Literature DB >> 22798827

(E)-1-(2-Nitro-benzyl-idene)-4-phenyl-thio-semicarbazide.

Samaneh Feizi, Ali Hossein Rezayan, Soroush Sardari, Behrouz Notash.   

Abstract

In the title mol-ecule, C(14)H(12)N(4)O(2)S, the conformation about the imine bond is trans. The dihedral angle between the two rings is 88.22 (11)°. An intra-molecular N-H⋯N contact occurs. The crystal structure features N-H⋯S and C-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22798827      PMCID: PMC3393962          DOI: 10.1107/S1600536812026803

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to thio­semicarbazone derivatives, see: Shaabani et al. (2011 ▶); Sardari et al. (1999 ▶). For applications of imine bonds in synthesis, see: Plech et al. (2011 ▶); Tada et al. (2011 ▶); Sriram et al. (2007 ▶). For related structures, see: Jian & Li (2006a ▶,b ▶); Fang et al. (2007 ▶).

Experimental

Crystal data

C14H12N4O2S M = 300.35 Triclinic, a = 7.4050 (7) Å b = 8.4239 (8) Å c = 12.2363 (10) Å α = 90.382 (7)° β = 93.974 (7)° γ = 110.004 (8)° V = 715.14 (12) Å3 Z = 2 Mo Kα radiation μ = 0.24 mm−1 T = 298 K 0.38 × 0.35 × 0.32 mm

