Literature DB >> 22798880

Methyl α-l-rhamnosyl-(1→2)[α-l-rhamnosyl-(1→3)]-α-l-rhamnoside penta-hydrate: synchrotron study.

Lars Eriksson, Göran Widmalm.   

Abstract

The title hydrate, C(19)H(34)O(13)·5H(2)O, contains a vicinally disubstituted tris-accharide in which the two terminal rhamnosyl sugar groups are positioned adjacent to each other. The conformation of the tris-accharide is described by the glycosidic torsion angles ϕ2 = 48 (1)°, ψ2 = -29 (1)°, ϕ3 = 44 (1)° and ψ3 = 4 (1)°, whereas the ψ2 torsion angle represents a conformation from the major state in solution, the ψ3 torsion angle conformation may have been caught near a potential energy saddle-point when compared to its solution structure, in which at least two but probably three conformational states are populated. Extensive inter-molecular O-H⋯O hydrogen bonding is present in the crystal and a water-containing channel is formed along the b-axis direction.

Entities:  

Year:  2012        PMID: 22798880      PMCID: PMC3394015          DOI: 10.1107/S1600536812027390

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a description of l-rhamnose as part of polysaccharides, see: Marie et al. (1998 ▶); Perry & MacLean (2000 ▶). For a description of the conformational dynamics of the title tris­accharide, see: Eklund et al. (2005 ▶); Jonsson et al. (2011 ▶). For a description of the puckering analysis of the residues, see: Cremer & Pople (1975 ▶). For further background to l-rhamnose, see: Ansaruzzaman et al. (1996 ▶); Varki et al. (1999) ▶; Kulber-Kielb et al. (2007 ▶); Lindberg (1998 ▶); Säwén et al. (2010 ▶).

Experimental

Crystal data

C19H34O13·5H2O M = 560.54 Monoclinic, a = 19.345 (3) Å b = 6.4870 (13) Å c = 21.145 (3) Å β = 97.617 (14)° V = 2630.0 (8) Å3 Z = 4 Synchrotron radiation λ = 0.8970 Å μ = 0.22 mm−1 T = 100 K 0.20 × 0.05 × 0.01 mm

