Literature DB >> 22798868

2-Amino-4-(4-meth-oxy-phen-yl)-7,7-di-methyl-5-oxo-5,6,7,8-tetra-hydro-4H-chromene-3-carbonitrile propan-2-one monosolvate.

Shaaban K Mohamed, Mehmet Akkurt, Muhammad N Tahir, Antar A Abdelhamid, M A Allahverdiyev.   

Abstract

In the crystal structure of the title compound, C(19)H(20)N(2)O(3)·C(3)H(6)O, mol-ecules are linked into inversion dimers with an R(2) (2)(12) motif by pairs of N-H⋯N hydrogen bonds. These dimers are further connected into chains running along the a axis by N-H⋯O hydrogen bonds. C-H⋯N and C-H⋯π inter-actions also feature in the packing. The cyclohexene ring adopts nearly an envelope conformation [puckering parameters are Q(T) = 0.456 (2) Å, θ = 54.6 (3)° and ϕ = 225.2 (3)°].

Entities:  

Year:  2012        PMID: 22798868      PMCID: PMC3394003          DOI: 10.1107/S160053681202781X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmacological properties of 4H-chromene and fused 4H-chromene derivatives, see: Kemnitzer et al. (2007 ▶, 2008 ▶); Abd-El-Aziz et al. (2004 ▶, 2007 ▶); Sabry et al. (2011 ▶); Gourdeau et al. (2004 ▶); Mahdavi et al. (2011 ▶); Brühlmann et al. (2001 ▶). For a related structure, see: Mohamed et al. (2012 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C19H20N2O3·C3H6O M = 382.45 Triclinic, a = 8.2037 (4) Å b = 9.5319 (4) Å c = 13.8390 (7) Å α = 77.743 (2)° β = 87.307 (3)° γ = 80.672 (2)° V = 1043.43 (9) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.28 × 0.22 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.978, T max = 0.983 16752 measured reflections 4917 independent reflections 3284 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.182 S = 1.04 4917 reflections 246 parameters 1 restraint H-atom parameters constrained Δρmax = 0.59 e Å−3 Δρmin = −0.50 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681202781X/bt5943sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202781X/bt5943Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681202781X/bt5943Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H20N2O3·C3H6OZ = 2
Mr = 382.45F(000) = 408
Triclinic, P1Dx = 1.217 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.2037 (4) ÅCell parameters from 360 reflections
b = 9.5319 (4) Åθ = 21.3–3.4°
c = 13.8390 (7) ŵ = 0.08 mm1
α = 77.743 (2)°T = 296 K
β = 87.307 (3)°Prism, white
γ = 80.672 (2)°0.28 × 0.22 × 0.20 mm
V = 1043.43 (9) Å3
Bruker Kappa APEXII CCD diffractometer4917 independent reflections
Radiation source: fine-focus sealed tube3284 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
Detector resolution: 0.81 pixels mm-1θmax = 28.0°, θmin = 2.2°
ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −12→9
Tmin = 0.978, Tmax = 0.983l = −18→18
16752 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.182H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0878P)2 + 0.2431P] where P = (Fo2 + 2Fc2)/3