Data collection

Stoe IPDS II diffractometer Absorption correction: numerical (X-RED and X-SHAPE; Stoe & Cie (2005 ▶) T min = 0.910, T max = 0.930 7967 measured reflections 3832 independent reflections 2715 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.128 S = 1.03 3832 reflections 202 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.23 e Å−3 Data collection: X-AREA (Stoe & Cie, 2005 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812026803/bt5899sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812026803/bt5899Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812026803/bt5899Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12N4O2SZ = 2
Mr = 300.35F(000) = 312
Triclinic, P1Dx = 1.395 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.4050 (7) ÅCell parameters from 7967 reflections
b = 8.4239 (8) Åθ = 2.6–29.2°
c = 12.2363 (10) ŵ = 0.24 mm1
α = 90.382 (7)°T = 298 K
β = 93.974 (7)°Prism, yellow
γ = 110.004 (8)°0.38 × 0.35 × 0.32 mm
V = 715.14 (12) Å3
Stoe IPDS II diffractometer3832 independent reflections
Radiation source: fine-focus sealed tube2715 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.043
Detector resolution: 0.15 mm pixels mm-1θmax = 29.2°, θmin = 2.6°
rotation method scansh = −10→10
Absorption correction: numerical (X-RED and X-SHAPE; Stoe & Cie (2005)k = −11→10
Tmin = 0.910, Tmax = 0.930l = −15→16
7967 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0528P)2 + 0.223P] where P = (Fo2 + 2Fc2)/3
3832 reflections(Δ/σ)max = 0.005
202 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.23 e Å3
Experimental. shape of crystal determined optically
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2544 (3)0.5115 (3)0.51143 (14)0.0381 (4)
C20.2249 (3)0.5628 (3)0.40645 (15)0.0509 (5)
H20.20760.48920.34650.061*
C30.2213 (4)0.7226 (3)0.39147 (18)0.0609 (6)
H30.20070.75750.32120.073*
C40.2482 (4)0.8319 (3)0.48040 (19)0.0597 (6)
H40.24570.94040.47000.072*
C50.2790 (3)0.7805 (3)0.58510 (17)0.0479 (5)
H50.29770.85590.64420.057*
C60.2826 (3)0.6186 (2)0.60429 (14)0.0366 (4)
C70.3227 (3)0.5732 (3)0.71685 (14)0.0406 (4)
H70.388 (3)0.492 (3)0.7285 (18)0.052 (6)*
C80.2886 (3)0.6664 (2)0.99057 (14)0.0372 (4)
C90.1339 (3)0.8556 (2)1.06241 (14)0.0375 (4)
C100.2729 (3)0.9819 (3)1.12422 (16)0.0469 (5)
H100.40231.00941.11180.056*
C110.2178 (4)1.0678 (3)1.20523 (17)0.0530 (5)
H110.31081.15301.24750.064*
C120.0278 (4)1.0282 (3)1.22337 (17)0.0517 (5)
H12−0.00801.08591.27820.062*
C13−0.1108 (3)0.9032 (3)1.16084 (18)0.0514 (5)
H13−0.24020.87681.17320.062*
C14−0.0578 (3)0.8164 (3)1.07917 (16)0.0441 (5)
H14−0.15120.73251.03620.053*
O10.2599 (4)0.2612 (3)0.43801 (14)0.0824 (6)
O20.2395 (4)0.2728 (2)0.60884 (14)0.0829 (6)
N10.2507 (3)0.3363 (2)0.52080 (13)0.0453 (4)
N20.2793 (2)0.6465 (2)0.79714 (12)0.0395 (4)
N30.3341 (3)0.6036 (2)0.89882 (12)0.0433 (4)
H3B0.411 (3)0.546 (3)0.9056 (18)0.042 (6)*
N40.1877 (3)0.7690 (2)0.97626 (13)0.0469 (4)
H4B0.150 (3)0.782 (3)0.916 (2)0.053 (7)*
S10.35639 (10)0.60896 (8)1.11356 (4)0.05372 (19)
U11U22U33U12U13U23
C10.0429 (10)0.0444 (11)0.0292 (8)0.0173 (9)0.0053 (7)−0.0006 (7)
C20.0620 (14)0.0657 (15)0.0267 (8)0.0237 (12)0.0059 (8)0.0002 (9)
C30.0796 (17)0.0730 (17)0.0355 (10)0.0323 (14)0.0075 (10)0.0168 (10)
C40.0784 (17)0.0517 (13)0.0568 (13)0.0310 (13)0.0111 (12)0.0180 (11)
C50.0622 (14)0.0456 (12)0.0411 (10)0.0246 (11)0.0072 (9)0.0003 (9)
C60.0413 (10)0.0440 (10)0.0278 (8)0.0185 (9)0.0049 (7)−0.0004 (7)
C70.0536 (12)0.0448 (11)0.0295 (8)0.0255 (10)−0.0008 (8)−0.0045 (7)
