Literature DB >> 22064924

2-(1H-1,3-Benzodiazol-2-ylsulfan-yl)-1-(4-chloro-phen-yl)ethanone.

Hatem A Abdel-Aziz, Seik Weng Ng, Edward R T Tiekink.   

Abstract

The mol-ecule in the structure of the title compound, C(15)H(11)ClN(2)OS, displays two planar residues [r.m.s. deviation = 0.014 Å for the benzimidazole residue, and the ketone group is co-planar with the benzene ring to which it is attached forming a O-C-C-C torsion angle of -173.18 (14) °] linked at the S atom. The overall shape is based on a twisted V, the dihedral angle formed between the two planes being 82.4 (2) °. The amine-H atom is bifurcated, forming N-H⋯O and N-H⋯S hydrogen bonds leading to dimeric aggregates. These are linked into a supra-molecular chain along the c axis via C-H⋯π hydrogen bonds. Chains form layers in the ab plane being connected along the c axis via weak π-π inter-actions [3.9578 (8) Å] formed between centrosymmetrically related chloro-substituted benzene rings.

Entities:  

Year:  2011        PMID: 22064924      PMCID: PMC3201531          DOI: 10.1107/S160053681103666X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and pharmacological properties of benzim­idazoles, see: Al-Rashood & Abdel-Aziz (2010 ▶); Abdel-Aziz et al. (2010 ▶). For the synthesis, see: Sarhan et al. (1996 ▶). For a related structure, see: Lynch & McClenaghan (2004 ▶).

Experimental

Crystal data

C15H11ClN2OS M = 302.77 Monoclinic, a = 27.3765 (4) Å b = 9.2784 (2) Å c = 10.3630 (2) Å β = 93.087 (1)° V = 2628.49 (9) Å3 Z = 8 Cu Kα radiation μ = 4.02 mm−1 T = 100 K 0.40 × 0.30 × 0.20 mm

