Literature DB >> 22798771

A hydrogen sulfate salt of chlordiazepoxide.

Veronica Diesen1, Cláudio Lousada, Andreas Fischer.   

Abstract

CRYSTALS OF THE HYDROGEN SULFATE SALT OF CHLORDIAZEPOXIDE (SYSTEMATIC NAME: 7-chloro-N-methyl-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-2-iminium 4-oxide hydrogen sulfate), C(16)H(15)ClN(3)O(+)·HSO(4) (-), were obtained from a solution of chlordiazepoxide and sulfuric acid in methanol. The structure features chlordiazepoxide mol-ecules that are protonated at the imine N atom. The seven-membered ring adopts a boat conformation with the CH(2) group as the prow and the two aryl C atoms as the stern. The dihedral angle between the benzene rings is 72.41 (6)°. In the crystal, the HSO(4) (-) anion acts as a bridging group between two chlordiazepoxide cations. The H atom of the protonated imino N forms an N-H⋯O hydrogen bond with a hydrogen sulfate ion. The anion in turn forms two hydrogen bonds, O-H⋯O with the anion as donor and N-H⋯O with the anion as acceptor, to generate an R(2) (2)(10) loop. Each HSO(4) (-) anion connects two chlordiazepoxide moieties of the same chirality.

Entities:  

Year:  2012        PMID: 22798771      PMCID: PMC3393906          DOI: 10.1107/S1600536812024920

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to benzodiazepines, the structures of two polymorphs of chlordiazepoxide and a chlordiazepoxide dichloro­methane solvate, see: Fischer (2012 ▶) and references therein. For the structure of chlordiazepoxide hydro­chloride, see: Herrnstadt et al. (1979 ▶). For the synthesis of chlordiazepoxide, see: Sternbach et al. (1961 ▶). For acid–base equlibria of chlordiazepoxide and related compounds, see: Yang (1995 ▶). For the graph-set motifs, see: Etter et al. (1990 ▶).

Experimental

Crystal data

C16H15ClN3OHSO4 M = 397.84 Monoclinic, a = 13.9899 (6) Å b = 8.7579 (10) Å c = 13.9084 (6) Å β = 99.657 (9)° V = 1679.9 (2) Å3 Z = 4 Mo Kα radiation μ = 0.39 mm−1 T = 173 K 0.58 × 0.54 × 0.14 mm

