Literature DB >> 22798847

2-Amino-4-(4-meth-oxy-phen-yl)-5-oxo-5,6,7,8-tetra-hydro-4H-chromene-3-carbonitrile 1,4-dioxane hemisolvate.

Shaaban K Mohamed, Mehmet Akkurt, Muhammad N Tahir, Antar A Abdelhamid, Sabry H H Younes.   

Abstract

In the crystal structure of the title compound, C(17)H(16)N(2)O(3)·0.5C(4)H(8)O(2), pairs of N-H⋯N hydrogen bonds link mol-ecules into dimers with R(2) (2)(12) motifs, which are connected by N-H⋯O hydrogen bonds, forming a supra-molecular array in the ab plane. The 1,4-dioxane ring, which lies about an inversion center, adopts a chair conformation.

Entities:  

Year:  2012        PMID: 22798847      PMCID: PMC3393982          DOI: 10.1107/S1600536812027729

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyran and fused-pyran mol­ecules, see: Bargagna et al. (1992 ▶); Symeonidis et al. (2009 ▶); Narender & Gupta (2009 ▶); Alvey et al. (2009 ▶); Gorlitzer et al. (1984 ▶); Han et al. (2008 ▶); Martinez & Marco (1997 ▶); Smith et al. (1998 ▶); Taylor et al. (1998 ▶). For related structures, see: Gourdeau et al. (2004 ▶); Foroumadi et al. (2007 ▶); Mohamed et al. (2012 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C17H16N2O3·0.5C4H8O2 M = 340.37 Triclinic, a = 8.0876 (4) Å b = 9.2013 (4) Å c = 12.1613 (6) Å α = 94.376 (2)° β = 102.827 (1)° γ = 95.972 (2)° V = 873.01 (7) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.35 × 0.25 × 0.22 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.973, T max = 0.980 14186 measured reflections 4108 independent reflections 3134 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.194 S = 1.07 4108 reflections 227 parameters H-atom parameters constrained Δρmax = 0.60 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812027729/tk5115sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812027729/tk5115Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812027729/tk5115Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H16N2O3·0.5C4H8O2Z = 2
Mr = 340.37F(000) = 360
Triclinic, P1Dx = 1.295 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.0876 (4) ÅCell parameters from 420 reflections
b = 9.2013 (4) Åθ = 3.6–22.5°
c = 12.1613 (6) ŵ = 0.09 mm1
α = 94.376 (2)°T = 293 K
β = 102.827 (1)°Prism, light-yellow
γ = 95.972 (2)°0.35 × 0.25 × 0.22 mm
V = 873.01 (7) Å3
Bruker Kappa APEXII CCD diffractometer4108 independent reflections
Radiation source: fine-focus sealed tube3134 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
Detector resolution: 0.81 pixels mm-1θmax = 27.9°, θmin = 1.7°
ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −12→8
Tmin = 0.973, Tmax = 0.980l = −16→15
14186 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.194H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0997P)2 + 0.273P] where P = (Fo2 + 2Fc2)/3
4108 reflections(Δ/σ)max < 0.001
227 parametersΔρmax = 0.60 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.1813 (2)0.42680 (19)0.00491 (15)0.0760 (6)
O20.93204 (16)0.95097 (14)0.33842 (12)0.0512 (4)
O30.36871 (18)0.99158 (15)0.37001 (14)0.0595 (5)
N11.0877 (2)0.77420 (19)0.39337 (15)0.0563 (6)
N20.8057 (3)0.5088 (2)0.49805 (19)0.0712 (7)
C10.5009 (2)0.70436 (17)0.26984 (14)0.0389 (5)
C20.4984 (3)0.7302 (2)0.15944 (17)0.0531 (6)
C30.3939 (3)0.6405 (2)0.06812 (18)0.0583 (7)
C40.2893 (3)0.5219 (2)0.08782 (18)0.0537 (6)
C50.2917 (3)0.4941 (2)0.19793 (19)0.0563 (7)
C60.3951 (2)0.58441 (19)0.28771 (17)0.0476 (6)
C70.1568 (4)0.4634 (3)−0.1082 (2)0.0809 (9)
C80.6180 (2)0.79962 (17)0.37058 (14)0.0387 (5)
C90.7912 (2)0.74660 (18)0.40311 (14)0.0405 (5)
C100.9333 (2)0.81758 (19)0.38054 (14)0.0420 (5)
C110.8019 (2)0.6148 (2)0.45477 (17)0.0487 (6)
C120.7895 (2)1.02140 (18)0.33096 (14)0.0422 (5)
C130.6429 (2)0.95783 (18)0.34927 (14)0.0403 (5)
C140.5022 (2)1.04491 (19)0.35100 (15)0.0461 (6)
C150.5308 (3)1.2042 (2)0.3328 (2)0.0634 (8)
C160.6528 (3)1.2323 (2)0.2563 (2)0.0660 (8)
C170.8203 (3)1.1737 (2)0.29963 (18)0.0537 (6)
O40.8992 (4)0.9746 (4)1.0758 (2)0.1475 (16)
C180.8279 (5)0.9756 (5)0.9615 (4)0.1243 (19)
C190.9322 (6)1.0707 (6)0.9113 (4)0.138 (2)
H1A1.106200.691400.419000.0680*
H1B1.169000.829000.376100.0680*
H20.568700.810000.145700.0640*
H30.394500.66020−0.005700.0700*
H50.222700.413400.211700.0680*
H60.393900.564700.361400.0570*
H7A0.118600.55860−0.112400.1210*
H7B0.072400.39170−0.157100.1210*
H7C0.262700.46480−0.131500.1210*
H80.564800.793800.435300.0460*
H15A0.576601.261700.405500.0760*
H15B0.422101.236500.299300.0760*
H16A0.600401.185700.180500.0790*
H16B0.674201.337100.251700.0790*
H17A0.885301.173800.241500.0640*
H17B0.886701.237000.365400.0640*
H18A0.715501.007800.951700.1500*
H18B0.814500.876900.923900.1500*
H19A0.941601.170200.946800.1660*
H19B0.879701.070000.831400.1660*
U11U22U33U12U13U23
O10.0761 (11)0.0640 (10)0.0702 (10)−0.0133 (8)−0.0058 (8)−0.0056 (8)
O20.0475 (7)0.0467 (7)0.0657 (8)0.0030 (5)0.0229 (6)0.0207 (6)
O30.0480 (8)0.0506 (8)0.0832 (10)0.0060 (6)0.0217 (7)0.0084 (7)
N10.0429 (9)0.0552 (10)0.0748 (11)0.0057 (7)0.0169 (8)0.0229 (8)
