 0.0019 (6) | −0.0008 (6) | −0.0019 (6) |
| C5 | 0.0113 (7) | 0.0162 (7) | 0.0150 (7) | 0.0004 (6) | 0.0018 (5) | −0.0008 (6) |
| C6 | 0.0096 (6) | 0.0110 (7) | 0.0118 (6) | −0.0004 (5) | −0.0019 (5) | 0.0009 (5) |
| C7 | 0.0084 (6) | 0.0131 (7) | 0.0101 (6) | 0.0009 (5) | −0.0004 (5) | 0.0018 (5) |
| C8 | 0.0080 (6) | 0.0146 (7) | 0.0120 (6) | 0.0016 (5) | 0.0017 (5) | −0.0004 (5) |
| C9 | 0.0097 (7) | 0.0111 (7) | 0.0118 (6) | 0.0001 (5) | −0.0006 (5) | −0.0038 (5) |
| C10 | 0.0076 (6) | 0.0130 (7) | 0.0122 (6) | −0.0005 (5) | −0.0007 (5) | −0.0032 (5) |
| C11 | 0.0112 (7) | 0.0156 (7) | 0.0158 (7) | 0.0026 (6) | 0.0007 (5) | 0.0016 (6) |
| C12 | 0.0090 (7) | 0.0173 (8) | 0.0195 (7) | 0.0037 (6) | 0.0004 (5) | −0.0002 (6) |
| C13 | 0.0081 (6) | 0.0176 (7) | 0.0143 (7) | −0.0025 (6) | 0.0025 (5) | −0.0037 (6) |
| C14 | 0.0123 (7) | 0.0143 (7) | 0.0168 (7) | −0.0006 (6) | 0.0000 (6) | 0.0013 (6) |
| C15 | 0.0086 (6) | 0.0138 (7) | 0.0162 (7) | 0.0018 (6) | −0.0012 (5) | −0.0008 (6) |
| Cl1—C13 | 1.7392 (15) | C5—C6 | 1.394 (2) |
| S1—C7 | 1.7548 (15) | C5—H5 | 0.9500 |
| S1—C8 | 1.7958 (14) | C8—C9 | 1.518 (2) |
| O1—C9 | 1.2187 (17) | C8—H8A | 0.9900 |
| N1—C7 | 1.3165 (19) | C8—H8B | 0.9900 |
| N1—C1 | 1.3955 (19) | C9—C10 | 1.4920 (19) |
| N2—C7 | 1.3685 (18) | C10—C15 | 1.396 (2) |
| N2—C6 | 1.3843 (19) | C10—C11 | 1.400 (2) |
| N2—H2 | 0.88 (2) | C11—C12 | 1.387 (2) |
| C1—C2 | 1.399 (2) | C11—H11 | 0.9500 |
| C1—C6 | 1.404 (2) | C12—C13 | 1.384 (2) |
| C2—C3 | 1.386 (2) | C12—H12 | 0.9500 |
| C2—H2A | 0.9500 | C13—C14 | 1.392 (2) |
| C3—C4 | 1.403 (2) | C14—C15 | 1.386 (2) |
| C3—H3 | 0.9500 | C14—H14 | 0.9500 |
| C4—C5 | 1.388 (2) | C15—H15 | 0.9500 |
| C4—H4 | 0.9500 | ||
| C7—S1—C8 | 98.65 (7) | C9—C8—H8A | 108.9 |
| C7—N1—C1 | 103.95 (12) | S1—C8—H8A | 108.9 |
| C7—N2—C6 | 106.36 (12) | C9—C8—H8B | 108.9 |
| C7—N2—H2 | 127.0 (14) | S1—C8—H8B | 108.9 |
| C6—N2—H2 | 126.0 (14) | H8A—C8—H8B | 107.7 |
| N1—C1—C2 | 129.61 (13) | O1—C9—C10 | 120.76 (13) |
| N1—C1—C6 | 110.45 (12) | O1—C9—C8 | 121.77 (13) |
| C2—C1—C6 | 119.92 (13) | C10—C9—C8 | 117.46 (12) |
| C3—C2—C1 | 117.78 (14) | C15—C10—C11 | 119.33 (13) |
| C3—C2—H2A | 121.1 | C15—C10—C9 | 118.61 (13) |
| C1—C2—H2A | 121.1 | C11—C10—C9 | 122.04 (13) |
| C2—C3—C4 | 121.42 (14) | C12—C11—C10 | 120.44 (14) |
| C2—C3—H3 | 119.3 | C12—C11—H11 | 119.8 |
| C4—C3—H3 | 119.3 | C10—C11—H11 | 119.8 |
| C5—C4—C3 | 121.76 (14) | C11—C12—C13 | 119.20 (14) |
