Literature DB >> 22798815

1'-Butyl-2-methyl-1',2,2',3,4,9-hexa-hydro-spiro-[benzo[f]isoindole-1,3'-indole]-2',4,9-trione.

G Jagadeesan, K Sethusankar, G Bhaskar, P T Perumal.   

Abstract

In the title compound, C(24)H(22)N(2)O(3), the indoline and pyrrole-fused naphtho-quinone units are both essentially planar [r.m.s. deviations = 0.042 (3) and 0.133 (3) Å, respectively]. The pyrrole ring adopts a C-envelope conformation. The dihedral angle between the mean planes of the two five-membered rings is 89.94 (9)°. The O atoms deviate from the mean planes of the pyrrolidine and naphthalene rings by 0.0311 (2), 0.2570 (2) and 0.1669 (2) Å. In the crystal, C-H⋯O inter-actions generate dimers with R(2) (2)(16) and R(2) (2)(18) graph-set motifs. The carbonyl O atom is involved in bifurcated hydrogen bonding. C-H⋯π inter-actions also occur.

Entities:  

Year:  2012        PMID: 22798815      PMCID: PMC3393950          DOI: 10.1107/S1600536812026748

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of indole derivatives, see: Stevenson et al. (2000 ▶); Rajeswaran et al. (1999 ▶); Amal Raj et al. (2003 ▶). For a related structure, see: McSweeney et al. (2004) ▶. For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C24H22N2O3 M = 386.44 Monoclinic, a = 21.5855 (12) Å b = 15.7999 (7) Å c = 14.7469 (7) Å β = 127.207 (3)° V = 4005.7 (3) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.30 × 0.30 × 0.25 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.975, T max = 0.979 32353 measured reflections 3336 independent reflections 2446 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.178 S = 1.00 3336 reflections 264 parameters H-atom parameters constrained Δρmax = 0.53 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812026748/pv2556sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812026748/pv2556Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812026748/pv2556Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H22N2O3F(000) = 1632
Mr = 386.44Dx = 1.282 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3336 reflections
a = 21.5855 (12) Åθ = 2.6–24.5°
b = 15.7999 (7) ŵ = 0.09 mm1
c = 14.7469 (7) ÅT = 293 K
β = 127.207 (3)°Block, colourless
V = 4005.7 (3) Å30.30 × 0.30 × 0.25 mm
Z = 8
Bruker APEXII CCD area-detector diffractometer3336 independent reflections
Radiation source: fine-focus sealed tube2446 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
ω scansθmax = 24.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −24→25