Data collection

Bruker SMART 1K CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2002 ▶) T min = 0.97, T max = 0.99 17172 measured reflections 2906 independent reflections 2655 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.087 S = 1.07 2906 reflections 376 parameters 16 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.56 e Å−3 Δρmin = −0.29 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812027390/hb6841sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812027390/hb6841Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H34O13·5H2OF(000) = 1208
Mr = 560.54Dx = 1.416 Mg m3
Monoclinic, C2Synchrotron radiation, λ = 0.8970 Å
Hall symbol: C 2yCell parameters from 963 reflections
a = 19.345 (3) Åθ = 2.5–39.8°
b = 6.4870 (13) ŵ = 0.22 mm1
c = 21.145 (3) ÅT = 100 K
β = 97.617 (14)°Plate, colourless
V = 2630.0 (8) Å30.20 × 0.05 × 0.01 mm
Z = 4
Bruker SMART 1K CCD diffractometer2906 independent reflections
Radiation source: Beamline I711, Maxlab2655 reflections with I > 2σ(I)
Silicon monochromatorRint = 0.046
Detector resolution: 10 pixels mm-1θmax = 34.1°, θmin = 2.5°
ω scan at different φh = −23→24
Absorption correction: multi-scan (SADABS; Sheldrick, 2002)k = −8→8
Tmin = 0.97, Tmax = 0.99l = −23→26
17172 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.087H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0607P)2] where P = (Fo2 + 2Fc2)/3
2906 reflections(Δ/σ)max < 0.001
376 parametersΔρmax = 0.56 e Å3
16 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
OW10.93266 (10)−0.3863 (3)0.46456 (9)0.0236 (4)
H1010.9098 (15)−0.456 (4)0.4905 (12)0.035*
H1020.9424 (17)−0.474 (4)0.4352 (12)0.035*
OW20.55372 (9)−0.3755 (3)0.25876 (10)0.0244 (4)
H2010.5191 (11)−0.458 (4)0.2626 (15)0.037*
H2020.5911 (10)−0.422 (5)0.2816 (14)0.037*
OW30.93523 (9)0.2971 (3)0.37476 (9)0.0213 (4)
H3010.9740 (11)0.225 (5)0.3809 (13)0.032*
H3020.9301 (15)0.339 (5)0.3350 (8)0.032*
OW40.85929 (11)−0.0490 (3)0.41056 (10)0.0321 (5)
H4010.8879 (15)0.052 (4)0.4032 (17)0.048*
H4020.8891 (14)−0.133 (4)0.4327 (16)0.048*
OW51.04589 (10)0.0556 (3)0.43863 (9)0.0271 (4)
H5011.0791 (14)0.144 (5)0.4484 (14)0.041*
H5021.0265 (15)0.022 (5)0.4722 (11)0.041*
C110.85217 (11)−0.0103 (3)0.23565 (11)0.0109 (5)
H110.85270.09850.26920.013*
C120.88270 (11)−0.2061 (3)0.26740 (11)0.0116 (5)
H120.8528−0.25730.29920.014*
C130.88938 (12)−0.3693 (3)0.21708 (11)0.0126 (5)
H130.8419−0.40740.19570.015*
C140.93200 (12)−0.2870 (3)0.16795 (11)0.0116 (5)
H140.9806−0.25870.18860.014*
C150.89936 (12)−0.0874 (4)0.13897 (11)0.0121 (5)
H150.8521−0.11810.11570.014*
O150.89286 (8)0.0599 (2)0.18944 (7)0.0107 (3)
O120.94950 (8)−0.1441 (2)0.29873 (8)0.0133 (4)
H12A0.9670−0.24050.32210.020*
O130.92191 (9)−0.5475 (3)0.24839 (8)0.0174 (4)
H13A0.9233−0.64270.22170.026*
O140.93366 (8)−0.4346 (3)0.11879 (8)0.0155 (4)
H14A0.9728−0.49260.12300.023*
C160.94325 (14)0.0139 (4)0.09399 (12)0.0192 (5)
