Literature DB >> 22798866

Phenazin-5-ium bromide.

Gong-Xiao Zhang1, Ping Li, Jian Dong, Hong-Yu Chen.   

Abstract

In the title compound, C(12)H(9)N(2) (+)·Br(-), the protonated tricyclic ring system is slightly twisted, with a dihedral angle of 3.9 (1)° between the two outer benzene rings. In the crystal, N-H⋯Br and C-H⋯Br hydrogen bonds link two cations and two bromide anions into centrosymmetric assemblies, which are further packed into stacks along [010] via π-π inter-actions between the aromatic rings [centroid-centroid distance = 3.725 (4) Å].

Entities:  

Year:  2012        PMID: 22798866      PMCID: PMC3394001          DOI: 10.1107/S1600536812027869

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of phenazines, see: Laursen & Nielsen (2004 ▶); Uchida & Kimura (1984 ▶). For related structures, see: Braga et al. (2010 ▶); Zhang et al. (2012 ▶).

Experimental

Crystal data

C12H9N2 +·Br M = 261.12 Triclinic, a = 5.639 (5) Å b = 7.958 (5) Å c = 12.149 (5) Å α = 73.284 (5)° β = 86.896 (5)° γ = 88.360 (5)° V = 521.3 (6) Å3 Z = 2 Mo Kα radiation μ = 3.91 mm−1 T = 293 K 0.18 × 0.16 × 0.15 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.541, T max = 0.556 3029 measured reflections 2085 independent reflections 1840 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.105 S = 1.08 2085 reflections 137 parameters H-atom parameters constrained Δρmax = 0.81 e Å−3 Δρmin = −0.65 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812027869/cv5312sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812027869/cv5312Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812027869/cv5312Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H9N2+·BrZ = 2
Mr = 261.12F(000) = 260
Triclinic, P1Dx = 1.663 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71069 Å
a = 5.639 (5) ÅCell parameters from 1973 reflections
b = 7.958 (5) Åθ = 2.7–28.3°
c = 12.149 (5) ŵ = 3.91 mm1
α = 73.284 (5)°T = 293 K
β = 86.896 (5)°Prism, black
γ = 88.360 (5)°0.18 × 0.16 × 0.15 mm
V = 521.3 (6) Å3
Bruker SMART APEXII CCD area-detector diffractometer2085 independent reflections
Radiation source: fine-focus sealed tube1840 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
phi and ω scansθmax = 26.4°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −4→7
Tmin = 0.541, Tmax = 0.556k = −9→9
3029 measured reflectionsl = −15→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.105w = 1/[σ2(Fo2) + (0.062P)2 + 0.0297P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
2085 reflectionsΔρmax = 0.81 e Å3
137 parametersΔρmin = −0.65 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.028 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br1−0.54425 (5)−0.08849 (4)0.30612 (2)0.04706 (19)
C10.2320 (6)0.3452 (4)−0.0468 (3)0.0430 (7)
H1A0.37400.4032−0.07320.052*
C20.1020 (6)0.2915 (5)−0.1191 (3)0.0494 (8)
H2A0.15590.3123−0.19550.059*
C3−0.1152 (6)0.2040 (5)−0.0819 (3)0.0492 (8)
H3A−0.20330.1706−0.13450.059*
C4−0.1977 (6)0.1679 (4)0.0300 (3)0.0435 (7)
H4A−0.34010.10950.05430.052*
C5−0.0634 (5)0.2204 (4)0.1074 (2)0.0354 (6)
C60.1524 (5)0.3133 (4)0.0701 (2)0.0353 (6)
C70.3209 (6)0.4035 (5)0.3284 (3)0.0481 (8)
H7A0.45640.47030.30290.058*
C80.2429 (7)0.3683 (5)0.4392 (3)0.0544 (9)
H8A0.32570.41050.48970.065*
C90.0368 (7)0.2680 (5)0.4799 (3)0.0525 (9)
H9A−0.01180.24420.55710.063*
C10−0.0911 (5)0.2059 (4)0.4102 (3)0.0433 (7)
H10A−0.22700.14080.43820.052*
C11−0.0137 (5)0.2419 (4)0.2938 (2)0.0351 (6)
C120.1979 (5)0.3395 (4)0.2505 (2)0.0363 (6)
N10.2781 (4)0.3709 (3)0.1416 (2)0.0384 (6)
N2−0.1337 (4)0.1862 (3)0.2191 (2)0.0364 (5)
H2B−0.26030.12640.24350.044*
U11U22U33U12U13U23