Data collection

Agilent SuperNova Dual diffractometer with Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.710, T max = 1.000 5171 measured reflections 2613 independent reflections 2489 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.079 S = 1.07 2613 reflections 185 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.40 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681103666X/ez2258sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681103666X/ez2258Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681103666X/ez2258Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H11ClN2OSF(000) = 1248
Mr = 302.77Dx = 1.530 Mg m3
Monoclinic, C2/cCu Kα radiation, λ = 1.5418 Å
Hall symbol: -C 2ycCell parameters from 3792 reflections
a = 27.3765 (4) Åθ = 3.2–74.1°
b = 9.2784 (2) ŵ = 4.02 mm1
c = 10.3630 (2) ÅT = 100 K
β = 93.087 (1)°Block, light-brown
V = 2628.49 (9) Å30.40 × 0.30 × 0.20 mm
Z = 8
Agilent SuperNova Dual diffractometer with Atlas detector2613 independent reflections
Radiation source: SuperNova (Cu) X-ray Source2489 reflections with I > 2σ(I)
mirrorRint = 0.016
Detector resolution: 10.4041 pixels mm-1θmax = 74.2°, θmin = 3.2°
ω scanh = −32→34
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −11→10
Tmin = 0.710, Tmax = 1.000l = −9→12
5171 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0442P)2 + 2.8814P] where P = (Fo2 + 2Fc2)/3
2613 reflections(Δ/σ)max = 0.001
185 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.40 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.282969 (13)0.21419 (4)0.22654 (4)0.01886 (12)
S10.059988 (12)−0.01719 (4)0.74205 (3)0.01091 (11)
O10.07341 (4)0.18383 (12)0.52818 (10)0.0138 (2)
N10.10732 (4)0.20841 (14)0.86384 (12)0.0121 (3)
N20.03011 (4)0.17240 (14)0.92176 (12)0.0118 (3)
H2−0.0005 (8)0.142 (2)0.9163 (19)0.026 (5)*
C10.09605 (5)0.30740 (16)0.95916 (13)0.0111 (3)
C20.12521 (5)0.41479 (17)1.01856 (14)0.0147 (3)
H2A0.15760.43150.99370.018*
C30.10522 (6)0.49602 (17)1.11487 (15)0.0156 (3)
H30.12440.56921.15700.019*
C40.05726 (6)0.47245 (17)1.15152 (15)0.0159 (3)
H40.04480.52991.21810.019*
C50.02753 (5)0.36737 (17)1.09304 (14)0.0141 (3)
H5−0.00500.35171.11730.017*
C60.04807 (5)0.28607 (15)0.99671 (13)0.0109 (3)
C70.06706 (5)0.13180 (16)0.84568 (13)0.0106 (3)
C80.11504 (5)0.00291 (16)0.65706 (14)0.0115 (3)
H8A0.14210.02950.71960.014*
H8B0.1233−0.09090.61840.014*
C90.11099 (5)0.11594 (15)0.55116 (13)0.0109 (3)
C100.15473 (5)0.13996 (16)0.47401 (13)0.0109 (3)
C110.19656 (5)0.05349 (17)0.48894 (14)0.0142 (3)
H110.1980−0.02110.55180.017*
C120.23593 (5)0.07600 (17)0.41252 (15)0.0153 (3)
H120.26420.01680.42220.018*
C130.23353 (5)0.18575 (17)0.32202 (14)0.0133 (3)
C140.19256 (5)0.27407 (16)0.30626 (14)0.0145 (3)
H140.19160.34980.24450.017*
C150.15315 (5)0.25001 (17)0.38202 (14)0.0129 (3)
H150.12480.30890.37130.015*
U11U22U33U12U13U23
Cl10.01085 (18)0.0243 (2)0.0221 (2)0.00010 (14)0.00726 (14)0.00128 (14)
S10.00850 (18)0.01265 (19)0.01167 (18)−0.00049 (12)0.00121 (12)−0.00085 (12)
O10.0078 (5)0.0169 (5)0.0168 (5)0.0032 (4)0.0010 (4)0.0014 (4)
N10.0084 (6)0.0141 (6)0.0138 (6)0.0000 (5)0.0005 (4)0.0004 (5)
N20.0071 (6)0.0149 (6)0.0134 (6)−0.0017 (5)0.0011 (4)−0.0022 (5)
C10.0088 (6)0.0125 (7)0.0120 (6)0.0005 (5)−0.0011 (5)0.0026 (5)
C20.0099 (6)0.0154 (7)0.0184 (7)−0.0025 (6)−0.0017 (5)0.0021 (6)
C30.0151 (7)0.0125 (7)0.0185 (7)−0.0023 (6)−0.0054 (6)0.0001 (6)
C40.0176 (7)0.0147 (7)0.0152 (7)0.0019 (6)−0.0008 (6)−0.0019 (6)
C50.0113 (7)0.0162 (7)0.0150 (7)0.0004 (6)0.0018 (5)−0.0008 (6)
C60.0096 (6)0.0110 (7)0.0118 (6)−0.0004 (5)−0.0019 (5)0.0009 (5)
C70.0084 (6)0.0131 (7)0.0101 (6)0.0009 (5)−0.0004 (5)0.0018 (5)