H16A0.92050.14120.07710.029*
H16B0.9485−0.08010.05860.029*
H16C0.98930.04650.11690.029*
C210.74537 (12)0.1967 (4)0.12541 (11)0.0135 (5)
H210.79510.19230.11730.016*
C220.74289 (11)0.1369 (3)0.19460 (11)0.0109 (5)
H220.76280.25130.22310.013*
O220.78200 (8)−0.0481 (2)0.21047 (7)0.0106 (3)
C230.66745 (11)0.0994 (3)0.20516 (11)0.0105 (5)
H230.64170.23290.19860.013*
C240.63267 (11)−0.0554 (4)0.15733 (11)0.0120 (5)
H240.6584−0.18930.16150.014*
C250.63456 (12)0.0347 (4)0.09175 (11)0.0147 (5)
H250.61150.17300.08960.018*
O230.66298 (8)0.0302 (2)0.26878 (7)0.0111 (3)
O240.56178 (8)−0.0859 (3)0.16682 (8)0.0151 (4)
H24A0.5600−0.17060.19660.023*
O250.70645 (8)0.0599 (3)0.08206 (8)0.0150 (4)
C260.59920 (13)−0.0981 (5)0.03875 (12)0.0228 (6)
H26A0.6034−0.0334−0.00240.034*
H26B0.5498−0.11320.04360.034*
H26C0.6213−0.23420.04060.034*
O270.72203 (9)0.4015 (2)0.11823 (8)0.0160 (4)
C270.74020 (15)0.4932 (5)0.06129 (14)0.0277 (6)
H27A0.78950.46600.05810.042*
H27B0.73240.64230.06250.042*
H27C0.71120.43410.02420.042*
C310.62082 (12)0.1575 (4)0.30105 (11)0.0110 (5)
H310.57760.19230.27150.013*
C320.60030 (11)0.0409 (4)0.35762 (10)0.0110 (5)
H320.5808−0.09560.34220.013*
C330.66440 (12)0.0023 (3)0.40588 (11)0.0106 (5)
H330.6966−0.08940.38540.013*
C340.70281 (12)0.2040 (3)0.42416 (11)0.0108 (5)
H340.67190.29600.44600.013*
C350.72015 (12)0.3104 (3)0.36380 (11)0.0111 (5)
H350.75150.21940.34220.013*
O350.65577 (8)0.3437 (2)0.32144 (7)0.0117 (3)
O320.54699 (8)0.1518 (3)0.38395 (8)0.0126 (3)
H32A0.56450.25580.40370.019*
O330.64458 (8)−0.1032 (2)0.45946 (8)0.0133 (4)
H33A0.6805−0.13880.48380.020*
O340.76396 (8)0.1594 (3)0.46677 (8)0.0157 (4)
H34A0.78980.08050.44880.024*
C360.75423 (13)0.5176 (4)0.37637 (12)0.0187 (5)
H36A0.75460.59100.33590.028*
H36B0.80230.49850.39690.028*
H36C0.72810.59800.40440.028*
U11U22U33U12U13U23
OW10.0248 (10)0.0236 (10)0.0246 (10)0.0013 (8)0.0114 (8)−0.0030 (8)
OW20.0130 (9)0.0193 (9)0.0394 (12)−0.0022 (8)−0.0019 (8)0.0144 (8)
OW30.0211 (10)0.0208 (9)0.0218 (10)−0.0004 (8)0.0019 (8)−0.0010 (8)
OW40.0354 (12)0.0274 (11)0.0349 (12)−0.0050 (10)0.0102 (10)0.0050 (9)
OW50.0270 (11)0.0176 (9)0.0343 (11)−0.0025 (8)−0.0046 (9)0.0022 (9)
C110.0078 (11)0.0104 (10)0.0138 (11)−0.0012 (9)−0.0008 (9)−0.0032 (9)
C120.0066 (11)0.0135 (11)0.0143 (12)−0.0022 (9)0.0000 (9)−0.0007 (9)
C130.0112 (11)0.0085 (10)0.0171 (12)−0.0003 (9)−0.0018 (9)0.0011 (9)
C140.0086 (11)0.0113 (10)0.0139 (11)0.0015 (9)−0.0025 (9)−0.0015 (9)
C150.0108 (11)0.0108 (10)0.0140 (12)−0.0002 (9)−0.0006 (9)−0.0005 (9)
O150.0098 (8)0.0089 (7)0.0133 (8)0.0001 (6)0.0020 (6)−0.0003 (7)
O120.0097 (8)0.0133 (8)0.0149 (9)0.0010 (7)−0.0055 (6)0.0006 (7)
O130.0251 (9)0.0082 (8)0.0185 (9)0.0040 (7)0.0017 (7)0.0012 (7)
O140.0131 (8)0.0163 (8)0.0164 (9)0.0063 (7)−0.0006 (7)−0.0047 (7)
C160.0241 (14)0.0176 (12)0.0172 (13)0.0002 (10)0.0075 (10)0.0026 (10)