4917 reflections(Δ/σ)max < 0.001
246 parametersΔρmax = 0.59 e Å3
1 restraintΔρmin = −0.50 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4032 (2)0.66247 (19)0.08006 (13)0.0802 (7)
O21.02042 (14)0.08753 (13)0.35411 (10)0.0488 (4)
O30.45650 (17)0.03885 (16)0.37857 (13)0.0629 (6)
N10.8196 (2)0.4700 (2)0.51973 (16)0.0656 (7)
N21.14500 (19)0.24295 (18)0.41136 (14)0.0563 (6)
C10.6070 (2)0.33700 (18)0.31182 (14)0.0399 (5)
C20.6619 (2)0.3463 (2)0.21430 (15)0.0483 (6)
C30.5919 (3)0.4548 (2)0.13983 (16)0.0543 (7)
C40.4642 (3)0.5588 (2)0.16012 (16)0.0532 (7)
C50.4076 (2)0.5523 (2)0.25594 (17)0.0549 (7)
C60.4797 (2)0.4416 (2)0.33068 (15)0.0473 (6)
C70.2741 (4)0.7714 (3)0.0945 (2)0.0952 (11)
C80.6896 (2)0.22102 (18)0.39559 (14)0.0389 (5)
C90.8474 (2)0.26366 (19)0.42629 (14)0.0437 (4)
C100.9993 (2)0.20384 (19)0.39964 (14)0.0419 (5)
C110.8333 (2)0.37739 (19)0.47771 (14)0.0437 (4)
C120.8867 (2)0.02105 (18)0.34609 (14)0.0408 (5)
C130.7325 (2)0.07535 (18)0.36796 (13)0.0403 (5)
C140.5994 (2)−0.00856 (19)0.36226 (15)0.0455 (6)
C150.6483 (2)−0.1573 (2)0.33914 (17)0.0538 (7)
C160.7957 (3)−0.1685 (2)0.26744 (17)0.0570 (5)
C170.9388 (2)−0.11592 (19)0.30923 (16)0.0475 (6)
C180.8500 (3)−0.3269 (2)0.2591 (2)0.0702 (9)
C190.7493 (3)−0.0761 (2)0.16615 (17)0.0570 (5)
O40.0402 (4)0.1650 (4)0.0951 (3)0.1652 (16)
C200.1432 (4)0.2327 (4)0.1086 (2)0.0875 (11)
C210.3163 (5)0.1707 (5)0.1206 (4)0.149 (2)
C220.1030 (5)0.3830 (4)0.1273 (4)0.142 (2)
H20.747900.277400.199500.0580*
H2A1.149600.314900.439000.0680*
H2B1.234200.196200.391200.0680*
H30.630400.458600.075200.0650*
H50.321800.621500.270500.0660*
H60.441100.437800.395300.0570*
H7A0.182300.727800.125800.1420*
H7B0.240600.832100.031800.1420*
H7C0.310600.829100.135800.1420*
H80.613500.212000.452500.0470*
H15A0.55440−0.183500.310900.0650*
H15B0.67530−0.227100.400400.0650*
H17A0.98780−0.191300.363100.0570*
H17B1.02270−0.100000.258100.0570*
H18A0.75920−0.363300.236800.1050*
H18B0.88460−0.384300.322600.1050*
H18C0.94030−0.332600.212700.1050*
H19A0.714300.023000.171700.0850*
H19B0.66090−0.111400.140300.0850*
H19C0.84340−0.081500.122400.0850*
H21A0.351500.175900.184700.2240*
H21B0.380700.224100.070600.2240*
H21C0.331300.070900.114400.2240*
H22A0.158800.447500.079100.2140*
H22B0.138500.383600.192300.2140*
H22C−0.014100.414500.122600.2140*
U11U22U33U12U13U23
O10.0853 (12)0.0744 (11)0.0695 (11)0.0109 (9)−0.0079 (9)−0.0055 (9)
O20.0325 (6)0.0517 (7)0.0730 (9)−0.0094 (5)0.0028 (6)−0.0355 (7)
O30.0363 (7)0.0646 (9)0.0955 (12)−0.0134 (6)0.0069 (7)−0.0313 (8)
N10.0476 (10)0.0739 (12)0.0915 (14)−0.0128 (9)0.0111 (9)−0.0534 (11)
N20.0338 (8)0.0609 (10)0.0875 (13)−0.0101 (7)−0.0002 (8)−0.0433 (9)
C10.0310 (8)0.0410 (9)0.0535 (11)−0.0093 (7)0.0008 (7)−0.0203 (8)
C20.0443 (10)0.0474 (10)0.0576 (12)−0.0066 (8)0.0043 (9)−0.0224 (9)