Br10.0445 (3)0.0526 (3)0.0440 (2)−0.01652 (15)0.00696 (14)−0.01376 (15)
C10.0355 (16)0.0472 (18)0.0418 (16)0.0064 (13)0.0064 (13)−0.0076 (13)
C20.055 (2)0.051 (2)0.0394 (17)0.0125 (16)0.0031 (15)−0.0116 (14)
C30.055 (2)0.050 (2)0.0484 (18)0.0097 (16)−0.0095 (15)−0.0221 (15)
C40.0348 (16)0.0428 (17)0.0528 (18)0.0010 (13)−0.0036 (13)−0.0136 (14)
C50.0311 (14)0.0353 (15)0.0385 (15)0.0048 (12)0.0017 (11)−0.0096 (11)
C60.0279 (14)0.0345 (15)0.0401 (15)0.0040 (12)0.0015 (11)−0.0062 (12)
C70.0362 (18)0.0523 (19)0.0532 (19)−0.0104 (15)0.0010 (14)−0.0106 (15)
C80.058 (2)0.062 (2)0.0476 (19)−0.0110 (18)−0.0046 (15)−0.0205 (16)
C90.057 (2)0.060 (2)0.0393 (17)−0.0022 (17)0.0052 (15)−0.0127 (15)
C100.0381 (17)0.0447 (18)0.0437 (17)−0.0050 (14)0.0076 (13)−0.0087 (13)
C110.0306 (14)0.0340 (15)0.0383 (15)0.0006 (11)0.0024 (11)−0.0072 (11)
C120.0295 (15)0.0368 (15)0.0389 (15)0.0003 (12)0.0014 (11)−0.0056 (12)
N10.0283 (12)0.0398 (14)0.0426 (13)−0.0009 (10)0.0043 (10)−0.0056 (10)
N20.0263 (12)0.0381 (13)0.0430 (13)−0.0042 (10)0.0053 (10)−0.0096 (10)
C1—C21.339 (5)C7—C121.417 (5)
C1—C61.418 (4)C7—H7A0.9300
C1—H1A0.9300C8—C91.413 (5)
C2—C31.413 (5)C8—H8A0.9300
C2—H2A0.9300C9—C101.344 (5)
C3—C41.364 (4)C9—H9A0.9300
C3—H3A0.9300C10—C111.407 (4)
C4—C51.397 (5)C10—H10A0.9300
C4—H4A0.9300C11—N21.339 (4)
C5—N21.345 (4)C11—C121.433 (4)
C5—C61.426 (4)C12—N11.329 (4)
C6—N11.336 (4)N2—H2B0.8600
C7—C81.345 (5)
C2—C1—C6119.8 (3)C12—C7—H7A119.8
C2—C1—H1A120.1C7—C8—C9120.8 (3)
C6—C1—H1A120.1C7—C8—H8A119.6
C1—C2—C3121.5 (3)C9—C8—H8A119.6
C1—C2—H2A119.2C10—C9—C8122.0 (3)
C3—C2—H2A119.2C10—C9—H9A119.0
C4—C3—C2121.0 (3)C8—C9—H9A119.0
C4—C3—H3A119.5C9—C10—C11118.2 (3)
C2—C3—H3A119.5C9—C10—H10A120.9
C3—C4—C5118.6 (3)C11—C10—H10A120.9
C3—C4—H4A120.7N2—C11—C10121.6 (3)
C5—C4—H4A120.7N2—C11—C12117.3 (3)
N2—C5—C4121.3 (3)C10—C11—C12121.2 (3)
N2—C5—C6117.8 (3)N1—C12—C7120.4 (3)
C4—C5—C6120.9 (3)N1—C12—C11122.3 (3)
N1—C6—C1120.0 (3)C7—C12—C11117.4 (3)
N1—C6—C5121.8 (3)C12—N1—C6118.4 (2)
C1—C6—C5118.2 (3)C11—N2—C5122.4 (2)
C8—C7—C12120.4 (3)C11—N2—H2B118.8
C8—C7—H7A119.8C5—N2—H2B118.8
C6—C1—C2—C30.4 (5)C9—C10—C11—C121.1 (5)
C1—C2—C3—C4−1.4 (5)C8—C7—C12—N1−178.4 (3)
C2—C3—C4—C50.5 (5)C8—C7—C12—C111.9 (5)
C3—C4—C5—N2−179.0 (3)N2—C11—C12—N1−1.7 (4)
C3—C4—C5—C61.4 (5)C10—C11—C12—N1178.0 (3)
C2—C1—C6—N1−178.1 (3)N2—C11—C12—C7178.0 (3)
C2—C1—C6—C51.4 (5)C10—C11—C12—C7−2.3 (4)
N2—C5—C6—N1−2.4 (4)C7—C12—N1—C6−177.8 (3)
C4—C5—C6—N1177.2 (3)C11—C12—N1—C61.9 (4)
N2—C5—C6—C1178.1 (3)C1—C6—N1—C12179.7 (3)
C4—C5—C6—C1−2.3 (4)C5—C6—N1—C120.1 (4)
C12—C7—C8—C9−0.4 (6)C10—C11—N2—C5179.5 (3)
C7—C8—C9—C10−0.9 (6)C12—C11—N2—C5−0.7 (4)
C8—C9—C10—C110.5 (6)C4—C5—N2—C11−177.0 (3)
C9—C10—C11—N2−179.2 (3)C6—C5—N2—C112.7 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2B···Br10.862.313.155 (4)167
C3—H3A···Br1i0.932.823.750 (5)176
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2B⋯Br10.862.313.155 (4)167
C3—H3A⋯Br1i 0.932.823.750 (5)176

Symmetry code: (i) .

  3 in total

Review 1.  Phenazine natural products: biosynthesis, synthetic analogues, and biological activity.

Authors:  Jane Buus Laursen; John Nielsen
Journal:  Chem Rev       Date:  2004-03       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Phenazinium methyl sulfate.

Authors:  Nai-Qiang Zhang; Ping Li; Jian Dong; Hong-Yu Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13
  3 in total
  1 in total

1.  Phenazin-5-ium hydrogen sulfate monohydrate.

Authors:  Joseph Degeorge; Christopher P Landee; Mark M Turnbull
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-02
  1 in total

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