Literature DB >> 22779058

A selective voting convex-hull ensemble procedure for personalized medicine.

Radhakrishnan Nagarajan1, Ralph L Kodell.   

Abstract

Genes work in concert as a system as opposed to independent entities and mediate disease states. There has been considerable interest in understanding variations in molecular signatures between normal and disease states. However, a majority of techniques implicitly assume homogeneity between samples within a given group and use a fixed set of genes in discerning the groups. The proposed study overcomes these caveats by using a selective-voting convex-hull ensemble procedure that accommodates molecular heterogeneity within and between groups. The significance of the study is its potential to selectively retrieve sample-specific ensemble sets and investigate variations in the networks corresponding to the ensemble set across these samples. These characteristics fit well within the scope of personalized medicine and comparative effectiveness research that emphasize on patient-tailored interventions. While the results are demonstrated on colon cancer gene expression profiles the approach as such is generic and can be readily extended to other settings.

Entities:  

Year:  2012        PMID: 22779058      PMCID: PMC3392048     

Source DB:  PubMed          Journal:  AMIA Jt Summits Transl Sci Proc


  16 in total

1.  Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements.

Authors:  A J Butte; I S Kohane
Journal:  Pac Symp Biocomput       Date:  2000

2.  Individual osteoblasts in the developing calvaria express different gene repertoires.

Authors:  G A Candeliere; F Liu; J E Aubin
Journal:  Bone       Date:  2001-04       Impact factor: 4.398

3.  Inhibition of adipogenesis by Wnt signaling.

Authors:  S E Ross; N Hemati; K A Longo; C N Bennett; P C Lucas; R L Erickson; O A MacDougald
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

4.  Stochastic gene expression in a single cell.

Authors:  Michael B Elowitz; Arnold J Levine; Eric D Siggia; Peter S Swain
Journal:  Science       Date:  2002-08-16       Impact factor: 47.728

5.  Causal protein-signaling networks derived from multiparameter single-cell data.

Authors:  Karen Sachs; Omar Perez; Dana Pe'er; Douglas A Lauffenburger; Garry P Nolan
Journal:  Science       Date:  2005-04-22       Impact factor: 47.728

6.  Clinical and genetic heterogeneity of erythrokeratoderma variabilis.

Authors:  John E A Common; Edel A O'Toole; Irene M Leigh; Anna Thomas; William A D Griffiths; Vanessa Venning; Sophie Grabczynska; Zdravko Peris; Aleksej Kansky; David P Kelsell
Journal:  J Invest Dermatol       Date:  2005-11       Impact factor: 8.551

7.  Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays.

Authors:  U Alon; N Barkai; D A Notterman; K Gish; S Ybarra; D Mack; A J Levine
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-08       Impact factor: 11.205

8.  Diagnosis of multiple cancer types by shrunken centroids of gene expression.

Authors:  Robert Tibshirani; Trevor Hastie; Balasubramanian Narasimhan; Gilbert Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-14       Impact factor: 11.205

9.  Molecular portraits of human breast tumours.

Authors:  C M Perou; T Sørlie; M B Eisen; M van de Rijn; S S Jeffrey; C A Rees; J R Pollack; D T Ross; H Johnsen; L A Akslen; O Fluge; A Pergamenschikov; C Williams; S X Zhu; P E Lønning; A L Børresen-Dale; P O Brown; D Botstein
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

10.  Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks.

Authors:  J Khan; J S Wei; M Ringnér; L H Saal; M Ladanyi; F Westermann; F Berthold; M Schwab; C R Antonescu; C Peterson; P S Meltzer
Journal:  Nat Med       Date:  2001-06       Impact factor: 53.440

View more
  1 in total

1.  Patient-Specific Variations in Biomarkers across Gingivitis and Periodontitis.

Authors:  Radhakrishnan Nagarajan; Craig S Miller; Dolph Dawson; Mohanad Al-Sabbagh; Jeffrey L Ebersole
Journal:  PLoS One       Date:  2015-09-25       Impact factor: 3.240

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.