Literature DB >> 22750863

Expression, purification, crystallization and preliminary X-ray crystallographic analysis of Enpp1.

Kazuki Kato1, Hiroshi Nishimasu, Emiko Mihara, Ryuichiro Ishitani, Junichi Takagi, Junken Aoki, Osamu Nureki.   

Abstract

Enpp1 is an extracellular membrane-bound glycoprotein that regulates bone mineralization by hydrolyzing ATP to generate pyrophosphate. The extracellular region of mouse Enpp1 was expressed in HEK293S GnT1(-) cells, purified using the TARGET tag/P20.1-Sepharose system and crystallized. An X-ray diffraction data set was collected to 3.0 Å resolution. The crystal belonged to space group P3(1), with unit-cell parameters a = b = 105.3, c = 173.7 Å. A single-wavelength anomalous dispersion (SAD) data set was also collected to 2.7 Å resolution using a selenomethionine-labelled crystal. The experimental phases determined by the SAD method produced an interpretable electron-density map.

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Year:  2012        PMID: 22750863      PMCID: PMC3388920          DOI: 10.1107/S1744309112019306

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  12 in total

1.  PHENIX: building new software for automated crystallographic structure determination.

Authors:  Paul D Adams; Ralf W Grosse-Kunstleve; Li Wei Hung; Thomas R Ioerger; Airlie J McCoy; Nigel W Moriarty; Randy J Read; James C Sacchettini; Nicholas K Sauter; Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

2.  A rapid screening method for cell lines producing singly-tagged recombinant proteins using the "TARGET tag" system.

Authors:  Sanae Tabata; Maiko Nampo; Emiko Mihara; Keiko Tamura-Kawakami; Ikuo Fujii; Junichi Takagi
Journal:  J Proteomics       Date:  2010-06-01       Impact factor: 4.044

Review 3.  A 3D view of autotaxin.

Authors:  Hiroshi Nishimasu; Ryuichiro Ishitani; Junken Aoki; Osamu Nureki
Journal:  Trends Pharmacol Sci       Date:  2012-01-23       Impact factor: 14.819

4.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

5.  Structure and function in rhodopsin: high-level expression of rhodopsin with restricted and homogeneous N-glycosylation by a tetracycline-inducible N-acetylglucosaminyltransferase I-negative HEK293S stable mammalian cell line.

Authors:  Philip J Reeves; Nico Callewaert; Roland Contreras; H Gobind Khorana
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-07       Impact factor: 11.205

6.  Crystal structure of autotaxin and insight into GPCR activation by lipid mediators.

Authors:  Hiroshi Nishimasu; Shinichi Okudaira; Kotaro Hama; Emiko Mihara; Naoshi Dohmae; Asuka Inoue; Ryuichiro Ishitani; Junichi Takagi; Junken Aoki; Osamu Nureki
Journal:  Nat Struct Mol Biol       Date:  2011-01-16       Impact factor: 15.369

7.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

8.  Mutations in ENPP1 are associated with 'idiopathic' infantile arterial calcification.

Authors:  Frank Rutsch; Nico Ruf; Sucheta Vaingankar; Mohammad R Toliat; Anita Suk; Wolfgang Höhne; Galen Schauer; Mandy Lehmann; Tony Roscioli; Dirk Schnabel; Jörg T Epplen; Alex Knisely; Andrea Superti-Furga; James McGill; Marco Filippone; Alan R Sinaiko; Hillary Vallance; Bernd Hinrichs; Wendy Smith; Merry Ferre; Robert Terkeltaub; Peter Nürnberg
Journal:  Nat Genet       Date:  2003-08       Impact factor: 38.330

9.  Tissue-nonspecific alkaline phosphatase and plasma cell membrane glycoprotein-1 are central antagonistic regulators of bone mineralization.

Authors:  Lovisa Hessle; Kristen A Johnson; H Clarke Anderson; Sonoko Narisawa; Adnan Sali; James W Goding; Robert Terkeltaub; José Luis Millan
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-24       Impact factor: 11.205

10.  Structural basis of substrate discrimination and integrin binding by autotaxin.

Authors:  Jens Hausmann; Satwik Kamtekar; Evangelos Christodoulou; Jacqueline E Day; Tao Wu; Zachary Fulkerson; Harald M H G Albers; Laurens A van Meeteren; Anna J S Houben; Leonie van Zeijl; Silvia Jansen; Maria Andries; Troii Hall; Lyle E Pegg; Timothy E Benson; Mobien Kasiem; Karl Harlos; Craig W Vander Kooi; Susan S Smyth; Huib Ovaa; Mathieu Bollen; Andrew J Morris; Wouter H Moolenaar; Anastassis Perrakis
Journal:  Nat Struct Mol Biol       Date:  2011-01-16       Impact factor: 15.369

