Literature DB >> 22778405

Insights into salt tolerance from the genome of Thellungiella salsuginea.

Hua-Jun Wu1, Zhonghui Zhang, Jun-Yi Wang, Dong-Ha Oh, Maheshi Dassanayake, Binghang Liu, Quanfei Huang, Hai-Xi Sun, Ran Xia, Yaorong Wu, Yi-Nan Wang, Zhao Yang, Yang Liu, Wanke Zhang, Huawei Zhang, Jinfang Chu, Cunyu Yan, Shuang Fang, Jinsong Zhang, Yiqin Wang, Fengxia Zhang, Guodong Wang, Sang Yeol Lee, John M Cheeseman, Bicheng Yang, Bo Li, Jiumeng Min, Linfeng Yang, Jun Wang, Chengcai Chu, Shou-Yi Chen, Hans J Bohnert, Jian-Kang Zhu, Xiu-Jie Wang, Qi Xie.   

Abstract

Thellungiella salsuginea, a close relative of Arabidopsis, represents an extremophile model for abiotic stress tolerance studies. We present the draft sequence of the T. salsuginea genome, assembled based on ~134-fold coverage to seven chromosomes with a coding capacity of at least 28,457 genes. This genome provides resources and evidence about the nature of defense mechanisms constituting the genetic basis underlying plant abiotic stress tolerance. Comparative genomics and experimental analyses identified genes related to cation transport, abscisic acid signaling, and wax production prominent in T. salsuginea as possible contributors to its success in stressful environments.

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Year:  2012        PMID: 22778405      PMCID: PMC3409768          DOI: 10.1073/pnas.1209954109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

Review 1.  Learning from the Arabidopsis experience. The next gene search paradigm.

Authors:  R A Bressan; C Zhang; H Zhang; P M Hasegawa; H J Bohnert; J K Zhu
Journal:  Plant Physiol       Date:  2001-12       Impact factor: 8.340

Review 2.  Life at the extreme: lessons from the genome.

Authors:  Dong-Ha Oh; Maheshi Dassanayake; Hans J Bohnert; John M Cheeseman
Journal:  Genome Biol       Date:  2012       Impact factor: 13.583

3.  ABySS: a parallel assembler for short read sequence data.

Authors:  Jared T Simpson; Kim Wong; Shaun D Jackman; Jacqueline E Schein; Steven J M Jones; Inanç Birol
Journal:  Genome Res       Date:  2009-02-27       Impact factor: 9.043

4.  Chromosomal phylogeny and karyotype evolution in x=7 crucifer species (Brassicaceae).

Authors:  Terezie Mandáková; Martin A Lysak
Journal:  Plant Cell       Date:  2008-10-03       Impact factor: 11.277

5.  Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.

Authors: 
Journal:  Nature       Date:  2000-12-14       Impact factor: 49.962

6.  Isolation and functional characterization of the Arabidopsis salt-tolerance 32 (AtSAT32) gene associated with salt tolerance and ABA signaling.

Authors:  Min-Young Park; Moon-Soo Chung; Hee-Seok Koh; Dong J Lee; Sung-Ju Ahn; Cheol S Kim
Journal:  Physiol Plant       Date:  2009-02-05       Impact factor: 4.500

7.  Versatile and open software for comparing large genomes.

Authors:  Stefan Kurtz; Adam Phillippy; Arthur L Delcher; Michael Smoot; Martin Shumway; Corina Antonescu; Steven L Salzberg
Journal:  Genome Biol       Date:  2004-01-30       Impact factor: 13.583

8.  The impact of water deficiency on leaf cuticle lipids of Arabidopsis.

Authors:  Dylan K Kosma; Brice Bourdenx; Amélie Bernard; Eugene P Parsons; Shiyou Lü; Jérôme Joubès; Matthew A Jenks
Journal:  Plant Physiol       Date:  2009-10-09       Impact factor: 8.340

Review 9.  Learning from evolution: Thellungiella generates new knowledge on essential and critical components of abiotic stress tolerance in plants.