Tmin = 0.975, Tmax = 0.979k = −18→18
32353 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.178H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.1024P)2 + 2.8296P] where P = (Fo2 + 2Fc2)/3
3336 reflections(Δ/σ)max < 0.001
264 parametersΔρmax = 0.53 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.29896 (13)0.09126 (16)1.2560 (2)0.0614 (6)
H10.28360.04571.27810.074*
C20.32375 (15)0.16635 (19)1.3171 (2)0.0729 (7)
H20.32460.17151.38070.088*
C30.34705 (16)0.23335 (18)1.2847 (2)0.0726 (7)
H30.36340.28311.32690.087*
C40.34673 (14)0.22839 (15)1.1912 (2)0.0627 (6)
H40.36270.27371.16970.075*
C50.32181 (12)0.15374 (14)1.13096 (18)0.0528 (5)
C60.29768 (12)0.08615 (14)1.16220 (18)0.0517 (5)
C70.27195 (12)0.01504 (14)1.07856 (18)0.0530 (5)
C80.28365 (13)0.05586 (15)0.99368 (19)0.0570 (6)
C90.34151 (14)0.18855 (18)0.9826 (2)0.0682 (7)
H9A0.32200.24540.97520.082*
H9B0.32020.16820.90680.082*
C100.42958 (16)0.1916 (2)1.0533 (3)0.0835 (8)
H10A0.44390.23891.02750.100*
H10B0.45090.20231.13200.100*
C110.4655 (2)0.1146 (2)1.0486 (3)0.1005 (10)
H11A0.44170.06551.05560.121*
H11B0.52040.11421.11230.121*
C120.4562 (3)0.1083 (3)0.9369 (4)0.1450 (17)
H12A0.40260.11720.87360.217*
H12B0.47220.05320.93110.217*
H12C0.48780.15060.93630.217*
C130.39189 (15)−0.06776 (18)1.1579 (3)0.0791 (8)
H13A0.3876−0.06621.08930.119*
H13B0.4171−0.11931.19840.119*
H13C0.4219−0.02021.20490.119*
C140.26445 (14)−0.13602 (16)1.0647 (2)0.0708 (7)
H14A0.2738−0.18271.11440.085*
H14B0.2716−0.15551.00920.085*
C150.18559 (13)−0.09920 (15)1.0084 (2)0.0585 (6)
C160.11206 (14)−0.14631 (16)0.94742 (19)0.0608 (6)
C170.04098 (13)−0.09477 (16)0.90004 (18)0.0575 (6)
C18−0.03032 (16)−0.13453 (19)0.8497 (2)0.0751 (7)
H18−0.0335−0.19330.84580.090*
C19−0.09628 (16)−0.0870 (2)0.8056 (2)0.0864 (9)
H19−0.1438−0.11380.77220.104*
C20−0.09242 (15)−0.0007 (2)0.8106 (2)0.0816 (8)
H20−0.13730.03080.78070.098*
C21−0.02266 (14)0.03991 (18)0.8594 (2)0.0679 (7)
H21−0.02050.09870.86210.081*
C220.04459 (12)−0.00674 (15)0.90473 (17)0.0544 (6)
C230.11946 (13)0.03774 (15)0.95638 (18)0.0557 (6)
C240.18925 (12)−0.01533 (14)1.01543 (18)0.0517 (5)
N10.31470 (11)0.13398 (12)1.03225 (15)0.0557 (5)
N20.31480 (11)−0.06413 (12)1.12956 (18)0.0637 (5)
O10.26952 (10)0.02136 (12)0.90967 (14)0.0752 (5)
O20.12328 (10)0.11375 (12)0.94839 (17)0.0800 (6)
O30.11025 (11)−0.22243 (12)0.93678 (18)0.0870 (6)
U11U22U33U12U13U23
C10.0563 (13)0.0760 (16)0.0590 (13)−0.0028 (11)0.0386 (11)0.0025 (12)