C30.0581 (12)0.0571 (11)0.0512 (12)−0.0099 (10)0.0041 (10)−0.0193 (9)
C40.0499 (11)0.0530 (11)0.0580 (13)−0.0082 (9)−0.0084 (10)−0.0128 (9)
C50.0408 (10)0.0538 (11)0.0708 (14)0.0020 (8)−0.0011 (9)−0.0216 (10)
C60.0367 (9)0.0521 (10)0.0557 (12)−0.0056 (8)0.0043 (8)−0.0189 (9)
C70.093 (2)0.0738 (17)0.101 (2)0.0192 (15)−0.0154 (17)−0.0002 (15)
C80.0314 (8)0.0416 (9)0.0480 (10)−0.0077 (7)0.0039 (7)−0.0184 (7)
C90.0351 (7)0.0473 (7)0.0538 (8)−0.0064 (5)0.0003 (6)−0.0222 (6)
C100.0381 (9)0.0428 (9)0.0505 (10)−0.0070 (7)−0.0030 (8)−0.0214 (8)
C110.0351 (7)0.0473 (7)0.0538 (8)−0.0064 (5)0.0003 (6)−0.0222 (6)
C120.0355 (9)0.0407 (9)0.0504 (10)−0.0082 (7)−0.0015 (8)−0.0172 (8)
C130.0350 (9)0.0401 (9)0.0484 (10)−0.0073 (7)−0.0005 (7)−0.0142 (7)
C140.0388 (10)0.0458 (9)0.0553 (11)−0.0118 (8)0.0007 (8)−0.0145 (8)
C150.0479 (11)0.0469 (10)0.0738 (14)−0.0187 (8)0.0022 (10)−0.0208 (9)
C160.0577 (9)0.0558 (8)0.0649 (9)−0.0136 (7)−0.0035 (7)−0.0248 (7)
C170.0408 (10)0.0410 (9)0.0656 (13)−0.0045 (7)−0.0014 (9)−0.0233 (9)
C180.0664 (14)0.0530 (12)0.1049 (19)−0.0192 (10)0.0059 (13)−0.0410 (13)
C190.0577 (9)0.0558 (8)0.0649 (9)−0.0136 (7)−0.0035 (7)−0.0248 (7)
O40.118 (2)0.219 (3)0.206 (3)−0.089 (2)0.007 (2)−0.104 (3)
C200.0769 (19)0.110 (2)0.090 (2)−0.0446 (17)0.0029 (15)−0.0312 (17)
C210.092 (3)0.125 (3)0.237 (6)−0.014 (2)−0.018 (3)−0.049 (4)
C220.115 (3)0.115 (3)0.199 (5)−0.032 (2)0.019 (3)−0.031 (3)
O1—C41.372 (3)C16—C181.531 (3)
O1—C71.397 (4)C2—H20.9300
O2—C101.371 (2)C3—H30.9300
O2—C121.373 (2)C5—H50.9300
O3—C141.215 (2)C6—H60.9300
O4—C201.187 (5)C7—H7B0.9600
N1—C111.144 (3)C7—H7C0.9600
N2—C101.335 (2)C7—H7A0.9600
N2—H2B0.8600C8—H80.9800
N2—H2A0.8600C15—H15B0.9700
C1—C21.392 (3)C15—H15A0.9700
C1—C81.521 (3)C17—H17A0.9700
C1—C61.379 (3)C17—H17B0.9700
C2—C31.368 (3)C18—H18B0.9600
C3—C41.383 (3)C18—H18C0.9600
C4—C51.376 (3)C18—H18A0.9600
C5—C61.387 (3)C19—H19B0.9600
C8—C91.522 (2)C19—H19C0.9600
C8—C131.501 (2)C19—H19A0.9600
C9—C101.353 (2)C20—C211.450 (5)
C9—C111.405 (3)C20—C221.492 (5)
C12—C131.333 (2)C21—H21A0.9600
C12—C171.493 (3)C21—H21B0.9600
C13—C141.468 (2)C21—H21C0.9600
C14—C151.507 (3)C22—H22A0.9600
C15—C161.533 (3)C22—H22B0.9600
C16—C191.518 (3)C22—H22C0.9600
C16—C171.530 (3)
C4—O1—C7119.00 (19)C1—C6—H6119.00
C10—O2—C12118.71 (13)C5—C6—H6119.00
C10—N2—H2B120.00O1—C7—H7A109.00
H2A—N2—H2B120.00O1—C7—H7B109.00
C10—N2—H2A120.00O1—C7—H7C110.00
C6—C1—C8120.86 (17)H7A—C7—H7B109.00
C2—C1—C6117.49 (17)H7A—C7—H7C110.00
C2—C1—C8121.58 (16)H7B—C7—H7C109.00
C1—C2—C3121.33 (18)C1—C8—H8108.00
C2—C3—C4120.4 (2)C9—C8—H8108.00
O1—C4—C3115.55 (19)C13—C8—H8109.00
C3—C4—C5119.50 (19)C14—C15—H15A109.00
O1—C4—C5124.96 (19)C14—C15—H15B109.00
C4—C5—C6119.47 (18)C16—C15—H15A109.00
C1—C6—C5121.83 (18)C16—C15—H15B109.00
C1—C8—C13112.40 (15)H15A—C15—H15B108.00
C1—C8—C9110.68 (14)C12—C17—H17A109.00
