Literature DB >> 22773638

Comparative assessment of nitrogen fixation methodologies, conducted in the oligotrophic North Pacific Ocean.

Samuel T Wilson1, Daniela Böttjer, Matthew J Church, David M Karl.   

Abstract

Resolution of the nitrogen (N) cycle in the marine environment requires an accurate assessment of dinitrogen (N(2)) fixation. We present here an update on progress in conducting field measurements of acetylene reduction (AR) and (15)N(2) tracer assimilation in the oligotrophic North Pacific Subtropical Gyre (NPSG). The AR assay was conducted on discrete seawater samples using a headspace analysis system, followed by quantification of ethylene (C(2)H(4)) with a reducing compound photodetector. The rates of C(2)H(4) production were measurable for nonconcentrated seawater samples after an incubation period of 3 to 4 h. The (15)N(2) tracer measurements compared the addition of (15)N(2) as a gas bubble and dissolved as (15)N(2) enriched seawater. On all sampling occasions and at all depths, a 2- to 6-fold increase in the rate of (15)N(2) assimilation was measured when (15)N(2)-enriched seawater was added to the seawater sample compared to the addition of (15)N(2) as a gas bubble. In addition, we show that the (15)N(2)-enriched seawater can be prepared prior to its use with no detectable loss (<1.7%) of dissolved (15)N(2) during 4 weeks of storage, facilitating its use in the field. The ratio of C(2)H(4) production to (15)N(2) assimilation varied from 7 to 27 when measured simultaneously in surface seawater samples. Collectively, the modifications to the AR assay and the (15)N(2) assimilation technique present opportunities for more accurate and high frequency measurements (e.g., diel scale) of N(2) fixation, providing further insight into the contribution of different groups of diazotrophs to the input of N in the global oceans.

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Year:  2012        PMID: 22773638      PMCID: PMC3426697          DOI: 10.1128/AEM.01146-12

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  15 in total

1.  N2 fixation by unicellular bacterioplankton from the Atlantic and Pacific oceans: phylogeny and in situ rates.

Authors:  Luisa I Falcón; Edward J Carpenter; Frank Cipriano; Birgitta Bergman; Douglas G Capone
Journal:  Appl Environ Microbiol       Date:  2004-02       Impact factor: 4.792

2.  Quantification and removal of some contaminating gases from acetylene used to study gas-utilizing enzymes and microorganisms.

Authors:  M R Hyman; D J Arp
Journal:  Appl Environ Microbiol       Date:  1987-02       Impact factor: 4.792

3.  Release of Dissolved Organic Nitrogen by Marine Diazotrophic Cyanobacteria, Trichodesmium spp.

Authors:  P M Glibert; D A Bronk
Journal:  Appl Environ Microbiol       Date:  1994-11       Impact factor: 4.792

4.  Denitrification rates in a marine sediment as measured by the acetylene inhibition technique.

Authors:  J Sørensen
Journal:  Appl Environ Microbiol       Date:  1978-07       Impact factor: 4.792

5.  Spatial coupling of nitrogen inputs and losses in the ocean.

Authors:  Curtis Deutsch; Jorge L Sarmiento; Daniel M Sigman; Nicolas Gruber; John P Dunne
Journal:  Nature       Date:  2007-01-11       Impact factor: 49.962

6.  Aquatic acetylene-reduction techniques: solutions to several problems.

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Journal:  Can J Microbiol       Date:  1976-01       Impact factor: 2.419

7.  Response of marine bacterioplankton to differential filtration and confinement.

Authors:  R L Ferguson; E N Buckley; A V Palumbo
Journal:  Appl Environ Microbiol       Date:  1984-01       Impact factor: 4.792

8.  Nitrogenase activity in cyanobacteria measured by the acetylene reduction assay: a comparison between batch incubation and on-line monitoring.