C210.0104 (12)0.0126 (11)0.0179 (12)0.0031 (9)0.0032 (9)0.0022 (10)
C220.0080 (11)0.0083 (10)0.0161 (12)0.0034 (9)0.0009 (9)−0.0015 (9)
O220.0055 (8)0.0099 (7)0.0156 (8)0.0017 (6)−0.0012 (6)0.0010 (6)
C230.0092 (11)0.0120 (11)0.0100 (11)0.0023 (9)0.0003 (8)0.0011 (9)
C240.0054 (10)0.0154 (11)0.0154 (11)0.0028 (9)0.0014 (9)−0.0010 (10)
C250.0100 (11)0.0196 (12)0.0139 (12)0.0027 (10)−0.0010 (9)0.0000 (10)
O230.0088 (8)0.0131 (8)0.0113 (8)0.0038 (6)0.0016 (6)0.0013 (7)
O240.0084 (8)0.0199 (9)0.0167 (9)−0.0017 (7)0.0007 (6)0.0043 (7)
O250.0124 (8)0.0204 (9)0.0123 (8)0.0013 (7)0.0018 (6)−0.0015 (7)
C260.0146 (13)0.0365 (15)0.0163 (13)−0.0014 (11)−0.0014 (10)−0.0060 (12)
O270.0161 (9)0.0126 (8)0.0199 (9)0.0052 (7)0.0050 (7)0.0070 (7)
C270.0283 (15)0.0270 (14)0.0291 (15)0.0056 (12)0.0082 (12)0.0162 (12)
C310.0073 (10)0.0126 (10)0.0128 (11)0.0009 (9)−0.0004 (8)−0.0017 (9)
C320.0092 (11)0.0102 (10)0.0131 (11)−0.0006 (9)−0.0004 (9)−0.0008 (9)
C330.0118 (11)0.0079 (10)0.0124 (11)0.0010 (9)0.0030 (9)0.0017 (9)
C340.0101 (11)0.0097 (10)0.0123 (11)0.0004 (9)−0.0003 (9)−0.0017 (9)
C350.0074 (11)0.0118 (11)0.0137 (12)0.0013 (9)−0.0005 (9)−0.0012 (9)
O350.0111 (8)0.0106 (7)0.0125 (8)0.0002 (6)−0.0015 (6)0.0001 (6)
O320.0087 (8)0.0153 (8)0.0142 (8)0.0009 (7)0.0029 (6)0.0009 (7)
O330.0105 (8)0.0141 (8)0.0142 (8)0.0013 (7)−0.0024 (6)0.0036 (7)
O340.0103 (8)0.0193 (9)0.0165 (9)0.0017 (7)−0.0022 (7)0.0008 (7)
C360.0204 (13)0.0152 (12)0.0201 (13)−0.0065 (10)0.0006 (10)−0.0002 (10)
OW1—H1010.875 (15)C23—O231.432 (3)
OW1—H1020.879 (15)C23—C241.517 (3)
OW2—H2010.871 (15)C23—H231.0000
OW2—H2020.869 (15)C24—O241.426 (3)
OW3—H3010.878 (14)C24—C251.510 (3)
OW3—H3020.877 (14)C24—H241.0000
OW4—H4010.883 (15)C25—O251.442 (3)
OW4—H4020.883 (15)C25—C261.504 (3)
OW5—H5010.867 (15)C25—H251.0000
OW5—H5020.873 (14)O23—C311.400 (3)
C11—O151.409 (3)O24—H24A0.8400
C11—O221.412 (3)C26—H26A0.9800
C11—C121.519 (3)C26—H26B0.9800
C11—H111.0000C26—H26C0.9800
C12—O121.429 (3)O27—C271.428 (3)
C12—C131.519 (3)C27—H27A0.9800
C12—H121.0000C27—H27B0.9800
C13—O131.435 (3)C27—H27C0.9800
C13—C141.507 (3)C31—O351.423 (3)
C13—H131.0000C31—C321.512 (3)
C14—O141.417 (3)C31—H311.0000
C14—C151.532 (3)C32—O321.429 (3)
C14—H141.0000C32—C331.519 (3)
C15—O151.451 (3)C32—H321.0000
C15—C161.507 (3)C33—O331.419 (3)
C15—H151.0000C33—C341.529 (3)
O12—H12A0.8400C33—H331.0000
O13—H13A0.8400C34—O341.419 (3)
O14—H14A0.8400C34—C351.527 (3)
C16—H16A0.9800C34—H341.0000
C16—H16B0.9800C35—O351.451 (3)
C16—H16C0.9800C35—C361.505 (3)
C21—O271.405 (3)C35—H351.0000
C21—O251.419 (3)O32—H32A0.8400
C21—C221.521 (3)O33—H33A0.8400
C21—H211.0000O34—H34A0.8400
C22—O221.434 (3)C36—H36A0.9800
C22—C231.525 (3)C36—H36B0.9800
C22—H221.0000C36—H36C0.9800
H101—OW1—H102106 (2)C25—C24—C23107.07 (19)
H201—OW2—H202109 (2)O24—C24—H24110.2
H301—OW3—H302107 (2)C25—C24—H24110.2
H401—OW4—H402100 (2)C23—C24—H24110.2
H501—OW5—H502111 (2)O25—C25—C26108.12 (19)
