Literature DB >> 22772025

Root location in random trees: a polarity property of all sampling consistent phylogenetic models except one.

Mike Steel1.   

Abstract

Neutral macroevolutionary models, such as the Yule model, give rise to a probability distribution on the set of discrete rooted binary trees over a given leaf set. Such models can provide a signal as to the approximate location of the root when only the unrooted phylogenetic tree is known, and this signal becomes relatively more significant as the number of leaves grows. In this short note, we show that among models that treat all taxa equally, and are sampling consistent (i.e. the distribution on trees is not affected by taxa yet to be included), all such models, except one (the so-called PDA model), convey some information as to the location of the ancestral root in an unrooted tree.
Copyright © 2012 Elsevier Inc. All rights reserved.

Mesh:

Year:  2012        PMID: 22772025     DOI: 10.1016/j.ympev.2012.06.022

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  4 in total

1.  Displayed Trees Do Not Determine Distinguishability Under the Network Multispecies Coalescent.

Authors:  Sha Zhu; James H Degnan
Journal:  Syst Biol       Date:  2017-03-01       Impact factor: 15.683

2.  Clades and clans: a comparison study of two evolutionary models.

Authors:  Sha Zhu; Cuong Than; Taoyang Wu
Journal:  J Math Biol       Date:  2014-07-22       Impact factor: 2.259

3.  Inferring rooted species trees from unrooted gene trees using approximate Bayesian computation.

Authors:  Ayed R A Alanzi; James H Degnan
Journal:  Mol Phylogenet Evol       Date:  2017-08-02       Impact factor: 4.286

Review 4.  Rooting Phylogenies and the Tree of Life While Minimizing Ad Hoc and Auxiliary Assumptions.

Authors:  Gustavo Caetano-Anollés; Arshan Nasir; Kyung Mo Kim; Derek Caetano-Anollés
Journal:  Evol Bioinform Online       Date:  2018-10-20       Impact factor: 1.625

  4 in total

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