C9—C8—C13108.21 (14)C12—C17—H17B109.00
C8—C9—C10122.50 (16)C16—C17—H17A109.00
C8—C9—C11118.28 (15)C16—C17—H17B109.00
C10—C9—C11119.04 (16)H17A—C17—H17B108.00
N2—C10—C9128.41 (18)C16—C18—H18A109.00
O2—C10—N2110.29 (15)C16—C18—H18B110.00
O2—C10—C9121.30 (15)C16—C18—H18C110.00
N1—C11—C9179.09 (19)H18A—C18—H18B109.00
O2—C12—C13123.20 (16)H18A—C18—H18C109.00
O2—C12—C17110.77 (14)H18B—C18—H18C109.00
C13—C12—C17126.03 (16)C16—C19—H19A109.00
C12—C13—C14118.86 (16)C16—C19—H19B109.00
C8—C13—C14118.84 (15)C16—C19—H19C109.00
C8—C13—C12122.28 (15)H19A—C19—H19B109.00
O3—C14—C13121.03 (17)H19A—C19—H19C109.00
O3—C14—C15121.68 (16)H19B—C19—H19C109.00
C13—C14—C15117.26 (15)O4—C20—C21122.9 (4)
C14—C15—C16113.98 (16)O4—C20—C22122.7 (4)
C17—C16—C18108.51 (18)C21—C20—C22114.0 (3)
C17—C16—C19110.37 (18)C20—C21—H21A109.00
C18—C16—C19109.63 (19)C20—C21—H21B109.00
C15—C16—C19110.12 (19)C20—C21—H21C109.00
C15—C16—C17108.13 (17)H21A—C21—H21B109.00
C15—C16—C18110.05 (18)H21A—C21—H21C109.00
C12—C17—C16112.99 (15)H21B—C21—H21C109.00
C1—C2—H2119.00C20—C22—H22A109.00
C3—C2—H2119.00C20—C22—H22B109.00
C2—C3—H3120.00C20—C22—H22C109.00
C4—C3—H3120.00H22A—C22—H22B109.00
C4—C5—H5120.00H22A—C22—H22C110.00
C6—C5—H5120.00H22B—C22—H22C109.00
C7—O1—C4—C3−180.0 (2)C1—C8—C13—C14−74.3 (2)
C7—O1—C4—C50.2 (3)C9—C8—C13—C12−18.5 (2)
C12—O2—C10—N2172.48 (16)C9—C8—C13—C14163.20 (16)
C12—O2—C10—C9−7.6 (3)C8—C9—C10—O2−8.6 (3)
C10—O2—C12—C139.5 (3)C8—C9—C10—N2171.34 (19)
C10—O2—C12—C17−171.11 (16)C11—C9—C10—O2176.45 (17)
C6—C1—C2—C3−0.2 (3)C11—C9—C10—N2−3.6 (3)
C8—C1—C2—C3−177.04 (18)O2—C12—C13—C85.1 (3)
C2—C1—C6—C50.2 (3)O2—C12—C13—C14−176.54 (17)
C8—C1—C6—C5177.02 (16)C17—C12—C13—C8−174.16 (18)
C2—C1—C8—C979.6 (2)C17—C12—C13—C144.2 (3)
C2—C1—C8—C13−41.5 (2)O2—C12—C17—C16−161.46 (16)
C6—C1—C8—C9−97.08 (19)C13—C12—C17—C1617.9 (3)
C6—C1—C8—C13141.80 (17)C8—C13—C14—O30.7 (3)
C1—C2—C3—C40.2 (3)C8—C13—C14—C15−177.12 (17)
C2—C3—C4—O1−180.0 (2)C12—C13—C14—O3−177.70 (19)
C2—C3—C4—C5−0.1 (3)C12—C13—C14—C154.5 (3)
O1—C4—C5—C6179.9 (2)O3—C14—C15—C16147.2 (2)
C3—C4—C5—C60.1 (3)C13—C14—C15—C16−35.0 (3)
C4—C5—C6—C1−0.1 (3)C14—C15—C16—C1754.3 (2)
C1—C8—C9—C10−103.3 (2)C14—C15—C16—C18172.66 (18)
C1—C8—C9—C1171.7 (2)C14—C15—C16—C19−66.4 (2)
C13—C8—C9—C1020.3 (2)C15—C16—C17—C12−45.0 (2)
C13—C8—C9—C11−164.75 (16)C18—C16—C17—C12−164.36 (18)
C1—C8—C13—C12104.1 (2)C19—C16—C17—C1275.5 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···N1i0.862.303.142 (3)168
N2—H2B···O3ii0.862.193.029 (2)165
C6—H6···N1iii0.932.513.258 (3)137
C18—H18A···Cg2iv0.962.773.677 (2)158
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the O2/C8–C10/C12/C13) 4H-pyran ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯N1i 0.862.303.142 (3)168
N2—H2B⋯O3ii 0.862.193.029 (2)165
C6—H6⋯N1iii 0.932.513.258 (3)137
C18—H18ACg2iv 0.962.773.677 (2)158