O15—C11—O22113.08 (18)O25—C25—C24108.40 (17)
O15—C11—C12110.89 (18)C26—C25—C24113.5 (2)
O22—C11—C12108.63 (17)O25—C25—H25108.9
O15—C11—H11108.0C26—C25—H25108.9
O22—C11—H11108.0C24—C25—H25108.9
C12—C11—H11108.0C31—O23—C23112.64 (17)
O12—C12—C13111.41 (18)C24—O24—H24A109.5
O12—C12—C11104.15 (17)C21—O25—C25114.75 (17)
C13—C12—C11109.73 (18)C25—C26—H26A109.5
O12—C12—H12110.5C25—C26—H26B109.5
C13—C12—H12110.5H26A—C26—H26B109.5
C11—C12—H12110.5C25—C26—H26C109.5
O13—C13—C14110.90 (19)H26A—C26—H26C109.5
O13—C13—C12108.14 (18)H26B—C26—H26C109.5
C14—C13—C12109.94 (19)C21—O27—C27111.92 (19)
O13—C13—H13109.3O27—C27—H27A109.5
C14—C13—H13109.3O27—C27—H27B109.5
C12—C13—H13109.3H27A—C27—H27B109.5
O14—C14—C13109.53 (18)O27—C27—H27C109.5
O14—C14—C15109.00 (18)H27A—C27—H27C109.5
C13—C14—C15109.94 (19)H27B—C27—H27C109.5
O14—C14—H14109.5O23—C31—O35111.35 (18)
C13—C14—H14109.5O23—C31—C32108.77 (18)
C15—C14—H14109.5O35—C31—C32110.42 (18)
O15—C15—C16106.72 (19)O23—C31—H31108.7
O15—C15—C14109.51 (17)O35—C31—H31108.7
C16—C15—C14112.6 (2)C32—C31—H31108.7
O15—C15—H15109.3O32—C32—C31109.59 (18)
C16—C15—H15109.3O32—C32—C33112.85 (18)
C14—C15—H15109.3C31—C32—C33109.72 (18)
C11—O15—C15114.07 (17)O32—C32—H32108.2
C12—O12—H12A109.5C31—C32—H32108.2
C13—O13—H13A109.5C33—C32—H32108.2
C14—O14—H14A109.5O33—C33—C32109.45 (18)
C15—C16—H16A109.5O33—C33—C34112.62 (18)
C15—C16—H16B109.5C32—C33—C34110.77 (18)
H16A—C16—H16B109.5O33—C33—H33107.9
C15—C16—H16C109.5C32—C33—H33107.9
H16A—C16—H16C109.5C34—C33—H33107.9
H16B—C16—H16C109.5O34—C34—C35111.48 (18)
O27—C21—O25112.73 (18)O34—C34—C33108.79 (18)
O27—C21—C22107.14 (19)C35—C34—C33109.19 (17)
O25—C21—C22112.34 (19)O34—C34—H34109.1
O27—C21—H21108.2C35—C34—H34109.1
O25—C21—H21108.2C33—C34—H34109.1
C22—C21—H21108.2O35—C35—C36107.24 (18)
O22—C22—C21110.84 (18)O35—C35—C34108.53 (18)
O22—C22—C23108.53 (17)C36—C35—C34113.29 (19)
C21—C22—C23109.54 (18)O35—C35—H35109.2
O22—C22—H22109.3C36—C35—H35109.2
C21—C22—H22109.3C34—C35—H35109.2
C23—C22—H22109.3C31—O35—C35113.29 (16)
C11—O22—C22113.20 (16)C32—O32—H32A109.5
O23—C23—C24110.01 (18)C33—O33—H33A109.5
O23—C23—C22111.45 (17)C34—O34—H34A109.5
C24—C23—C22110.88 (18)C35—C36—H36A109.5
O23—C23—H23108.1C35—C36—H36B109.5
C24—C23—H23108.1H36A—C36—H36B109.5
C22—C23—H23108.1C35—C36—H36C109.5
O24—C24—C25108.90 (17)H36A—C36—H36C109.5
O24—C24—C23110.37 (18)H36B—C36—H36C109.5
O15—C11—C12—O1263.1 (2)C22—C23—C24—C25−60.4 (2)
O22—C11—C12—O12−172.08 (17)O24—C24—C25—O25−178.52 (18)
O15—C11—C12—C13−56.3 (2)C23—C24—C25—O2562.1 (2)
O22—C11—C12—C1368.6 (2)O24—C24—C25—C26−58.4 (3)
O12—C12—C13—O1362.0 (2)C23—C24—C25—C26−177.72 (19)
C11—C12—C13—O13176.82 (17)C24—C23—O23—C31−113.6 (2)
O12—C12—C13—C14−59.2 (2)C22—C23—O23—C31122.95 (19)
C11—C12—C13—C1455.6 (2)O27—C21—O25—C25−65.9 (2)
O13—C13—C14—O1464.7 (2)C22—C21—O25—C2555.2 (2)
C12—C13—C14—O14−175.75 (17)C26—C25—O25—C21174.83 (19)