N20.0600 (11)0.0595 (11)0.1025 (16)0.0096 (8)0.0244 (10)0.0413 (11)
C10.0359 (8)0.0347 (8)0.0472 (9)0.0047 (6)0.0112 (7)0.0063 (6)
C20.0594 (12)0.0473 (10)0.0514 (10)−0.0082 (8)0.0170 (9)0.0062 (8)
C30.0649 (13)0.0591 (12)0.0475 (10)−0.0043 (10)0.0117 (9)0.0042 (9)
C40.0487 (11)0.0441 (10)0.0612 (12)0.0022 (8)0.0016 (9)−0.0009 (8)
C50.0505 (11)0.0417 (10)0.0702 (13)−0.0070 (8)0.0040 (9)0.0124 (9)
C60.0454 (10)0.0423 (9)0.0543 (10)0.0002 (7)0.0091 (8)0.0148 (8)
C70.0762 (17)0.0896 (18)0.0618 (14)0.0016 (13)−0.0056 (12)−0.0107 (13)
C80.0407 (8)0.0354 (8)0.0418 (8)0.0004 (6)0.0145 (7)0.0071 (6)
C90.0423 (9)0.0372 (8)0.0413 (8)0.0004 (6)0.0085 (7)0.0087 (6)
C100.0443 (9)0.0398 (8)0.0414 (8)0.0015 (7)0.0092 (7)0.0082 (7)
C110.0413 (9)0.0462 (10)0.0586 (11)0.0016 (7)0.0104 (8)0.0144 (8)
C120.0499 (10)0.0354 (8)0.0420 (9)0.0005 (7)0.0133 (7)0.0070 (7)
C130.0460 (9)0.0341 (8)0.0407 (8)0.0008 (7)0.0114 (7)0.0049 (6)
C140.0494 (10)0.0393 (9)0.0481 (10)0.0031 (7)0.0091 (8)0.0041 (7)
C150.0664 (13)0.0403 (10)0.0882 (16)0.0107 (9)0.0234 (12)0.0150 (10)
C160.0820 (16)0.0462 (11)0.0748 (14)0.0089 (10)0.0219 (12)0.0245 (10)
C170.0659 (12)0.0391 (9)0.0605 (11)−0.0019 (8)0.0251 (10)0.0135 (8)
O40.125 (2)0.236 (4)0.0879 (17)0.028 (2)0.0352 (16)0.018 (2)
C180.105 (3)0.152 (4)0.107 (3)0.002 (3)0.010 (2)0.020 (3)
C190.114 (3)0.200 (5)0.111 (3)0.038 (3)0.022 (2)0.069 (3)
O1—C41.364 (3)C13—C141.461 (2)
O1—C71.417 (3)C14—C151.501 (3)
O2—C101.366 (2)C15—C161.516 (3)
O2—C121.369 (2)C16—C171.511 (3)
O3—C141.216 (2)C2—H20.9300
O4—C181.383 (5)C3—H30.9300
O4—C19i1.446 (6)C5—H50.9300
N1—C101.330 (2)C6—H60.9300
N2—C111.143 (3)C7—H7C0.9600
N1—H1B0.8600C7—H7A0.9600
N1—H1A0.8600C7—H7B0.9600
C1—C21.377 (3)C8—H80.9800
C1—C81.521 (2)C15—H15B0.9700
C1—C61.386 (2)C15—H15A0.9700
C2—C31.388 (3)C16—H16A0.9700
C3—C41.379 (3)C16—H16B0.9700
C4—C51.379 (3)C17—H17B0.9700
C5—C61.376 (3)C17—H17A0.9700
C8—C131.499 (2)C18—C191.417 (7)
C8—C91.511 (2)C18—H18A0.9700
C9—C101.354 (2)C18—H18B0.9700
C9—C111.410 (3)C19—H19A0.9700
C12—C131.338 (2)C19—H19B0.9700
C12—C171.491 (3)
C4—O1—C7117.78 (19)C2—C3—H3120.00
C10—O2—C12118.91 (14)C6—C5—H5120.00
C18—O4—C19i108.6 (3)C4—C5—H5120.00
H1A—N1—H1B120.00C1—C6—H6120.00
C10—N1—H1B120.00C5—C6—H6120.00
C10—N1—H1A120.00O1—C7—H7A109.00
C2—C1—C6117.77 (17)O1—C7—H7B109.00
C6—C1—C8119.84 (15)H7A—C7—H7B109.00
C2—C1—C8122.37 (15)H7A—C7—H7C109.00
C1—C2—C3121.88 (19)H7B—C7—H7C110.00
C2—C3—C4119.41 (19)O1—C7—H7C109.00
O1—C4—C5116.23 (19)C9—C8—H8108.00
C3—C4—C5119.3 (2)C13—C8—H8108.00