C20.0712 (16)0.094 (2)0.0621 (14)−0.0040 (14)0.0448 (13)−0.0125 (14)
C30.0728 (16)0.0749 (17)0.0730 (16)−0.0092 (13)0.0455 (14)−0.0187 (13)
C40.0618 (14)0.0595 (14)0.0696 (15)−0.0063 (11)0.0413 (12)−0.0041 (12)
C50.0454 (11)0.0626 (14)0.0508 (12)0.0019 (9)0.0292 (10)0.0007 (10)
C60.0413 (11)0.0606 (13)0.0526 (12)0.0003 (9)0.0281 (10)−0.0001 (10)
C70.0468 (11)0.0573 (13)0.0564 (12)0.0012 (9)0.0320 (10)−0.0013 (10)
C80.0451 (12)0.0731 (16)0.0541 (13)0.0041 (10)0.0306 (10)−0.0044 (11)
C90.0639 (15)0.0821 (17)0.0672 (14)0.0016 (12)0.0441 (13)0.0125 (13)
C100.0699 (17)0.101 (2)0.0929 (19)−0.0033 (15)0.0563 (16)0.0024 (16)
C110.084 (2)0.107 (3)0.115 (3)−0.0042 (18)0.063 (2)0.003 (2)
C120.150 (4)0.175 (4)0.137 (3)0.007 (3)0.101 (3)−0.034 (3)
C130.0517 (14)0.0852 (19)0.0931 (19)0.0096 (12)0.0399 (14)0.0035 (15)
C140.0615 (15)0.0609 (15)0.0879 (18)0.0039 (11)0.0441 (14)0.0010 (13)
C150.0546 (13)0.0578 (14)0.0625 (13)−0.0003 (10)0.0351 (11)−0.0022 (11)
C160.0642 (15)0.0571 (15)0.0627 (14)−0.0050 (11)0.0392 (12)−0.0010 (11)
C170.0549 (13)0.0713 (15)0.0502 (12)−0.0077 (11)0.0339 (11)−0.0039 (11)
C180.0649 (16)0.0880 (19)0.0735 (16)−0.0184 (14)0.0423 (14)−0.0115 (14)
C190.0568 (16)0.124 (3)0.0774 (18)−0.0200 (16)0.0404 (15)−0.0171 (18)
C200.0521 (15)0.121 (3)0.0659 (16)0.0077 (15)0.0326 (13)−0.0033 (16)
C210.0536 (14)0.0880 (18)0.0578 (14)0.0083 (12)0.0315 (12)0.0010 (12)
C220.0477 (12)0.0713 (15)0.0448 (11)0.0013 (10)0.0283 (10)0.0014 (10)
C230.0550 (13)0.0609 (15)0.0529 (12)0.0029 (10)0.0335 (11)0.0030 (10)
C240.0484 (12)0.0550 (13)0.0524 (12)0.0002 (9)0.0308 (10)−0.0016 (10)
N10.0547 (11)0.0645 (12)0.0546 (10)−0.0010 (9)0.0365 (9)0.0006 (9)
N20.0489 (11)0.0605 (12)0.0736 (13)0.0066 (8)0.0328 (10)0.0030 (10)
O10.0700 (11)0.0974 (13)0.0652 (10)−0.0079 (9)0.0446 (9)−0.0194 (10)
O20.0657 (11)0.0588 (11)0.1013 (14)0.0054 (8)0.0430 (10)0.0115 (9)
O30.0802 (13)0.0600 (12)0.1113 (15)−0.0097 (9)0.0528 (12)−0.0038 (10)
C1—C61.369 (3)C12—H12B0.9600
C1—C21.386 (4)C12—H12C0.9600
C1—H10.9300C13—N21.451 (3)
C2—C31.376 (4)C13—H13A0.9600
C2—H20.9300C13—H13B0.9600
C3—C41.376 (3)C13—H13C0.9600
C3—H30.9300C14—N21.459 (3)
C4—C51.375 (3)C14—C151.489 (3)
C4—H40.9300C14—H14A0.9700
C5—C61.384 (3)C14—H14B0.9700
C5—N11.403 (3)C15—C241.328 (3)
C6—C71.505 (3)C15—C161.468 (3)
C7—N21.464 (3)C16—O31.211 (3)
C7—C241.508 (3)C16—C171.486 (3)
C7—C81.558 (3)C17—C221.392 (3)
C8—O11.212 (3)C17—C181.390 (3)
C8—N11.355 (3)C18—C191.377 (4)
C9—N11.459 (3)C18—H180.9300
C9—C101.519 (4)C19—C201.365 (4)
