Literature DB >> 22798897

2-(3-Meth-oxy-phen-yl)-1,3-dihydro-1,3,2-benzodiaza-borole.

Ross S Robinson1, Siphamandla Sithebe, Matthew P Akerman.   

Abstract

The title compound, C(13)H(13)BN(2)O, is one in a series of 1,3,2-benzodiaza-boroles featuring a 2-meth-oxy-phenyl substitution at the 2-position in the nitro-gen-boron heterocyle. The dihedral angle between the mean planes of the benzodiaza-borole and 2-meth-oxy-phenyl ring systems is 21.5 (1)°. There is an inter-molecular hydrogen bond between one of the NH groups and the meth-oxy O atom. This hydrogen bond leads to an infinite hydrogen-bonded chain colinear with the a axis.

Entities:  

Year:  2012        PMID: 22798897      PMCID: PMC3394032          DOI: 10.1107/S1600536812028437

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Sithebe et al. (2011 ▶); Weber et al. (2009 ▶, 2011 ▶). For related derivatives as well as their photoluminiscence studies, see: Weber et al. (2010 ▶); Maruyama & Kawanishi (2002 ▶). For structures of related compounds, see: Slabber et al. (2011 ▶); Akerman et al. (2011 ▶). For applications of 1,3,2-diaza­borolyl compounds, see: Schwedler et al. (2011 ▶).

Experimental

Crystal data

C13H13BN2O M = 224.06 Orthorhombic, a = 7.549 (5) Å b = 12.230 (5) Å c = 12.308 (5) Å V = 1136.3 (10) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 110 K 0.50 × 0.40 × 0.40 mm

