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Literature DB >> 22750855

Structure of the signal transduction protein TRAP (target of RNAIII-activating protein).

Abstract

The crystal structure of the signal transduction protein TRAP is reported at 1.85 Å resolution. The structure of TRAP consists of a central eight-stranded β-barrel flanked asymmetrically by helices and is monomeric both in solution and in the crystal structure. A formate ion was found bound to TRAP identically in all four molecules in the asymmetric unit.

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Year: 2012 PMID： 22750855 PMCID： PMC3388912 DOI： 10.1107/S1744309112020167

Source DB: PubMed Journal: Acta Crystallogr Sect F Struct Biol Cryst Commun ISSN： 1744-3091

38 in total

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2. Protein structure prediction on the Web: a case study using the Phyre server.

Authors: Lawrence A Kelley; Michael J E Sternberg
Journal: Nat Protoc Date: 2009 Impact factor: 13.491

3. Novel approach to phasing proteins: derivatization by short cryo-soaking with halides.

Authors: Z Dauter; M Dauter; K R Rajashankar
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4. Jalview Version 2--a multiple sequence alignment editor and analysis workbench.

Authors: Andrew M Waterhouse; James B Procter; David M A Martin; Michèle Clamp; Geoffrey J Barton
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5. 3DLigandSite: predicting ligand-binding sites using similar structures.

Authors: Mark N Wass; Lawrence A Kelley; Michael J E Sternberg
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6. Features and development of Coot.

Authors: P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal: Acta Crystallogr D Biol Crystallogr Date: 2010-03-24

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Authors: Ursula Pieper; Benjamin M Webb; David T Barkan; Dina Schneidman-Duhovny; Avner Schlessinger; Hannes Braberg; Zheng Yang; Elaine C Meng; Eric F Pettersen; Conrad C Huang; Ruchira S Datta; Parthasarathy Sampathkumar; Mallur S Madhusudhan; Kimmen Sjölander; Thomas E Ferrin; Stephen K Burley; Andrej Sali
Journal: Nucleic Acids Res Date: 2010-11-19 Impact factor: 16.971

8. The Pfam protein families database.

Authors: Marco Punta; Penny C Coggill; Ruth Y Eberhardt; Jaina Mistry; John Tate; Chris Boursnell; Ningze Pang; Kristoffer Forslund; Goran Ceric; Jody Clements; Andreas Heger; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman; Robert D Finn
Journal: Nucleic Acids Res Date: 2011-11-29 Impact factor: 16.971

Structure of the signal transduction protein TRAP (target of RNAIII-activating protein).

1. The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.

2. Protein structure prediction on the Web: a case study using the Phyre server.

3. Novel approach to phasing proteins: derivatization by short cryo-soaking with halides.

4. Jalview Version 2--a multiple sequence alignment editor and analysis workbench.

5. 3DLigandSite: predicting ligand-binding sites using similar structures.

6. Features and development of Coot.

7. ModBase, a database of annotated comparative protein structure models, and associated resources.

8. The Pfam protein families database.

9. BALBES: a molecular-replacement pipeline.

10. Phaser crystallographic software.

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