Authors:  Anna Amtmann
Journal:  Mol Plant       Date:  2009-01       Impact factor: 13.164

10.  Soybean Trihelix transcription factors GmGT-2A and GmGT-2B improve plant tolerance to abiotic stresses in transgenic Arabidopsis.

Authors:  Zong-Ming Xie; Hong-Feng Zou; Gang Lei; Wei Wei; Qi-Yun Zhou; Can-Fang Niu; Yong Liao; Ai-Guo Tian; Biao Ma; Wan-Ke Zhang; Jin-Song Zhang; Shou-Yi Chen
Journal:  PLoS One       Date:  2009-09-04       Impact factor: 3.240

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  107 in total

1.  CrusView: a Java-based visualization platform for comparative genomics analyses in Brassicaceae species.

Authors:  Hao Chen; Xiangfeng Wang
Journal:  Plant Physiol       Date:  2013-07-29       Impact factor: 8.340

2.  Deciphering the diploid ancestral genome of the Mesohexaploid Brassica rapa.

Authors:  Feng Cheng; Terezie Mandáková; Jian Wu; Qi Xie; Martin A Lysak; Xiaowu Wang
Journal:  Plant Cell       Date:  2013-05-07       Impact factor: 11.277

3.  Genome structures and transcriptomes signify niche adaptation for the multiple-ion-tolerant extremophyte Schrenkiella parvula.

Authors:  Dong-Ha Oh; Hyewon Hong; Sang Yeol Lee; Dae-Jin Yun; Hans J Bohnert; Maheshi Dassanayake
Journal:  Plant Physiol       Date:  2014-02-21       Impact factor: 8.340

4.  HsfB2b-mediated repression of PRR7 directs abiotic stress responses of the circadian clock.

Authors:  Elsebeth Kolmos; Brenda Y Chow; Jose L Pruneda-Paz; Steve A Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-28       Impact factor: 11.205

Review 5.  Halophytism: What Have We Learnt From Arabidopsis thaliana Relative Model Systems?

Authors:  Yana Kazachkova; Gil Eshel; Pramod Pantha; John M Cheeseman; Maheshi Dassanayake; Simon Barak
Journal:  Plant Physiol       Date:  2018-09-20       Impact factor: 8.340

6.  De novo transcriptome sequencing of Acer palmatum and comprehensive analysis of differentially expressed genes under salt stress in two contrasting genotypes.

Authors:  Liping Rong; Qianzhong Li; Shushun Li; Ling Tang; Jing Wen
Journal:  Mol Genet Genomics       Date:  2015-10-16       Impact factor: 3.291

Review 7.  Plant science's next top models.

Authors:  Igor Cesarino; Raffaele Dello Ioio; Gwendolyn K Kirschner; Michael S Ogden; Kelsey L Picard; Madlen I Rast-Somssich; Marc Somssich
Journal:  Ann Bot       Date:  2020-06-19       Impact factor: 4.357

8.  The Thellungiella salsuginea tonoplast aquaporin TsTIP1;2 functions in protection against multiple abiotic stresses.

Authors:  Li-Li Wang; An-Ping Chen; Nai-Qin Zhong; Ning Liu; Xiao-Min Wu; Fang Wang; Chun-Lin Yang; Michael F Romero; Gui-Xian Xia
Journal:  Plant Cell Physiol       Date:  2013-11-09       Impact factor: 4.927

Review 9.  Physiological and molecular mechanisms of plant salt tolerance.

Authors:  Jin-Lin Zhang; Huazhong Shi
Journal:  Photosynth Res       Date:  2013-03-29       Impact factor: 3.573

10.  Transcriptome responses to combinations of stresses in Arabidopsis.

Authors:  Simon Rasmussen; Pankaj Barah; Maria Cristina Suarez-Rodriguez; Simon Bressendorff; Pia Friis; Paolo Costantino; Atle M Bones; Henrik Bjørn Nielsen; John Mundy
Journal:  Plant Physiol       Date:  2013-02-27       Impact factor: 8.340

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