Data collection

Bruker–Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.806, T max = 0.947 23827 measured reflections 3835 independent reflections 2802 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.088 S = 1.03 3835 reflections 245 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.39 e Å−3 Data collection: COLLECT (Nonius, 1999 ▶); cell refinement: DIRAX (Duisenberg, 1992 ▶); data reduction: EVALCCD (Duisenberg et al., 2003 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2007 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812024920/hb6784sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812024920/hb6784Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812024920/hb6784Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H15ClN3O+·HSO4F(000) = 824
Mr = 397.84Dx = 1.573 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 84 reflections
a = 13.9899 (6) Åθ = 4.2–20.7°
b = 8.7579 (10) ŵ = 0.39 mm1
c = 13.9084 (6) ÅT = 173 K
β = 99.657 (9)°Plate, yellow
V = 1679.9 (2) Å30.58 × 0.54 × 0.14 mm
Z = 4
Bruker–Nonius KappaCCD diffractometer2802 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.052
φ and ω scansθmax = 27.5°, θmin = 4.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −18→17
Tmin = 0.806, Tmax = 0.947k = −11→11
23827 measured reflectionsl = −18→18
3835 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0365P)2 + 1.1198P] where P = (Fo2 + 2Fc2)/3
3835 reflections(Δ/σ)max < 0.001
245 parametersΔρmax = 0.33 e Å3
1 restraintΔρmin = −0.39 e Å3
13 constraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.29397 (13)0.9226 (2)0.03883 (14)0.0192 (4)
C20.23368 (14)1.0175 (2)0.08120 (14)0.0196 (4)
C30.18881 (14)0.9588 (2)0.15418 (14)0.0189 (4)
C40.20316 (13)0.8080 (2)0.18584 (13)0.0154 (4)
C50.26573 (13)0.7120 (2)0.14382 (13)0.0157 (4)
C60.31045 (13)0.7742 (2)0.06926 (14)0.0185 (4)
C70.29408 (13)0.5551 (2)0.17423 (13)0.0147 (4)
C80.39263 (13)0.5004 (2)0.16413 (13)0.0163 (4)
C90.40329 (14)0.3805 (2)0.10173 (14)0.0192 (4)
C100.49545 (14)0.3410 (2)0.08574 (15)0.0233 (4)
C110.57571 (14)0.4185 (3)0.13293 (15)0.0253 (5)
C120.56519 (15)0.5383 (3)0.19530 (16)0.0288 (5)
C130.47339 (14)0.5800 (3)0.21034 (15)0.0251 (5)
C140.13111 (13)0.5056 (2)0.20202 (13)0.0161 (4)
C150.12400 (12)0.6247 (2)0.27772 (13)0.0144 (4)
C160.06161 (16)0.6949 (3)0.42636 (15)0.0252 (5)
Cl10.35131 (4)0.99179 (6)−0.05429 (4)0.02899 (14)
N10.15794 (11)0.76324 (19)0.26510 (11)0.0159 (3)
N20.23277 (11)0.46083 (18)0.20355 (11)0.0149 (3)
N30.08275 (12)0.5887 (2)0.35181 (12)0.0173 (3)
O10.25496 (9)0.32031 (15)0.23206 (10)0.0211 (3)
O20.21788 (10)0.2042 (2)0.39254 (12)0.0328 (4)
O30.08836 (10)0.02501 (17)0.33641 (11)0.0304 (4)
O40.12080 (11)0.1162 (2)0.50292 (11)0.0361 (4)
O50.04859 (11)0.28024 (17)0.37061 (12)0.0309 (4)
S10.11383 (3)0.15276 (5)0.40179 (3)0.01669 (12)
H20.22341.12040.06050.024*
H30.14711.02270.18370.023*
H60.35290.71230.03930.022*
H90.34810.32590.07020.023*
H100.50330.26020.04210.028*
H110.63860.38950.12250.030*
H120.62060.59150.22750.035*
H130.46560.66310.25230.030*
H14A0.09280.41490.21450.019*
H14B0.10370.54610.13680.019*
H16A0.11940.75620.45000.038*
H16B0.04290.63750.48080.038*
H16C0.00830.76250.39830.038*
H10.1412 (14)0.834 (2)0.2988 (14)0.019*
H3A0.0662 (16)0.499 (3)0.3548 (16)0.021*
H2A0.2223 (18)0.242 (3)0.340 (2)0.039*
U11U22U33U12U13U23
C10.0178 (9)0.0210 (11)0.0193 (10)−0.0002 (8)0.0049 (7)0.0032 (8)
C20.0213 (10)0.0141 (10)0.0233 (10)0.0017 (8)0.0030 (8)0.0017 (8)
C30.0186 (10)0.0169 (10)0.0212 (10)0.0034 (8)0.0035 (7)−0.0027 (8)
C40.0146 (9)0.0157 (10)0.0157 (9)0.0002 (7)0.0023 (7)−0.0015 (8)
C50.0159 (9)0.0139 (10)0.0171 (9)0.0013 (7)0.0025 (7)−0.0013 (8)
C60.0181 (9)0.0186 (11)0.0197 (10)0.0026 (8)0.0061 (7)0.0007 (8)