C9—H9A0.9700C19—H190.9300
C9—H9B0.9700C20—C211.373 (4)
C10—C111.467 (5)C20—H200.9300
C10—H10A0.9700C21—C221.387 (3)
C10—H10B0.9700C21—H210.9300
C11—C121.536 (5)C22—C231.482 (3)
C11—H11A0.9700C23—O21.214 (3)
C11—H11B0.9700C23—C241.464 (3)
C12—H12A0.9600
C6—C1—C2118.1 (2)H12B—C12—H12C109.5
C6—C1—H1121.0N2—C13—H13A109.5
C2—C1—H1121.0N2—C13—H13B109.5
C3—C2—C1120.7 (2)H13A—C13—H13B109.5
C3—C2—H2119.6N2—C13—H13C109.5
C1—C2—H2119.6H13A—C13—H13C109.5
C2—C3—C4121.5 (2)H13B—C13—H13C109.5
C2—C3—H3119.2N2—C14—C15102.05 (19)
C4—C3—H3119.2N2—C14—H14A111.4
C3—C4—C5117.3 (2)C15—C14—H14A111.4
C3—C4—H4121.3N2—C14—H14B111.4
C5—C4—H4121.3C15—C14—H14B111.4
C4—C5—C6121.7 (2)H14A—C14—H14B109.2
C4—C5—N1128.0 (2)C24—C15—C16123.0 (2)
C6—C5—N1110.27 (19)C24—C15—C14110.6 (2)
C1—C6—C5120.6 (2)C16—C15—C14126.3 (2)
C1—C6—C7130.1 (2)O3—C16—C15121.4 (2)
C5—C6—C7109.27 (19)O3—C16—C17122.7 (2)
N2—C7—C6114.30 (18)C15—C16—C17115.9 (2)
N2—C7—C24100.92 (17)C22—C17—C18119.2 (2)
C6—C7—C24117.14 (18)C22—C17—C16120.9 (2)
N2—C7—C8114.02 (18)C18—C17—C16119.9 (2)
C6—C7—C8100.99 (18)C19—C18—C17120.0 (3)
C24—C7—C8110.01 (17)C19—C18—H18120.0
O1—C8—N1126.4 (2)C17—C18—H18120.0
O1—C8—C7124.9 (2)C20—C19—C18120.5 (3)
N1—C8—C7108.61 (18)C20—C19—H19119.7
N1—C9—C10112.7 (2)C18—C19—H19119.7
N1—C9—H9A109.1C19—C20—C21120.4 (3)
C10—C9—H9A109.1C19—C20—H20119.8
N1—C9—H9B109.1C21—C20—H20119.8
C10—C9—H9B109.1C20—C21—C22120.0 (3)
H9A—C9—H9B107.8C20—C21—H21120.0
C11—C10—C9114.7 (3)C22—C21—H21120.0
C11—C10—H10A108.6C21—C22—C17119.7 (2)
C9—C10—H10A108.6C21—C22—C23119.6 (2)
C11—C10—H10B108.6C17—C22—C23120.67 (19)
C9—C10—H10B108.6O2—C23—C24121.2 (2)
H10A—C10—H10B107.6O2—C23—C22122.4 (2)
C10—C11—C12111.9 (3)C24—C23—C22116.4 (2)
C10—C11—H11A109.2C15—C24—C23122.3 (2)
C12—C11—H11A109.2C15—C24—C7110.99 (19)
C10—C11—H11B109.2C23—C24—C7126.4 (2)
C12—C11—H11B109.2C8—N1—C5110.76 (18)
H11A—C11—H11B107.9C8—N1—C9124.99 (19)
C11—C12—H12A109.5C5—N1—C9124.2 (2)
C11—C12—H12B109.5C13—N2—C14115.3 (2)
H12A—C12—H12B109.5C13—N2—C7116.1 (2)
C11—C12—H12C109.5C14—N2—C7109.86 (18)
H12A—C12—H12C109.5
C6—C1—C2—C3−0.6 (4)C20—C21—C22—C23179.5 (2)
C1—C2—C3—C4−0.1 (4)C18—C17—C22—C210.1 (3)
C2—C3—C4—C50.3 (4)C16—C17—C22—C21179.7 (2)
C3—C4—C5—C60.2 (3)C18—C17—C22—C23−179.2 (2)
C3—C4—C5—N1178.6 (2)C16—C17—C22—C230.5 (3)
C2—C1—C6—C51.1 (3)C21—C22—C23—O2−9.4 (3)
C2—C1—C6—C7−178.1 (2)C17—C22—C23—O2169.8 (2)
C4—C5—C6—C1−0.9 (3)C21—C22—C23—C24172.3 (2)
N1—C5—C6—C1−179.54 (19)C17—C22—C23—C24−8.5 (3)
C4—C5—C6—C7178.4 (2)C16—C15—C24—C23−4.1 (4)
