Literature DB >> 22777830

The catalytic domain of the germination-specific lytic transglycosylase SleB from Bacillus anthracis displays a unique active site topology.

Xing Jing1, Howard R Robinson, Jared D Heffron, David L Popham, Florian D Schubot.   

Abstract

Bacillus anthracis produces metabolically inactive spores. Germination of these spores requires germination-specific lytic enzymes (GSLEs) that degrade the unique cortex peptidoglycan to permit resumption of metabolic activity and outgrowth. We report the first crystal structure of the catalytic domain of a GSLE, SleB. The structure revealed a transglycosylase fold with unique active site topology and permitted identification of the catalytic glutamate residue. Moreover, the structure provided insights into the molecular basis for the specificity of the enzyme for muramic-δ-lactam-containing cortex peptidoglycan. The protein also contains a metal-binding site that is positioned directly at the entrance of the substrate-binding cleft.
Copyright © 2012 Wiley Periodicals, Inc.

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Year:  2012        PMID: 22777830      PMCID: PMC3621120          DOI: 10.1002/prot.24140

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  23 in total

1.  Properties of spores of Bacillus subtilis blocked at an intermediate stage in spore germination.

Authors:  B Setlow; E Melly; P Setlow
Journal:  J Bacteriol       Date:  2001-08       Impact factor: 3.490

Review 2.  Lytic transglycosylases: bacterial space-making autolysins.

Authors:  Edie Scheurwater; Chris W Reid; Anthony J Clarke
Journal:  Int J Biochem Cell Biol       Date:  2007-03-30       Impact factor: 5.085

3.  Regulation and characterization of a newly deduced cell wall hydrolase gene (cwlJ) which affects germination of Bacillus subtilis spores.

Authors:  S Ishikawa; K Yamane; J Sekiguchi
Journal:  J Bacteriol       Date:  1998-03       Impact factor: 3.490

4.  Muramic lactam in peptidoglycan of Bacillus subtilis spores is required for spore outgrowth but not for spore dehydration or heat resistance.

Authors:  D L Popham; J Helin; C E Costello; P Setlow
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-24       Impact factor: 11.205

5.  A novel spore peptidoglycan hydrolase of Bacillus cereus: biochemical characterization and nucleotide sequence of the corresponding gene, sleL.

Authors:  Y Chen; S Fukuoka; S Makino
Journal:  J Bacteriol       Date:  2000-03       Impact factor: 3.490

6.  Analysis of spore cortex lytic enzymes and related proteins in Bacillus subtilis endospore germination.

Authors:  Haridasan Chirakkal; Michele O'Rourke; Abdelmadjid Atrih; Simon J Foster; Anne Moir
Journal:  Microbiology       Date:  2002-08       Impact factor: 2.777

7.  Contributions of four cortex lytic enzymes to germination of Bacillus anthracis spores.

Authors:  Jared D Heffron; Emily A Lambert; Nora Sherry; David L Popham
Journal:  J Bacteriol       Date:  2009-12-04       Impact factor: 3.490

8.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

9.  A gene (sleB) encoding a spore cortex-lytic enzyme from Bacillus subtilis and response of the enzyme to L-alanine-mediated germination.

Authors:  R Moriyama; A Hattori; S Miyata; S Kudoh; S Makino
Journal:  J Bacteriol       Date:  1996-10       Impact factor: 3.490

10.  Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure.

Authors:  W A Hendrickson; J R Horton; D M LeMaster
Journal:  EMBO J       Date:  1990-05       Impact factor: 11.598

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  11 in total

1.  Role of YpeB in cortex hydrolysis during germination of Bacillus anthracis spores.

Authors:  Casey B Bernhards; David L Popham
Journal:  J Bacteriol       Date:  2014-07-14       Impact factor: 3.490

Review 2.  Germination of spores of Bacillus species: what we know and do not know.

Authors:  Peter Setlow
Journal:  J Bacteriol       Date:  2014-01-31       Impact factor: 3.490

3.  Crystal Structures of the SpoIID Lytic Transglycosylases Essential for Bacterial Sporulation.

Authors:  Salvatore Nocadello; George Minasov; Ludmilla S Shuvalova; Ievgeniia Dubrovska; Elisabetta Sabini; Wayne F Anderson
Journal:  J Biol Chem       Date:  2016-05-18       Impact factor: 5.157

4.  Activity and regulation of various forms of CwlJ, SleB, and YpeB proteins in degrading cortex peptidoglycan of spores of Bacillus species in vitro and during spore germination.

Authors:  Yunfeng Li; Xuan Y Butzin; Andrew Davis; Barbara Setlow; George Korza; Fatma Işik Üstok; Graham Christie; Peter Setlow; Bing Hao
Journal:  J Bacteriol       Date:  2013-03-29       Impact factor: 3.490

Review 5.  Bacterial cell-wall recycling.

Authors:  Jarrod W Johnson; Jed F Fisher; Shahriar Mobashery
Journal:  Ann N Y Acad Sci       Date:  2012-11-16       Impact factor: 5.691

Review 6.  Lytic transglycosylases: concinnity in concision of the bacterial cell wall.

Authors:  David A Dik; Daniel R Marous; Jed F Fisher; Shahriar Mobashery
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-06-23       Impact factor: 8.250

7.  Functional analysis of SleC from Clostridium difficile: an essential lytic transglycosylase involved in spore germination.

Authors:  Danielle Gutelius; Kirsten Hokeness; Susan M Logan; Christopher W Reid
Journal:  Microbiology (Reading)       Date:  2013-10-18       Impact factor: 2.777

8.  Identification of MltG as a potential terminase for peptidoglycan polymerization in bacteria.

Authors:  Rachel Yunck; Hongbaek Cho; Thomas G Bernhardt
Journal:  Mol Microbiol       Date:  2015-11-19       Impact factor: 3.501

9.  Spore germination mediated by Bacillus megaterium QM B1551 SleL and YpeB.

Authors:  Fatma Işik Ūstok; Len C Packman; Christopher R Lowe; Graham Christie
Journal:  J Bacteriol       Date:  2013-12-27       Impact factor: 3.490

10.  YpeB dimerization may be required to stabilize SleB for effective germination of Bacillus anthracis spores.

Authors:  Cameron V Sayer; David L Popham
Journal:  BMC Microbiol       Date:  2019-07-26       Impact factor: 3.605

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