O1—C4—C3124.49 (19)C1—C8—H8108.00
C4—C5—C6120.73 (19)C14—C15—H15B109.00
C1—C6—C5120.93 (18)C16—C15—H15A109.00
C9—C8—C13108.63 (14)C16—C15—H15B109.00
C1—C8—C13112.38 (14)H15A—C15—H15B108.00
C1—C8—C9111.95 (13)C14—C15—H15A109.00
C8—C9—C10122.54 (15)C15—C16—H16B109.00
C10—C9—C11119.42 (16)C17—C16—H16A109.00
C8—C9—C11118.00 (14)C15—C16—H16A109.00
O2—C10—N1110.30 (15)H16A—C16—H16B108.00
N1—C10—C9128.22 (17)C17—C16—H16B109.00
O2—C10—C9121.48 (15)C12—C17—H17A110.00
N2—C11—C9177.6 (2)C12—C17—H17B110.00
O2—C12—C13122.91 (15)C16—C17—H17B110.00
C13—C12—C17125.75 (17)H17A—C17—H17B108.00
O2—C12—C17111.34 (16)C16—C17—H17A110.00
C8—C13—C14118.19 (14)O4—C18—C19110.9 (4)
C8—C13—C12122.27 (15)O4i—C19—C18110.8 (4)
C12—C13—C14119.54 (15)O4—C18—H18A109.00
C13—C14—C15117.57 (16)O4—C18—H18B109.00
O3—C14—C13121.28 (16)C19—C18—H18A109.00
O3—C14—C15121.11 (17)C19—C18—H18B109.00
C14—C15—C16112.24 (17)H18A—C18—H18B108.00
C15—C16—C17111.57 (18)C18—C19—H19A109.00
C12—C17—C16110.51 (18)C18—C19—H19B109.00
C1—C2—H2119.00H19A—C19—H19B108.00
C3—C2—H2119.00O4i—C19—H19A109.00
C4—C3—H3120.00O4i—C19—H19B110.00
C7—O1—C4—C3−9.3 (3)C1—C8—C9—C10105.99 (18)
C7—O1—C4—C5171.1 (2)C1—C8—C9—C11−71.4 (2)
C10—O2—C12—C17171.59 (15)C9—C8—C13—C14−161.46 (15)
C12—O2—C10—N1−172.95 (15)C1—C8—C13—C1474.12 (19)
C10—O2—C12—C13−8.8 (2)C9—C8—C13—C1217.3 (2)
C12—O2—C10—C97.4 (2)C11—C9—C10—N15.4 (3)
C18i—O4i—C19—C18−58.0 (5)C8—C9—C10—O27.6 (3)
C19i—O4—C18—C19−58.0 (5)C8—C9—C10—N1−172.00 (17)
C8—C1—C2—C3178.46 (19)C11—C9—C10—O2−175.05 (16)
C8—C1—C6—C5−178.09 (17)C17—C12—C13—C8174.55 (17)
C2—C1—C6—C50.2 (3)C17—C12—C13—C14−6.7 (3)
C2—C1—C8—C9−87.6 (2)O2—C12—C17—C16162.26 (16)
C2—C1—C8—C1334.9 (2)C13—C12—C17—C16−17.3 (3)
C6—C1—C8—C990.63 (19)O2—C12—C13—C14173.82 (15)
C6—C1—C8—C13−146.80 (16)O2—C12—C13—C8−5.0 (3)
C6—C1—C2—C30.2 (3)C12—C13—C14—O3−178.26 (18)
C1—C2—C3—C40.0 (3)C8—C13—C14—O30.6 (3)
C2—C3—C4—C5−0.5 (3)C12—C13—C14—C15−0.5 (3)
C2—C3—C4—O1179.8 (2)C8—C13—C14—C15178.31 (16)
O1—C4—C5—C6−179.37 (19)O3—C14—C15—C16−151.3 (2)
C3—C4—C5—C61.0 (3)C13—C14—C15—C1631.0 (3)
C4—C5—C6—C1−0.8 (3)C14—C15—C16—C17−54.6 (2)
C13—C8—C9—C11163.92 (15)C15—C16—C17—C1246.9 (2)
C1—C8—C13—C12−107.09 (18)O4—C18—C19—O4i59.3 (5)
C13—C8—C9—C10−18.7 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N2ii0.862.273.123 (3)171
N1—H1B···O3iii0.862.102.945 (2)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯N2i 0.862.273.123 (3)171
N1—H1B⋯O3ii 0.862.102.945 (2)167

Symmetry codes: (i) ; (ii) .

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