O13—C13—C14—C15−175.54 (17)C24—C25—O25—C21−61.7 (2)
C12—C13—C14—C15−56.0 (2)O25—C21—O27—C27−72.3 (2)
O14—C14—C15—O15176.01 (17)C22—C21—O27—C27163.6 (2)
C13—C14—C15—O1555.9 (2)C23—O23—C31—O35−76.1 (2)
O14—C14—C15—C16−65.4 (2)C23—O23—C31—C32162.03 (16)
C13—C14—C15—C16174.51 (19)O23—C31—C32—O32−169.04 (17)
O22—C11—O15—C15−63.2 (2)O35—C31—C32—O3268.5 (2)
C12—C11—O15—C1559.1 (2)O23—C31—C32—C3366.5 (2)
C16—C15—O15—C11179.25 (18)O35—C31—C32—C33−55.9 (2)
C14—C15—O15—C11−58.6 (2)O32—C32—C33—O3356.2 (2)
O27—C21—C22—O22−165.21 (16)C31—C32—C33—O33178.75 (18)
O25—C21—C22—O2270.5 (2)O32—C32—C33—C34−68.5 (2)
O27—C21—C22—C2375.1 (2)C31—C32—C33—C3454.0 (2)
O25—C21—C22—C23−49.3 (2)O33—C33—C34—O3459.9 (2)
O15—C11—O22—C22−72.0 (2)C32—C33—C34—O34−177.17 (18)
C12—C11—O22—C22164.44 (18)O33—C33—C34—C35−178.26 (18)
C21—C22—O22—C1191.8 (2)C32—C33—C34—C35−55.3 (2)
C23—C22—O22—C11−147.87 (18)O34—C34—C35—O35177.68 (17)
O22—C22—C23—O2355.3 (2)C33—C34—C35—O3557.5 (2)
C21—C22—C23—O23176.42 (18)O34—C34—C35—C36−63.3 (2)
O22—C22—C23—C24−67.6 (2)C33—C34—C35—C36176.44 (19)
C21—C22—C23—C2453.5 (2)O23—C31—O35—C35−59.2 (2)
O23—C23—C24—O2457.5 (2)C32—C31—O35—C3561.8 (2)
C22—C23—C24—O24−178.80 (17)C36—C35—O35—C31174.92 (19)
O23—C23—C24—C25175.84 (17)C34—C35—O35—C31−62.4 (2)
D—H···AD—HH···AD···AD—H···A
OW1—H101···O33i0.88 (3)1.85 (3)2.726 (2)176 (2)
OW1—H102···OW3ii0.88 (3)1.95 (3)2.802 (2)162 (2)
OW1—H102···O32iii0.88 (3)2.55 (3)2.976 (2)110 (2)
OW2—H201···O12iv0.88 (3)2.03 (3)2.875 (2)163 (2)
OW2—H202···O35ii0.87 (3)2.08 (3)2.877 (2)153 (2)
OW3—H301···OW50.88 (3)2.04 (3)2.845 (2)151 (2)
OW3—H302···O13v0.88 (3)1.96 (3)2.836 (2)176 (2)
OW4—H401···OW30.88 (3)1.97 (3)2.840 (2)168 (2)
OW4—H402···OW10.88 (3)1.92 (3)2.771 (2)160 (2)
OW5—H501···O33vi0.87 (3)2.07 (3)2.918 (2)168 (2)
OW5—H502···OW5vii0.87 (3)2.50 (3)3.333 (2)159 (2)
O12—H12A···O32iii0.842.012.767 (2)149
O13—H13A···O15ii0.842.102.858 (2)149
O14—H14A···O24iii0.841.952.733 (2)157
O24—H24A···OW20.841.882.722 (2)176
O32—H32A···OW5viii0.842.132.864 (2)146
O33—H33A···O34i0.841.912.684 (2)152
O34—H34A···OW40.841.862.687 (2)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
OW1—H101⋯O33i 0.88 (3)1.85 (3)2.726 (2)176 (2)
OW1—H102⋯OW3ii 0.88 (3)1.95 (3)2.802 (2)162 (2)
OW1—H102⋯O32iii 0.88 (3)2.55 (3)2.976 (2)110 (2)
OW2—H201⋯O12iv 0.88 (3)2.03 (3)2.875 (2)163 (2)
OW2—H202⋯O35ii 0.87 (3)2.08 (3)2.877 (2)153 (2)
OW3—H301⋯OW50.88 (3)2.04 (3)2.845 (2)151 (2)
OW3—H302⋯O13v 0.88 (3)1.96 (3)2.836 (2)176 (2)
OW4—H401⋯OW30.88 (3)1.97 (3)2.840 (2)168 (2)
OW4—H402⋯OW10.88 (3)1.92 (3)2.771 (2)160 (2)
OW5—H501⋯O33vi 0.87 (3)2.07 (3)2.918 (2)168 (2)
OW5—H502⋯OW5vii 0.87 (3)2.50 (3)3.333 (2)159 (2)
O12—H12A⋯O32iii 0.842.012.767 (2)149
O13—H13A⋯O15ii 0.842.102.858 (2)149
O14—H14A⋯O24iii 0.841.952.733 (2)157
O24—H24A⋯OW20.841.882.722 (2)176
O32—H32A⋯OW5viii 0.842.132.864 (2)146
O33—H33A⋯O34i 0.841.912.684 (2)152
O34—H34A⋯OW40.841.862.687 (2)168