C80.0080 (6)0.0146 (7)0.0120 (6)0.0016 (5)0.0017 (5)−0.0004 (5)
C90.0097 (7)0.0111 (7)0.0118 (6)0.0001 (5)−0.0006 (5)−0.0038 (5)
C100.0076 (6)0.0130 (7)0.0122 (6)−0.0005 (5)−0.0007 (5)−0.0032 (5)
C110.0112 (7)0.0156 (7)0.0158 (7)0.0026 (6)0.0007 (5)0.0016 (6)
C120.0090 (7)0.0173 (8)0.0195 (7)0.0037 (6)0.0004 (5)−0.0002 (6)
C130.0081 (6)0.0176 (7)0.0143 (7)−0.0025 (6)0.0025 (5)−0.0037 (6)
C140.0123 (7)0.0143 (7)0.0168 (7)−0.0006 (6)0.0000 (6)0.0013 (6)
C150.0086 (6)0.0138 (7)0.0162 (7)0.0018 (6)−0.0012 (5)−0.0008 (6)
Cl1—C131.7392 (15)C5—C61.394 (2)
S1—C71.7548 (15)C5—H50.9500
S1—C81.7958 (14)C8—C91.518 (2)
O1—C91.2187 (17)C8—H8A0.9900
N1—C71.3165 (19)C8—H8B0.9900
N1—C11.3955 (19)C9—C101.4920 (19)
N2—C71.3685 (18)C10—C151.396 (2)
N2—C61.3843 (19)C10—C111.400 (2)
N2—H20.88 (2)C11—C121.387 (2)
C1—C21.399 (2)C11—H110.9500
C1—C61.404 (2)C12—C131.384 (2)
C2—C31.386 (2)C12—H120.9500
C2—H2A0.9500C13—C141.392 (2)
C3—C41.403 (2)C14—C151.386 (2)
C3—H30.9500C14—H140.9500
C4—C51.388 (2)C15—H150.9500
C4—H40.9500
C7—S1—C898.65 (7)C9—C8—H8A108.9
C7—N1—C1103.95 (12)S1—C8—H8A108.9
C7—N2—C6106.36 (12)C9—C8—H8B108.9
C7—N2—H2127.0 (14)S1—C8—H8B108.9
C6—N2—H2126.0 (14)H8A—C8—H8B107.7
N1—C1—C2129.61 (13)O1—C9—C10120.76 (13)
N1—C1—C6110.45 (12)O1—C9—C8121.77 (13)
C2—C1—C6119.92 (13)C10—C9—C8117.46 (12)
C3—C2—C1117.78 (14)C15—C10—C11119.33 (13)
C3—C2—H2A121.1C15—C10—C9118.61 (13)
C1—C2—H2A121.1C11—C10—C9122.04 (13)
C2—C3—C4121.42 (14)C12—C11—C10120.44 (14)
C2—C3—H3119.3C12—C11—H11119.8
C4—C3—H3119.3C10—C11—H11119.8
C5—C4—C3121.76 (14)C11—C12—C13119.20 (14)
C5—C4—H4119.1C11—C12—H12120.4
C3—C4—H4119.1C13—C12—H12120.4
C4—C5—C6116.30 (13)C12—C13—C14121.44 (14)
C4—C5—H5121.8C12—C13—Cl1119.16 (11)
C6—C5—H5121.8C14—C13—Cl1119.40 (12)
N2—C6—C5132.02 (14)C15—C14—C13119.06 (14)
N2—C6—C1105.14 (12)C15—C14—H14120.5
C5—C6—C1122.81 (14)C13—C14—H14120.5
N1—C7—N2114.09 (13)C14—C15—C10120.53 (13)
N1—C7—S1125.23 (11)C14—C15—H15119.7
N2—C7—S1120.58 (11)C10—C15—H15119.7
C9—C8—S1113.32 (10)
C7—N1—C1—C2178.86 (15)C8—S1—C7—N1−11.63 (14)
C7—N1—C1—C60.28 (15)C8—S1—C7—N2172.27 (11)
N1—C1—C2—C3−177.76 (14)C7—S1—C8—C9−79.85 (11)
C6—C1—C2—C30.7 (2)S1—C8—C9—O1−0.39 (18)
C1—C2—C3—C4−0.4 (2)S1—C8—C9—C10−179.50 (10)
C2—C3—C4—C5−0.2 (2)O1—C9—C10—C155.2 (2)
C3—C4—C5—C60.4 (2)C8—C9—C10—C15−175.68 (13)
C7—N2—C6—C5−178.12 (15)O1—C9—C10—C11−173.18 (14)
C7—N2—C6—C10.27 (15)C8—C9—C10—C115.9 (2)
C4—C5—C6—N2178.08 (15)C15—C10—C11—C12−0.5 (2)
C4—C5—C6—C1−0.1 (2)C9—C10—C11—C12177.87 (13)
N1—C1—C6—N2−0.35 (16)C10—C11—C12—C130.5 (2)
C2—C1—C6—N2−179.09 (13)C11—C12—C13—C140.1 (2)
N1—C1—C6—C5178.23 (13)C11—C12—C13—Cl1179.83 (12)
C2—C1—C6—C5−0.5 (2)C12—C13—C14—C15−0.8 (2)
C1—N1—C7—N2−0.10 (16)Cl1—C13—C14—C15179.50 (11)
C1—N1—C7—S1−176.42 (10)C13—C14—C15—C100.8 (2)
C6—N2—C7—N1−0.12 (17)C11—C10—C15—C14−0.2 (2)
C6—N2—C7—S1176.39 (10)C9—C10—C15—C14−178.60 (13)
Cg1 and Cg2 are the centroids of the C10–C15 and N1,N2,C1,C6,C7 rings, respectively.
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.88 (2)2.14 (2)2.9104 (16)144.9 (19)
N2—H2···S1i0.88 (2)2.69 (2)3.4073 (12)139.1 (16)
C8—H8a···Cg1ii0.992.893.5678 (15)126
C8—H8b···Cg2iii0.992.763.4204 (16)125
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C10–C15 and N1,N2,C1,C6,C7 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1i0.88 (2)2.14 (2)2.9104 (16)144.9 (19)
N2—H2⋯S1i0.88 (2)2.69 (2)3.4073 (12)139.1 (16)
C8—H8a⋯Cg1ii0.992.893.5678 (15)126
C8—H8b⋯Cg2iii0.992.763.4204 (16)125

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  2-[(1H-Benzimidazol-2-yl)sulfan-yl]-1-phenyl-ethanone.

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