C80.0494 (11)0.0370 (10)0.0281 (8)0.0190 (9)0.0010 (7)−0.0027 (7)
C90.0547 (12)0.0367 (10)0.0281 (8)0.0247 (9)0.0037 (7)0.0017 (7)
C100.0467 (12)0.0527 (13)0.0433 (10)0.0194 (10)0.0061 (9)−0.0046 (9)
C110.0640 (15)0.0501 (13)0.0444 (11)0.0199 (11)0.0005 (10)−0.0139 (9)
C120.0698 (15)0.0571 (13)0.0395 (10)0.0352 (12)0.0114 (10)−0.0032 (9)
C130.0521 (13)0.0590 (14)0.0493 (11)0.0248 (11)0.0152 (10)0.0095 (10)
C140.0541 (12)0.0363 (10)0.0407 (10)0.0147 (9)0.0008 (9)0.0021 (8)
O10.1373 (19)0.0725 (12)0.0507 (10)0.0532 (13)0.0082 (10)−0.0205 (9)
O20.155 (2)0.0529 (11)0.0455 (9)0.0410 (12)0.0083 (11)0.0041 (8)
N10.0516 (10)0.0481 (10)0.0377 (8)0.0193 (8)0.0037 (7)−0.0076 (7)
N20.0534 (10)0.0419 (9)0.0275 (7)0.0222 (8)0.0021 (6)−0.0007 (6)
N30.0664 (12)0.0493 (10)0.0259 (7)0.0359 (10)−0.0009 (7)−0.0034 (6)
N40.0751 (13)0.0546 (11)0.0257 (7)0.0425 (10)−0.0017 (7)−0.0034 (7)
S10.0844 (4)0.0706 (4)0.0259 (2)0.0526 (3)0.0011 (2)0.0008 (2)
C1—C21.385 (3)C9—C141.374 (3)
C1—C61.405 (2)C9—C101.377 (3)
C1—N11.472 (3)C9—N41.432 (2)
C2—C31.369 (3)C10—C111.386 (3)
C2—H20.9300C10—H100.9300
C3—C41.379 (3)C11—C121.365 (3)
C3—H30.9300C11—H110.9300
C4—C51.384 (3)C12—C131.374 (3)
C4—H40.9300C12—H120.9300
C5—C61.394 (3)C13—C141.389 (3)
C5—H50.9300C13—H130.9300
C6—C71.470 (2)C14—H140.9300
C7—N21.273 (2)O1—N11.209 (2)
C7—H70.97 (2)O2—N11.202 (2)
C8—N41.327 (2)N2—N31.371 (2)
C8—N31.349 (2)N3—H3B0.87 (2)
C8—S11.6799 (18)N4—H4B0.79 (3)
C2—C1—C6122.28 (19)C10—C9—N4120.05 (19)
C2—C1—N1116.16 (17)C9—C10—C11119.3 (2)
C6—C1—N1121.55 (16)C9—C10—H10120.4
C3—C2—C1119.5 (2)C11—C10—H10120.4
C3—C2—H2120.2C12—C11—C10120.4 (2)
C1—C2—H2120.2C12—C11—H11119.8
C2—C3—C4120.11 (19)C10—C11—H11119.8
C2—C3—H3119.9C11—C12—C13120.19 (19)
C4—C3—H3119.9C11—C12—H12119.9
C3—C4—C5120.2 (2)C13—C12—H12119.9
C3—C4—H4119.9C12—C13—C14120.0 (2)
C5—C4—H4119.9C12—C13—H13120.0
C4—C5—C6121.7 (2)C14—C13—H13120.0
C4—C5—H5119.1C9—C14—C13119.4 (2)
C6—C5—H5119.1C9—C14—H14120.3
C5—C6—C1116.22 (17)C13—C14—H14120.3
C5—C6—C7119.24 (17)O2—N1—O1122.1 (2)
C1—C6—C7124.48 (17)O2—N1—C1119.95 (16)
N2—C7—C6119.59 (17)O1—N1—C1117.90 (18)
N2—C7—H7121.3 (13)C7—N2—N3115.10 (15)
C6—C7—H7119.1 (13)C8—N3—N2120.88 (16)
N4—C8—N3116.38 (16)C8—N3—H3B118.3 (14)
N4—C8—S1124.22 (13)N2—N3—H3B120.3 (14)
N3—C8—S1119.39 (14)C8—N4—C9125.10 (16)
C14—C9—C10120.63 (17)C8—N4—H4B118.8 (17)
C14—C9—N4119.25 (19)C9—N4—H4B116.1 (17)
C6—C1—C2—C3−0.5 (3)C11—C12—C13—C140.2 (3)
N1—C1—C2—C3178.3 (2)C10—C9—C14—C13−1.3 (3)
C1—C2—C3—C40.4 (4)N4—C9—C14—C13−178.36 (18)
C2—C3—C4—C50.0 (4)C12—C13—C14—C90.6 (3)
C3—C4—C5—C6−0.4 (4)C2—C1—N1—O2−166.3 (2)
C4—C5—C6—C10.4 (3)C6—C1—N1—O212.5 (3)
C4—C5—C6—C7177.9 (2)C2—C1—N1—O114.0 (3)
C2—C1—C6—C50.1 (3)C6—C1—N1—O1−167.2 (2)
N1—C1—C6—C5−178.62 (18)C6—C7—N2—N3−175.80 (18)
C2—C1—C6—C7−177.3 (2)N4—C8—N3—N20.6 (3)
N1—C1—C6—C74.0 (3)S1—C8—N3—N2179.32 (15)
C5—C6—C7—N227.7 (3)C7—N2—N3—C8−176.8 (2)
C1—C6—C7—N2−155.0 (2)N3—C8—N4—C9−176.5 (2)
C14—C9—C10—C111.1 (3)S1—C8—N4—C94.9 (3)
N4—C9—C10—C11178.15 (19)C14—C9—N4—C8−115.2 (2)
C9—C10—C11—C12−0.2 (3)C10—C9—N4—C867.7 (3)
C10—C11—C12—C13−0.4 (4)
D—H···AD—HH···AD···AD—H···A
N3—H3B···S1i0.87 (2)2.51 (2)3.3664 (18)168.8 (19)
N4—H4B···N20.79 (3)2.29 (2)2.642 (2)108 (2)
C7—H7···O20.97 (2)2.26 (2)2.703 (3)106.5 (16)
C11—H11···O1ii0.932.603.214 (3)125
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3B⋯S1i 0.87 (2)2.51 (2)3.3664 (18)168.8 (19)
N4—H4B⋯N20.79 (3)2.29 (2)2.642 (2)108 (2)
C11—H11⋯O1ii 0.932.603.214 (3)125

Symmetry codes: (i) ; (ii) .

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