Literature DB >> 22784791

Temperate membrane-containing halophilic archaeal virus SNJ1 has a circular dsDNA genome identical to that of plasmid pHH205.

Ziqian Zhang1, Ying Liu, Shuai Wang, Di Yang, Yichen Cheng, Jiani Hu, Jin Chen, Yunjun Mei, Ping Shen, Dennis H Bamford, Xiangdong Chen.   

Abstract

A temperate haloarchaeal virus, SNJ1, was induced from the lysogenic host, Natrinema sp. J7-1, with mitomycin C, and the virus produced plaques on lawns of Natrinema sp. J7-2. Optimization of the induction conditions allowed us to increase the titer from ~10(4) PFU/ml to ~10(11) PFU/ml. Single-step growth curves exhibited a burst size of ~100 PFU/cell. The genome of SNJ1 was observed to be a circular, double-stranded DNA (dsDNA) molecule (16,341 bp). Surprisingly, the sequence of SNJ1 was identical to that of a previously described plasmid, pHH205, indicating that this plasmid is the provirus of SNJ1. Several structural protein-encoding genes were identified in the viral genome. In addition, the comparison of putative packaging ATPase sequences from bacterial, archaeal and eukaryotic viruses, as well as the presence of lipid constituents from the host phospholipid pool, strongly suggest that SNJ1 belongs to the PRD1-type lineage of dsDNA viruses, which have an internal membrane.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22784791     DOI: 10.1016/j.virol.2012.05.036

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  24 in total

1.  ORF4 of the Temperate Archaeal Virus SNJ1 Governs the Lysis-Lysogeny Switch and Superinfection Immunity.

Authors:  Beibei Chen; Zhao Chen; Yuchen Wang; Han Gong; Linshan Sima; Jiao Wang; Shushan Ouyang; Wenqiang Gan; Mart Krupovic; Xiangdong Chen; Shishen Du
Journal:  J Virol       Date:  2020-07-30       Impact factor: 5.103

2.  When Competing Viruses Unify: Evolution, Conservation, and Plasticity of Genetic Identities.

Authors:  Luis P Villarreal; Guenther Witzany
Journal:  J Mol Evol       Date:  2015-05-27       Impact factor: 2.395

Review 3.  Archaeal extrachromosomal genetic elements.

Authors:  Haina Wang; Nan Peng; Shiraz A Shah; Li Huang; Qunxin She
Journal:  Microbiol Mol Biol Rev       Date:  2015-03       Impact factor: 11.056

Review 4.  Mechanisms of gene flow in archaea.

Authors:  Alexander Wagner; Rachel J Whitaker; David J Krause; Jan-Hendrik Heilers; Marleen van Wolferen; Chris van der Does; Sonja-Verena Albers
Journal:  Nat Rev Microbiol       Date:  2017-05-15       Impact factor: 60.633

Review 5.  Viruses of archaea: Structural, functional, environmental and evolutionary genomics.

Authors:  Mart Krupovic; Virginija Cvirkaite-Krupovic; Jaime Iranzo; David Prangishvili; Eugene V Koonin
Journal:  Virus Res       Date:  2017-11-22       Impact factor: 3.303

Review 6.  Virus world as an evolutionary network of viruses and capsidless selfish elements.

Authors:  Eugene V Koonin; Valerian V Dolja
Journal:  Microbiol Mol Biol Rev       Date:  2014-06       Impact factor: 11.056

7.  Living side by side with a virus: characterization of two novel plasmids from Thermococcus prieurii, a host for the spindle-shaped virus TPV1.

Authors:  Aurore Gorlas; Mart Krupovic; Patrick Forterre; Claire Geslin
Journal:  Appl Environ Microbiol       Date:  2013-04-12       Impact factor: 4.792

8.  Identification, Characterization, and Application of the Replicon Region of the Halophilic Temperate Sphaerolipovirus SNJ1.

Authors:  Yuchen Wang; Linshan Sima; Jie Lv; Suiyuan Huang; Ying Liu; Jiao Wang; Mart Krupovic; Xiangdong Chen
Journal:  J Bacteriol       Date:  2016-06-27       Impact factor: 3.490

9.  Bipartite Network Analysis of the Archaeal Virosphere: Evolutionary Connections between Viruses and Capsidless Mobile Elements.

Authors:  Jaime Iranzo; Eugene V Koonin; David Prangishvili; Mart Krupovic
Journal:  J Virol       Date:  2016-11-28       Impact factor: 5.103

10.  Molecular characterization of pHRDV1, a new virus-like mobile genetic element closely related to pleomorphic viruses in haloarchaea.

Authors:  Shaoxing Chen; Chuanming Wang; Jian-Ping Xu; Zhu L Yang
Journal:  Extremophiles       Date:  2013-12-29       Impact factor: 2.395

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