View more
  10 in total

1.  Expression, purification, crystallization and preliminary X-ray crystallographic analysis of Enpp6.

Authors:  Junko Morita; Kazuki Kato; Emiko Mihara; Ryuichiro Ishitani; Junichi Takagi; Hiroshi Nishimasu; Junken Aoki; Osamu Nureki
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-05-24       Impact factor: 1.056

2.  Crystal structure of Enpp1, an extracellular glycoprotein involved in bone mineralization and insulin signaling.

Authors:  Kazuki Kato; Hiroshi Nishimasu; Shinichi Okudaira; Emiko Mihara; Ryuichiro Ishitani; Junichi Takagi; Junken Aoki; Osamu Nureki
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-01       Impact factor: 11.205

3.  Structure-Aided Development of Small-Molecule Inhibitors of ENPP1, the Extracellular Phosphodiesterase of the Immunotransmitter cGAMP.

Authors:  Jacqueline A Carozza; Jenifer A Brown; Volker Böhnert; Daniel Fernandez; Yasmeen AlSaif; Rachel E Mardjuki; Mark Smith; Lingyin Li
Journal:  Cell Chem Biol       Date:  2020-07-28       Impact factor: 8.116

4.  Carbonic anhydrase III protects osteocytes from oxidative stress.

Authors:  Chao Shi; Yuhei Uda; Christopher Dedic; Ehab Azab; Ningyuan Sun; Amira I Hussein; Christopher A Petty; Keertik Fulzele; Maria C Mitterberger-Vogt; Werner Zwerschke; Renata Pereira; Kunzheng Wang; Paola Divieti Pajevic
Journal:  FASEB J       Date:  2017-09-19       Impact factor: 5.191

5.  Development of cGAMP-Luc, a sensitive and precise coupled enzyme assay to measure cGAMP in complex biological samples.

Authors:  Rachel E Mardjuki; Jacqueline A Carozza; Lingyin Li
Journal:  J Biol Chem       Date:  2020-03-03       Impact factor: 5.157

6.  Structural basis for specific inhibition of Autotaxin by a DNA aptamer.

Authors:  Kazuki Kato; Hisako Ikeda; Shin Miyakawa; Satoshi Futakawa; Yosuke Nonaka; Masatoshi Fujiwara; Shinichi Okudaira; Kuniyuki Kano; Junken Aoki; Junko Morita; Ryuichiro Ishitani; Hiroshi Nishimasu; Yoshikazu Nakamura; Osamu Nureki
Journal:  Nat Struct Mol Biol       Date:  2016-04-04       Impact factor: 15.369

7.  Extracellular cGAMP is a cancer cell-produced immunotransmitter involved in radiation-induced anti-cancer immunity.

Authors:  Jacqueline A Carozza; Volker Böhnert; Khanh C Nguyen; Gemini Skariah; Kelsey E Shaw; Jenifer A Brown; Marjan Rafat; Rie von Eyben; Edward E Graves; Jeffrey S Glenn; Mark Smith; Lingyin Li
Journal:  Nat Cancer       Date:  2020-02-24

8.  ENPP1 processes protein ADP-ribosylation in vitro.

Authors:  Luca Palazzo; Casey M Daniels; Joanne E Nettleship; Nahid Rahman; Robert Lyle McPherson; Shao-En Ong; Kazuki Kato; Osamu Nureki; Anthony K L Leung; Ivan Ahel
Journal:  FEBS J       Date:  2016-08-05       Impact factor: 5.542

9.  Cardiomyocytes disrupt pyrimidine biosynthesis in nonmyocytes to regulate heart repair.

Authors:  Shen Li; Tomohiro Yokota; Ping Wang; Johanna Ten Hoeve; Feiyang Ma; Thuc M Le; Evan R Abt; Yonggang Zhou; Rimao Wu; Maxine Nanthavongdouangsy; Abraham Rodriguez; Yijie Wang; Yen-Ju Lin; Hayato Muranaka; Mark Sharpley; Demetrios T Braddock; Vicky E MacRae; Utpal Banerjee; Pei-Yu Chiou; Marcus Seldin; Dian Huang; Michael Teitell; Ilya Gertsman; Michael Jung; Steven J Bensinger; Robert Damoiseaux; Kym Faull; Matteo Pellegrini; Aldons J Lusis; Thomas G Graeber; Caius G Radu; Arjun Deb
Journal:  J Clin Invest       Date:  2022-01-18       Impact factor: 19.456

10.  Structural insights into cGAMP degradation by Ecto-nucleotide pyrophosphatase phosphodiesterase 1.

Authors:  Kazuki Kato; Hiroshi Nishimasu; Daisuke Oikawa; Seiichi Hirano; Hisato Hirano; Go Kasuya; Ryuichiro Ishitani; Fuminori Tokunaga; Osamu Nureki
Journal:  Nat Commun       Date:  2018-10-24       Impact factor: 14.919

  10 in total

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