Data collection

Oxford Diffraction Xcalibur 2 CCD diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.960, T max = 0.968 11586 measured reflections 2125 independent reflections 1939 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.094 S = 1.05 2125 reflections 164 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2008 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶) and POV-RAY (Cason et al., 2002 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812028437/nk2170sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028437/nk2170Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812028437/nk2170Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H13BN2OF(000) = 472
Mr = 224.06Dx = 1.310 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 1939 reflections
a = 7.549 (5) Åθ = 3.2–32.1°
b = 12.230 (5) ŵ = 0.08 mm1
c = 12.308 (5) ÅT = 110 K
V = 1136.3 (10) Å3Needle, colourless
Z = 40.50 × 0.40 × 0.40 mm
Oxford Diffraction Xcalibur 2 CCD diffractometer2125 independent reflections
Radiation source: fine-focus sealed tube1939 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
ω scans at fixed θ anglesθmax = 32.1°, θmin = 3.2°
Absorption correction: multi-scan (Blessing, 1995)h = −11→7
Tmin = 0.960, Tmax = 0.968k = −17→18
11586 measured reflectionsl = −18→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.094w = 1/[σ2(Fo2) + (0.0725P)2] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2125 reflectionsΔρmax = 0.32 e Å3
164 parametersΔρmin = −0.20 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.058 (6)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O0010.68887 (13)0.34747 (7)1.11670 (7)0.0238 (2)
N20.86812 (15)0.17066 (8)0.71418 (8)0.0184 (2)
N10.69146 (14)0.27984 (8)0.61068 (8)0.0187 (2)
C80.85853 (16)0.12575 (9)0.61012 (9)0.0171 (2)
C20.73726 (16)0.30830 (10)0.92377 (10)0.0179 (2)
H20.78480.23800.93880.022*
C60.65474 (16)0.44957 (10)0.79625 (10)0.0217 (2)
H60.64490.47560.72380.026*
C110.78716 (17)0.07371 (10)0.39528 (10)0.0208 (2)
H110.76340.05440.32190.025*
C130.74943 (16)0.19384 (9)0.54613 (9)0.0168 (2)
C120.71345 (16)0.16880 (10)0.43846 (9)0.0194 (2)
H120.64070.21510.39540.023*
C10.72155 (16)0.34445 (10)0.81557 (9)0.0181 (2)
C90.93295 (17)0.03188 (10)0.56632 (11)0.0203 (2)
H91.0075−0.01390.60870.024*
C40.61570 (17)0.47951 (10)0.98828 (10)0.0228 (3)
H40.57890.52491.04670.027*
C30.68309 (17)0.37557 (10)1.00871 (10)0.0193 (2)
C50.60273 (18)0.51624 (10)0.88201 (11)0.0241 (3)
H50.55800.58740.86770.029*
C100.89523 (17)0.00661 (10)0.45839 (10)0.0213 (2)
H100.9442−0.05770.42720.026*
C70.7662 (2)0.24408 (11)1.14365 (11)0.0296 (3)
H7A0.69470.18521.11220.044*
H7B0.77000.23581.22280.044*
H7C0.88680.24051.11440.044*
B10.76235 (18)0.26817 (10)0.71788 (10)0.0179 (2)
H1020.940 (3)0.1411 (15)0.7630 (17)0.042 (5)*
H1010.625 (3)0.3271 (17)0.5846 (18)0.050 (6)*
U11U22U33U12U13U23
O0010.0320 (5)0.0242 (4)0.0153 (4)0.0015 (4)0.0037 (4)−0.0013 (3)
N20.0218 (5)0.0184 (4)0.0150 (4)0.0016 (4)−0.0021 (4)0.0006 (3)
N10.0233 (5)0.0172 (4)0.0156 (4)0.0040 (4)−0.0009 (4)0.0001 (4)
C80.0195 (5)0.0166 (5)0.0152 (5)−0.0009 (4)0.0005 (4)0.0018 (4)
C20.0197 (5)0.0175 (5)0.0166 (5)−0.0002 (4)0.0004 (4)−0.0011 (4)
C60.0237 (6)0.0211 (5)0.0202 (5)0.0015 (5)−0.0015 (5)0.0007 (4)
C110.0239 (6)0.0214 (5)0.0172 (5)−0.0029 (5)0.0019 (5)−0.0017 (4)
C130.0196 (5)0.0158 (4)0.0150 (5)0.0004 (4)0.0013 (4)0.0009 (4)
C120.0224 (5)0.0207 (5)0.0151 (5)0.0000 (4)−0.0003 (4)0.0006 (4)
C10.0188 (5)0.0185 (5)0.0170 (5)−0.0006 (4)−0.0008 (4)−0.0006 (4)
C90.0219 (5)0.0182 (5)0.0207 (5)0.0018 (4)0.0015 (5)0.0018 (4)
C40.0243 (6)0.0220 (6)0.0221 (6)0.0024 (5)0.0021 (5)−0.0036 (4)
C30.0202 (5)0.0210 (5)0.0166 (5)−0.0022 (4)0.0010 (4)−0.0020 (4)
C50.0265 (6)0.0194 (5)0.0265 (6)0.0047 (5)−0.0011 (5)−0.0010 (5)
C100.0242 (6)0.0180 (5)0.0219 (5)0.0004 (5)0.0041 (5)−0.0015 (4)
C70.0382 (7)0.0313 (7)0.0195 (5)0.0066 (6)0.0031 (5)0.0052 (5)
B10.0202 (5)0.0178 (5)0.0157 (5)−0.0005 (5)0.0001 (5)0.0003 (4)
O001—C31.3735 (15)C11—C101.3937 (18)
O001—C71.4316 (17)C11—C121.3945 (17)
N2—C81.3954 (15)C11—H110.9500
N2—B11.4359 (17)C13—C121.3870 (16)
N2—H1020.89 (2)C12—H120.9500
N1—C131.3888 (15)C1—B11.5527 (18)
N1—B11.4309 (17)C9—C101.3933 (19)
N1—H1010.83 (2)C9—H90.9500
C8—C91.3872 (17)C4—C51.3864 (19)
C8—C131.4115 (16)C4—C31.3921 (18)
C2—C31.3918 (16)C4—H40.9500
C2—C11.4081 (17)C5—H50.9500
C2—H20.9500C10—H100.9500
C6—C51.3903 (18)C7—H7A0.9800
C6—C11.4013 (17)C7—H7B0.9800
C6—H60.9500C7—H7C0.9800
C3—O001—C7117.27 (10)C6—C1—B1119.42 (11)
C8—N2—B1109.10 (10)C2—C1—B1121.80 (11)
C8—N2—H102119.5 (12)C8—C9—C10118.12 (12)
B1—N2—H102131.1 (12)C8—C9—H9120.9
C13—N1—B1109.52 (10)C10—C9—H9120.9
C13—N1—H101119.8 (15)C5—C4—C3119.48 (12)
B1—N1—H101130.7 (15)C5—C4—H4120.3
C9—C8—N2131.41 (11)C3—C4—H4120.3
C9—C8—C13120.51 (11)O001—C3—C2124.73 (11)
N2—C8—C13108.07 (10)O001—C3—C4114.51 (11)
C3—C2—C1120.01 (11)C2—C3—C4120.76 (12)
C3—C2—H2120.0C4—C5—C6120.41 (12)
C1—C2—H2120.0C4—C5—H5119.8
C5—C6—C1120.72 (12)C6—C5—H5119.8
C5—C6—H6119.6C9—C10—C11121.36 (12)
C1—C6—H6119.6C9—C10—H10119.3
C10—C11—C12120.81 (12)C11—C10—H10119.3
C10—C11—H11119.6O001—C7—H7A109.5
C12—C11—H11119.6O001—C7—H7B109.5
C12—C13—N1130.70 (11)H7A—C7—H7B109.5
C12—C13—C8121.14 (11)O001—C7—H7C109.5
N1—C13—C8108.15 (10)H7A—C7—H7C109.5
C13—C12—C11118.05 (12)H7B—C7—H7C109.5
C13—C12—H12121.0N1—B1—N2105.16 (10)
C11—C12—H12121.0N1—B1—C1125.44 (11)
C6—C1—C2118.61 (11)N2—B1—C1129.33 (11)
B1—N2—C8—C9−178.52 (13)C7—O001—C3—C4−176.53 (12)
B1—N2—C8—C130.68 (13)C1—C2—C3—O001178.47 (12)
B1—N1—C13—C12178.50 (13)C1—C2—C3—C4−1.02 (18)
B1—N1—C13—C8−0.17 (14)C5—C4—C3—O001−179.61 (12)
C9—C8—C13—C120.17 (18)C5—C4—C3—C2−0.07 (19)
N2—C8—C13—C12−179.14 (11)C3—C4—C5—C60.7 (2)
C9—C8—C13—N1178.99 (10)C1—C6—C5—C4−0.2 (2)
N2—C8—C13—N1−0.32 (13)C8—C9—C10—C110.53 (18)
N1—C13—C12—C11−178.02 (12)C12—C11—C10—C90.14 (19)
C8—C13—C12—C110.50 (18)C13—N1—B1—N20.57 (13)
C10—C11—C12—C13−0.65 (18)C13—N1—B1—C1−176.89 (11)
C5—C6—C1—C2−0.88 (19)C8—N2—B1—N1−0.76 (13)
C5—C6—C1—B1174.46 (12)C8—N2—B1—C1176.55 (12)
C3—C2—C1—C61.48 (18)C6—C1—B1—N1−19.86 (19)
C3—C2—C1—B1−173.75 (12)C2—C1—B1—N1155.33 (12)
N2—C8—C9—C10178.44 (12)C6—C1—B1—N2163.32 (12)
C13—C8—C9—C10−0.68 (17)C2—C1—B1—N2−21.5 (2)
C7—O001—C3—C23.95 (18)
D—H···AD—HH···AD···AD—H···A
N2—H102···O001i0.89 (2)2.40 (2)3.201 (2)151 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H102⋯O001i 0.89 (2)2.40 (2)3.201 (2)151 (2)