C70.0167 (9)0.0152 (10)0.0124 (9)0.0013 (7)0.0029 (7)−0.0020 (7)
C80.0157 (9)0.0164 (10)0.0178 (9)0.0042 (8)0.0056 (7)0.0035 (8)
C90.0192 (10)0.0170 (11)0.0223 (10)0.0011 (8)0.0065 (8)0.0017 (8)
C100.0261 (11)0.0204 (11)0.0258 (11)0.0076 (9)0.0109 (8)0.0006 (9)
C110.0168 (10)0.0330 (13)0.0273 (11)0.0091 (9)0.0076 (8)0.0065 (10)
C120.0162 (10)0.0372 (14)0.0318 (12)−0.0031 (9)0.0001 (8)−0.0023 (10)
C130.0224 (11)0.0259 (12)0.0270 (11)−0.0004 (9)0.0044 (8)−0.0089 (9)
C140.0136 (9)0.0176 (10)0.0178 (9)0.0003 (7)0.0052 (7)−0.0031 (8)
C150.0110 (8)0.0165 (10)0.0159 (9)0.0035 (7)0.0023 (7)−0.0004 (8)
C160.0315 (11)0.0263 (12)0.0201 (10)0.0063 (9)0.0113 (8)0.0000 (9)
Cl10.0333 (3)0.0255 (3)0.0325 (3)0.0051 (2)0.0179 (2)0.0108 (2)
N10.0191 (8)0.0146 (9)0.0156 (8)0.0026 (7)0.0073 (6)−0.0036 (7)
N20.0178 (8)0.0125 (8)0.0151 (8)0.0032 (6)0.0048 (6)−0.0009 (6)
N30.0202 (8)0.0142 (9)0.0191 (8)0.0019 (7)0.0082 (6)−0.0007 (7)
O10.0272 (7)0.0124 (7)0.0265 (8)0.0044 (6)0.0123 (6)0.0029 (6)
O20.0210 (8)0.0484 (11)0.0283 (8)−0.0117 (7)0.0018 (6)0.0130 (8)
O30.0296 (8)0.0227 (8)0.0402 (9)−0.0017 (6)0.0100 (7)−0.0145 (7)
O40.0409 (9)0.0502 (11)0.0195 (8)0.0005 (8)0.0113 (6)0.0093 (7)
O50.0319 (8)0.0177 (8)0.0434 (9)0.0045 (6)0.0071 (7)0.0043 (7)
S10.0206 (2)0.0146 (2)0.0162 (2)−0.00200 (19)0.00691 (17)−0.00031 (19)
C1—C61.375 (3)N2—O11.314 (2)
C1—C21.384 (3)O2—S11.5495 (15)
C1—Cl11.7426 (19)O3—S11.4481 (15)
C2—C31.379 (3)O4—S11.4299 (15)
C3—C41.396 (3)O5—S11.4611 (15)
C4—C51.409 (3)C2—H20.9500
C4—N11.415 (2)C3—H30.9500
C5—C61.407 (3)C6—H60.9500
C5—C71.473 (3)C9—H90.9500
C7—N21.304 (2)C10—H100.9500
C7—C81.488 (2)C11—H110.9500
C8—C91.386 (3)C12—H120.9500
C8—C131.390 (3)C13—H130.9500
C9—C101.388 (3)C14—H14A0.9900
C10—C111.381 (3)C14—H14B0.9900
C11—C121.385 (3)C16—H16A0.9800
C12—C131.384 (3)C16—H16B0.9800
C14—N21.472 (2)C16—H16C0.9800
C14—C151.497 (3)N1—H10.837 (15)
C15—N31.301 (2)N3—H3A0.82 (2)
C15—N11.325 (2)O2—H2A0.81 (3)
C16—N31.460 (3)
C6—C1—C2121.28 (18)O4—S1—O2103.70 (9)
C6—C1—Cl1118.89 (15)O3—S1—O2107.94 (9)
C2—C1—Cl1119.83 (16)O5—S1—O2107.58 (9)
C3—C2—C1118.37 (18)C3—C2—H2120.8
C2—C3—C4121.68 (18)C1—C2—H2120.8
C3—C4—C5120.00 (17)C2—C3—H3119.2
C3—C4—N1116.63 (16)C4—C3—H3119.2
C5—C4—N1123.22 (17)C1—C6—H6119.3
C6—C5—C4117.30 (17)C5—C6—H6119.3
C6—C5—C7116.17 (16)C8—C9—H9120.4
C4—C5—C7126.42 (17)C10—C9—H9120.4
C1—C6—C5121.36 (18)C11—C10—H10119.9
N2—C7—C5121.40 (16)C9—C10—H10119.9
N2—C7—C8119.59 (17)C10—C11—H11119.8
C5—C7—C8118.85 (16)C12—C11—H11119.8
C9—C8—C13120.34 (17)C13—C12—H12120.2
C9—C8—C7120.11 (17)C11—C12—H12120.2
C13—C8—C7119.25 (17)C12—C13—H13120.0
C8—C9—C10119.30 (18)C8—C13—H13120.0
C11—C10—C9120.29 (19)N2—C14—H14A109.5
C10—C11—C12120.47 (18)C15—C14—H14A109.5
C13—C12—C11119.6 (2)N2—C14—H14B109.5
C12—C13—C8120.01 (19)C15—C14—H14B109.5
N2—C14—C15110.70 (15)H14A—C14—H14B108.1
N3—C15—N1122.88 (17)N3—C16—H16A109.5
N3—C15—C14118.61 (17)N3—C16—H16B109.5
N1—C15—C14118.50 (16)H16A—C16—H16B109.5
C15—N1—C4125.00 (16)N3—C16—H16C109.5
C7—N2—O1123.56 (15)H16A—C16—H16C109.5
C7—N2—C14120.75 (16)H16B—C16—H16C109.5
O1—N2—C14115.63 (14)C15—N1—H1117.9 (15)
C15—N3—C16125.30 (18)C4—N1—H1115.7 (15)
O4—S1—O3114.42 (10)C15—N3—H3A116.0 (16)
O4—S1—O5113.54 (10)C16—N3—H3A118.7 (16)
O3—S1—O5109.17 (9)S1—O2—H2A114.0 (18)
D—H···AD—HH···AD···AD—H···A
N3—H3A···O50.82 (2)1.95 (2)2.764 (2)171 (2)
N1—H1···O3i0.84 (2)1.93 (2)2.741 (2)162 (2)
O2—H2A···O10.81 (3)1.78 (3)2.583 (2)170 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3A⋯O50.82 (2)1.95 (2)2.764 (2)171 (2)
N1—H1⋯O3i 0.84 (2)1.93 (2)2.741 (2)162 (2)
O2—H2A⋯O10.81 (3)1.78 (3)2.583 (2)170 (3)

Symmetry code: (i) .

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Authors:  S K Yang
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