Literature DB >> 22760048

Molecular typing of Mycobacterium abscessus based on tandem-repeat polymorphism.

Y L Wong1, C S Ong, Y F Ngeow.   

Abstract

A variable-number tandem-repeat (VNTR) typing assay for the differentiation of Mycobacterium abscessus strains was developed. This assay showed complete reproducibility, locus stability, and a discriminatory power (Hunter-Gaston discriminatory index [HGDI] of 0.9563) that is superior to that of multilocus sequencing. It is a promising tool for the investigation of Mycobacterium abscessus epidemiology and nosocomial outbreaks.

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Year:  2012        PMID: 22760048      PMCID: PMC3421802          DOI: 10.1128/JCM.00753-12

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  16 in total

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2.  Tandem repeats finder: a program to analyze DNA sequences.

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3.  Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis.

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4.  Efficient differentiation of Mycobacterium abscessus complex isolates to the species level by a novel PCR-based variable-number tandem-repeat assay.

Authors:  Go-Eun Choi; Chulhun L Chang; Jake Whang; Hwa-Jung Kim; O Jung Kwon; Won-Jung Koh; Sung Jae Shin
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5.  Multilocus sequence analysis and rpoB sequencing of Mycobacterium abscessus (sensu lato) strains.

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  18 in total

1.  Support from Phylogenomic Networks and Subspecies Signatures for Separation of Mycobacterium massiliense from Mycobacterium bolletii.

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4.  Clonal relationship and differentiation among Mycobacterium abscessus isolates as determined using the semiautomated repetitive extragenic palindromic sequence PCR-based DiversiLab system.

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5.  Analysis of the genome of Mycobacterium abscessus strain M94 reveals an uncommon cluster of tRNAs.

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6.  The significance of Mycobacterium abscessus subspecies abscessus isolation during Mycobacterium avium complex lung disease therapy.

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7.  Genomic Analysis of a Hospital-Associated Outbreak of Mycobacterium abscessus: Implications on Transmission.

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9.  Two-Phase Hospital-Associated Outbreak of Mycobacterium abscessus: Investigation and Mitigation.

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10.  Whole-genome sequencing and epidemiological analysis do not provide evidence for cross-transmission of mycobacterium abscessus in a cohort of pediatric cystic fibrosis patients.

Authors:  Kathryn A Harris; Anthony Underwood; Dervla T D Kenna; Anthony Brooks; Ema Kavaliunaite; Georgia Kapatai; Rediat Tewolde; Paul Aurora; Garth Dixon
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