Symmetry code: (i) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  Solvatochromism and fluoride sensing of thienyl-containing benzodiazaboroles.

Authors:  Stefanie Schwedler; Daniel Eickhoff; Regina Brockhinke; Deepa Cherian; Lothar Weber; Andreas Brockhinke
Journal:  Phys Chem Chem Phys       Date:  2011-04-08       Impact factor: 3.676

4.  Synthetic, structural, photophysical and computational studies of pi-conjugated bis- and tris-1,3,2-benzodiazaboroles and related bis(boryl) dithiophenes.

Authors:  Lothar Weber; Vanessa Werner; Mark A Fox; Todd B Marder; Stefanie Schwedler; Andreas Brockhinke; Hans-Georg Stammler; Beate Neumann
Journal:  Dalton Trans       Date:  2009-02-28       Impact factor: 4.390

5.  2-[4-(Methyl-sulfan-yl)phen-yl]naphtho[1,8-de][1,3,2]diaza-borinane.

Authors:  Cathryn A Slabber; Matthew P Akerman; Ross S Robinson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-07

6.  2-(4-Chloro-phen-yl)naphtho-[1,8-de][1,3,2]diaza-borinane.

Authors:  Matthew P Akerman; Ross S Robinson; Cathryn A Slabber
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-02
  6 in total

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