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  9 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Concomitant activation of caspase-9 and down-regulation of IAP proteins as a mechanism of apoptotic death in HepG2, T47D and HCT-116 cells upon exposure to a derivative from 4-aryl-4H-chromenes family.

Authors:  Majid Mahdavi; Jamshid Davoodi; Mohammad Reza Zali; Alireza Foroumadi
Journal:  Biomed Pharmacother       Date:  2011-04-08       Impact factor: 6.529

3.  Coumarins derivatives as dual inhibitors of acetylcholinesterase and monoamine oxidase.

Authors:  C Brühlmann; F Ooms; P A Carrupt; B Testa; M Catto; F Leonetti; C Altomare; A Carotti
Journal:  J Med Chem       Date:  2001-09-13       Impact factor: 7.446

4.  Synthesis of 4H-chromene, coumarin, 12H-chromeno[2,3-d]pyrimidine derivatives and some of their antimicrobial and cytotoxicity activities.

Authors:  Nermien M Sabry; Hany M Mohamed; Essam Shawky A E H Khattab; Shymaa S Motlaq; Ahmed M El-Agrody
Journal:  Eur J Med Chem       Date:  2010-12-21       Impact factor: 6.514

5.  Discovery of 4-aryl-4H-chromenes as a new series of apoptosis inducers using a cell- and caspase-based high-throughput screening assay. 3. Structure-activity relationships of fused rings at the 7,8-positions.

Authors:  William Kemnitzer; John Drewe; Songchun Jiang; Hong Zhang; Jianghong Zhao; Candace Crogan-Grundy; Lifen Xu; Serge Lamothe; Henriette Gourdeau; Réal Denis; Ben Tseng; Shailaja Kasibhatla; Sui Xiong Cai
Journal:  J Med Chem       Date:  2007-05-11       Impact factor: 7.446

6.  Discovery of 4-aryl-4H-chromenes as a new series of apoptosis inducers using a cell- and caspase-based high throughput screening assay. 4. Structure-activity relationships of N-alkyl substituted pyrrole fused at the 7,8-positions.

Authors:  William Kemnitzer; John Drewe; Songchun Jiang; Hong Zhang; Candace Crogan-Grundy; Denis Labreque; Monica Bubenick; Giorgio Attardo; Real Denis; Serge Lamothe; Henriette Gourdeau; Ben Tseng; Shailaja Kasibhatla; Sui Xiong Cai
Journal:  J Med Chem       Date:  2008-01-16       Impact factor: 7.446

7.  Antivascular and antitumor evaluation of 2-amino-4-(3-bromo-4,5-dimethoxy-phenyl)-3-cyano-4H-chromenes, a novel series of anticancer agents.

Authors:  Henriette Gourdeau; Lorraine Leblond; Bettina Hamelin; Clemence Desputeau; Kelly Dong; Irenej Kianicka; Dominique Custeau; Chantal Boudreau; Lilianne Geerts; Sui-Xiong Cai; John Drewe; Denis Labrecque; Shailaja Kasibhatla; Ben Tseng
Journal:  Mol Cancer Ther       Date:  2004-11       Impact factor: 6.261

8.  2-Amino-4-(4-chloro-phen-yl)-7,7-dimethyl-5-oxo-5,6,7,8-tetra-hydro-4H-chromene-3-carbonitrile propan-2-one monosolvate.

Authors:  Shaaban K Mohamed; Mehmet Akkurt; Muhammad N Tahir; Antar A Abdelhamid; Mustafa R Albayati
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-31

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total

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