| C5—C4—H4 | 119.1 | C11—C12—H12 | 120.4 |
| C3—C4—H4 | 119.1 | C13—C12—H12 | 120.4 |
| C4—C5—C6 | 116.30 (13) | C12—C13—C14 | 121.44 (14) |
| C4—C5—H5 | 121.8 | C12—C13—Cl1 | 119.16 (11) |
| C6—C5—H5 | 121.8 | C14—C13—Cl1 | 119.40 (12) |
| N2—C6—C5 | 132.02 (14) | C15—C14—C13 | 119.06 (14) |
| N2—C6—C1 | 105.14 (12) | C15—C14—H14 | 120.5 |
| C5—C6—C1 | 122.81 (14) | C13—C14—H14 | 120.5 |
| N1—C7—N2 | 114.09 (13) | C14—C15—C10 | 120.53 (13) |
| N1—C7—S1 | 125.23 (11) | C14—C15—H15 | 119.7 |
| N2—C7—S1 | 120.58 (11) | C10—C15—H15 | 119.7 |
| C9—C8—S1 | 113.32 (10) | ||
| C7—N1—C1—C2 | 178.86 (15) | C8—S1—C7—N1 | −11.63 (14) |
| C7—N1—C1—C6 | 0.28 (15) | C8—S1—C7—N2 | 172.27 (11) |
| N1—C1—C2—C3 | −177.76 (14) | C7—S1—C8—C9 | −79.85 (11) |
| C6—C1—C2—C3 | 0.7 (2) | S1—C8—C9—O1 | −0.39 (18) |
| C1—C2—C3—C4 | −0.4 (2) | S1—C8—C9—C10 | −179.50 (10) |
| C2—C3—C4—C5 | −0.2 (2) | O1—C9—C10—C15 | 5.2 (2) |
| C3—C4—C5—C6 | 0.4 (2) | C8—C9—C10—C15 | −175.68 (13) |
| C7—N2—C6—C5 | −178.12 (15) | O1—C9—C10—C11 | −173.18 (14) |
| C7—N2—C6—C1 | 0.27 (15) | C8—C9—C10—C11 | 5.9 (2) |
| C4—C5—C6—N2 | 178.08 (15) | C15—C10—C11—C12 | −0.5 (2) |
| C4—C5—C6—C1 | −0.1 (2) | C9—C10—C11—C12 | 177.87 (13) |
| N1—C1—C6—N2 | −0.35 (16) | C10—C11—C12—C13 | 0.5 (2) |
| C2—C1—C6—N2 | −179.09 (13) | C11—C12—C13—C14 | 0.1 (2) |
| N1—C1—C6—C5 | 178.23 (13) | C11—C12—C13—Cl1 | 179.83 (12) |
| C2—C1—C6—C5 | −0.5 (2) | C12—C13—C14—C15 | −0.8 (2) |
| C1—N1—C7—N2 | −0.10 (16) | Cl1—C13—C14—C15 | 179.50 (11) |
| C1—N1—C7—S1 | −176.42 (10) | C13—C14—C15—C10 | 0.8 (2) |
| C6—N2—C7—N1 | −0.12 (17) | C11—C10—C15—C14 | −0.2 (2) |
| C6—N2—C7—S1 | 176.39 (10) | C9—C10—C15—C14 | −178.60 (13) |
| Cg1 and Cg2 are the centroids of the C10–C15 and N1,N2,C1,C6,C7 rings, respectively. |
| H··· | ||||
| N2—H2···O1i | 0.88 (2) | 2.14 (2) | 2.9104 (16) | 144.9 (19) |
| N2—H2···S1i | 0.88 (2) | 2.69 (2) | 3.4073 (12) | 139.1 (16) |
| C8—H8a···Cg1ii | 0.99 | 2.89 | 3.5678 (15) | 126 |
| C8—H8b···Cg2iii | 0.99 | 2.76 | 3.4204 (16) | 125 |
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of the C10–C15 and N1,N2,C1,C6,C7 rings, respectively.
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯O1i | 0.88 (2) | 2.14 (2) | 2.9104 (16) | 144.9 (19) |
| N2—H2⋯S1i | 0.88 (2) | 2.69 (2) | 3.4073 (12) | 139.1 (16) |
| C8—H8a⋯ | 0.99 | 2.89 | 3.5678 (15) | 126 |
| C8—H8b⋯ | 0.99 | 2.76 | 3.4204 (16) | 125 |
Symmetry codes: (i) ; (ii) ; (iii) .