Authors:  M Staal; S T Lintel-Hekkert; F Harren; L Stal
Journal:  Environ Microbiol       Date:  2001-05       Impact factor: 5.491

9.  High rates of N2 fixation by unicellular diazotrophs in the oligotrophic Pacific Ocean.

Authors:  Joseph P Montoya; Carolyn M Holl; Jonathan P Zehr; Andrew Hansen; Tracy A Villareal; Douglas G Capone
Journal:  Nature       Date:  2004-08-26       Impact factor: 49.962

10.  A Simple, High-Precision, High-Sensitivity Tracer Assay for N(inf2) Fixation.

Authors:  J P Montoya; M Voss; P Kahler; D G Capone
Journal:  Appl Environ Microbiol       Date:  1996-03       Impact factor: 4.792

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  37 in total

1.  Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera.

Authors:  Samuel T Wilson; Frank O Aylward; Francois Ribalet; Benedetto Barone; John R Casey; Paige E Connell; John M Eppley; Sara Ferrón; Jessica N Fitzsimmons; Christopher T Hayes; Anna E Romano; Kendra A Turk-Kubo; Alice Vislova; E Virginia Armbrust; David A Caron; Matthew J Church; Jonathan P Zehr; David M Karl; Edward F DeLong
Journal:  Nat Microbiol       Date:  2017-07-31       Impact factor: 17.745

2.  Biological nitrogen fixation in the oxygen-minimum region of the eastern tropical North Pacific ocean.

Authors:  Amal Jayakumar; Bonnie X Chang; Brittany Widner; Peter Bernhardt; Margaret R Mulholland; Bess B Ward
Journal:  ISME J       Date:  2017-07-25       Impact factor: 10.302

3.  Effects of nutrient enrichment on surface microbial community gene expression in the oligotrophic North Pacific Subtropical Gyre.

Authors:  J C Robidart; J D Magasin; I N Shilova; K A Turk-Kubo; S T Wilson; D M Karl; C A Scholin; J P Zehr
Journal:  ISME J       Date:  2018-09-25       Impact factor: 10.302

4.  Functional significance of dinitrogen fixation in sustaining coral productivity under oligotrophic conditions.

Authors:  Ulisse Cardini; Vanessa N Bednarz; Malik S Naumann; Nanne van Hoytema; Laura Rix; Rachel A Foster; Mamoon M D Al-Rshaidat; Christian Wild
Journal:  Proc Biol Sci       Date:  2015-11-07       Impact factor: 5.349

Review 5.  Microbial oceanography and the Hawaii Ocean Time-series programme.

Authors:  David M Karl; Matthew J Church
Journal:  Nat Rev Microbiol       Date:  2014-08-26       Impact factor: 60.633

6.  Quantifying potential N turnover rates in hypersaline microbial mats by 15N tracer techniques.

Authors:  Oksana Coban; Olivia Rasigraf; Anniek E E de Jong; Oliver Spott; Brad M Bebout
Journal:  Appl Environ Microbiol       Date:  2021-02-12       Impact factor: 4.792

7.  Diazotroph diversity and nitrogen fixation in the coral Stylophora pistillata from the Great Barrier Reef.

Authors:  Michael P Lesser; Kathleen M Morrow; Sabrina M Pankey; Sam H C Noonan
Journal:  ISME J       Date:  2017-12-08       Impact factor: 10.302

8.  The effect of nutrients on carbon and nitrogen fixation by the UCYN-A-haptophyte symbiosis.

Authors:  Andreas Krupke; Wiebke Mohr; Julie LaRoche; Bernhard M Fuchs; Rudolf I Amann; Marcel M M Kuypers
Journal:  ISME J       Date:  2014-12-23       Impact factor: 10.302

9.  High levels of heterogeneity in diazotroph diversity and activity within a putative hotspot for marine nitrogen fixation.

Authors:  Lauren F Messer; Claire Mahaffey; Charlotte M Robinson; Thomas C Jeffries; Kirralee G Baker; Jaime Bibiloni Isaksson; Martin Ostrowski; Martina A Doblin; Mark V Brown; Justin R Seymour
Journal:  ISME J       Date:  2015-11-27       Impact factor: 10.302

10.  Nitrogen fixation and denitrification activity differ between coral- and algae-dominated Red Sea reefs.

Authors:  Yusuf C El-Khaled; Florian Roth; Nils Rädecker; Arjen Tilstra; Denis B Karcher; Benjamin Kürten; Burton H Jones; Christian R Voolstra; Christian Wild
Journal:  Sci Rep       Date:  2021-06-03       Impact factor: 4.379

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