N1—C5—C6—C7−0.2 (2)C14—C15—C24—C23173.1 (2)
C1—C6—C7—N2−59.5 (3)C16—C15—C24—C7−177.4 (2)
C5—C6—C7—N2121.3 (2)C14—C15—C24—C7−0.3 (3)
C1—C6—C7—C2458.2 (3)O2—C23—C24—C15−167.8 (2)
C5—C6—C7—C24−121.0 (2)C22—C23—C24—C1510.5 (3)
C1—C6—C7—C8177.7 (2)O2—C23—C24—C74.4 (3)
C5—C6—C7—C8−1.6 (2)C22—C23—C24—C7−177.30 (19)
N2—C7—C8—O157.6 (3)N2—C7—C24—C15−13.6 (2)
C6—C7—C8—O1−179.4 (2)C6—C7—C24—C15−138.4 (2)
C24—C7—C8—O1−55.0 (3)C8—C7—C24—C15107.1 (2)
N2—C7—C8—N1−120.1 (2)N2—C7—C24—C23173.4 (2)
C6—C7—C8—N12.9 (2)C6—C7—C24—C2348.6 (3)
C24—C7—C8—N1127.36 (19)C8—C7—C24—C23−65.9 (3)
N1—C9—C10—C1172.8 (3)O1—C8—N1—C5179.1 (2)
C9—C10—C11—C1276.8 (4)C7—C8—N1—C5−3.3 (2)
N2—C14—C15—C2414.2 (3)O1—C8—N1—C9−4.3 (4)
N2—C14—C15—C16−168.8 (2)C7—C8—N1—C9173.35 (19)
C24—C15—C16—O3175.6 (2)C4—C5—N1—C8−176.2 (2)
C14—C15—C16—O3−1.1 (4)C6—C5—N1—C82.2 (2)
C24—C15—C16—C17−4.2 (3)C4—C5—N1—C97.1 (3)
C14—C15—C16—C17179.0 (2)C6—C5—N1—C9−174.4 (2)
O3—C16—C17—C22−173.9 (2)C10—C9—N1—C8−104.7 (3)
C15—C16—C17—C225.9 (3)C10—C9—N1—C571.5 (3)
O3—C16—C17—C185.8 (4)C15—C14—N2—C13−156.7 (2)
C15—C16—C17—C18−174.4 (2)C15—C14—N2—C7−23.2 (3)
C22—C17—C18—C19−0.3 (4)C6—C7—N2—C13−77.4 (3)
C16—C17—C18—C19−179.9 (2)C24—C7—N2—C13155.9 (2)
C17—C18—C19—C200.2 (4)C8—C7—N2—C1338.1 (3)
C18—C19—C20—C210.2 (4)C6—C7—N2—C14149.4 (2)
C19—C20—C21—C22−0.4 (4)C24—C7—N2—C1422.8 (2)
C20—C21—C22—C170.3 (3)C8—C7—N2—C14−95.1 (2)
D—H···AD—HH···AD···AD—H···A
C1—H1···O1i0.932.393.232 (4)151
C9—H9A···O2ii0.972.453.230 (3)137
C20—H20···O1iii0.932.523.205 (3)131
C11—H11B···Cg1iv0.972.823.759 (4)164
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C1—H1⋯O1i 0.932.393.232 (4)151
C9—H9A⋯O2ii 0.972.453.230 (3)137
C20—H20⋯O1iii 0.932.523.205 (3)131
C11—H11BCg1iv 0.972.823.759 (4)164

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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2.  2-Aryl tryptamines: selective high-affinity antagonists for the h5-HT2A receptor.

Authors:  G I Stevenson; A L Smith; S Lewis; S G Michie; J G Neduvelil; S Patel; R Marwood; S Patel; J L Castro
Journal:  Bioorg Med Chem Lett       Date:  2000-12-18       Impact factor: 2.823

3.  Synthesis, antimicrobial and antifungal activity of a new class of spiro pyrrolidines.

Authors:  A Amal Raj; R Raghunathan; M R SrideviKumari; N Raman
Journal:  Bioorg Med Chem       Date:  2003-02-06       Impact factor: 3.641

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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