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .

  9 in total

1.  NMR analysis of conformationally dependent (n)J(C, H) and (n)J(C, C) in the trisaccharide α-L-Rhap-(1 → 2)[α-L-Rhap-(1 → 3)]-α-L-Rhap-OMe and a site-specifically labeled isotopologue thereof.

Authors:  K Hanna M Jonsson; Robert Pendrill; Göran Widmalm
Journal:  Magn Reson Chem       Date:  2011-01-28       Impact factor: 2.447

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structural studies of the O-antigenic polysaccharide from Escherichia coli O139.

Authors:  C Marie; A Weintraub; G Widmalm
Journal:  Eur J Biochem       Date:  1998-06-01

4.  Population distribution of flexible molecules from maximum entropy analysis using different priors as background information: application to the Φ, Ψ-conformational space of the α-(1-->2)-linked mannose disaccharide present in N- and O-linked glycoproteins.

Authors:  Elin Säwén; Tariq Massad; Clas Landersjö; Peter Damberg; Göran Widmalm
Journal:  Org Biomol Chem       Date:  2010-06-24       Impact factor: 3.876

5.  A conformational dynamics study of alpha-l-Rhap-(1-->2)[alpha-l-Rhap-(1-->3)]-alpha-l-Rhap-OMe in solution by NMR experiments and molecular simulations.

Authors:  Robert Eklund; Kristina Lycknert; Peter Söderman; Göran Widmalm
Journal:  J Phys Chem B       Date:  2005-10-27       Impact factor: 2.991

6.  Structural identification of the lipopolysaccharide O-antigen produced by Yersinia enterocolitica serotype O:28.

Authors:  M B Perry; L L MacLean
Journal:  Eur J Biochem       Date:  2000-05

7.  O-Acetylation in the O-specific polysaccharide isolated from Shigella flexneri serotype 2a.

Authors:  Joanna Kubler-Kielb; Evgeny Vinogradov; Chiayung Chu; Rachel Schneerson
Journal:  Carbohydr Res       Date:  2006-11-07       Impact factor: 2.104

8.  A Klebsiella pneumoniae strain that shares a type-specific antigen with Shigella flexneri serotype 6. Characterization of the strain and strain and structural studies of the O-antigenic polysaccharide.

Authors:  M Ansaruzzaman; M J Albert; T Holme; P E Jansson; M M Rahman; G Widmalm
Journal:  Eur J Biochem       Date:  1996-05-01

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total
  3 in total

1.  Bifurcated hydrogen bonding and asymmetric fluctuations in a carbohydrate crystal studied via X-ray crystallography and computational analysis.

Authors:  Xibing He; Elizabeth Hatcher; Lars Eriksson; Göran Widmalm; Alexander D MacKerell
Journal:  J Phys Chem B       Date:  2013-06-19       Impact factor: 2.991

2.  Methyl 4-O-benzyl-α-l-rhamno-pyrano-side.

Authors:  Robert Pendrill; Lars Eriksson; Göran Widmalm
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-16

3.  Crystal structure of methyl α-l-rhamno-pyranosyl-(1→2)-α-l-rhamno-pyran-oside monohydrate.

Authors:  Lars Eriksson; Göran Widmalm
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-05-24
  3 in total

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