Literature DB >> 22744788

Structure and function of noncanonical nucleobases.

Thomas Carell1, Caterina Brandmayr, Antje Hienzsch, Markus Müller, David Pearson, Veronika Reiter, Ines Thoma, Peter Thumbs, Mirko Wagner.   

Abstract

DNA and RNA contain, next to the four canonical nucleobases, a number of modified nucleosides that extend their chemical information content. RNA is particularly rich in modifications, which is obviously an adaptation to their highly complex and variable functions. In fact, the modified nucleosides and their chemical structures establish a second layer of information which is of central importance to the function of the RNA molecules. Also the chemical diversity of DNA is greater than originally thought. Next to the four canonical bases, the DNA of higher organisms contains a total of four epigenetic bases: m(5) dC, hm(5) dC, f(5) dC und ca(5) dC. While all cells of an organism contain the same genetic material, their vastly different function and properties inside complex higher organisms require the controlled silencing and activation of cell-type specific genes. The regulation of the underlying silencing and activation process requires an additional layer of epigenetic information, which is clearly linked to increased chemical diversity. This diversity is provided by the modified non-canonical nucleosides in both DNA and RNA.
Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2012        PMID: 22744788     DOI: 10.1002/anie.201201193

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  54 in total

1.  Pyrene-based quantitative detection of the 5-formylcytosine loci symmetry in the CpG duplex content during TET-dependent demethylation.

Authors:  Liang Xu; Ying-Chu Chen; Jenny Chong; Andrea Fin; Lisa S McCoy; Jun Xu; Chao Zhang; Dong Wang
Journal:  Angew Chem Int Ed Engl       Date:  2014-08-27       Impact factor: 15.336

2.  Direct Sequencing of tRNA by 2D-HELS-AA MS Seq Reveals Its Different Isoforms and Dynamic Base Modifications.

Authors:  Ning Zhang; Shundi Shi; Xuanting Wang; Wenhao Ni; Xiaohong Yuan; Jiachen Duan; Tony Z Jia; Barney Yoo; Ashley Ziegler; James J Russo; Wenjia Li; Shenglong Zhang
Journal:  ACS Chem Biol       Date:  2020-05-19       Impact factor: 5.100

3.  Understanding the Molecular Basis of RNA Polymerase II Transcription.

Authors:  Su Zhang; Dong Wang
Journal:  Isr J Chem       Date:  2013-06       Impact factor: 3.333

4.  Regulation of Protein Activity and Cellular Functions Mediated by Molecularly Evolved Nucleic Acids.

Authors:  Jie Tan; Mengmeng Zhao; Jie Wang; Zhihao Li; Ling Liang; Liqin Zhang; Quan Yuan; Weihong Tan
Journal:  Angew Chem Int Ed Engl       Date:  2019-01-14       Impact factor: 15.336

5.  Orientation-dependent FRET system reveals differences in structures and flexibilities of nicked and gapped DNA duplexes.

Authors:  Hiromu Kashida; Ayako Kurihara; Hayato Kawai; Hiroyuki Asanuma
Journal:  Nucleic Acids Res       Date:  2017-06-20       Impact factor: 16.971

6.  The Dnmt2 RNA methyltransferase homolog of Geobacter sulfurreducens specifically methylates tRNA-Glu.

Authors:  Raghuvaran Shanmugam; Muktak Aklujkar; Matthias Schäfer; Richard Reinhardt; Olaf Nickel; Gunter Reuter; Derek R Lovley; Ann Ehrenhofer-Murray; Wolfgang Nellen; Serge Ankri; Mark Helm; Tomasz P Jurkowski; Albert Jeltsch
Journal:  Nucleic Acids Res       Date:  2014-04-07       Impact factor: 16.971

7.  Human tRNA(Sec) associates with HeLa membranes, cell lipid liposomes, and synthetic lipid bilayers.

Authors:  Teresa Janas; Tadeusz Janas; Michael Yarus
Journal:  RNA       Date:  2012-10-24       Impact factor: 4.942

8.  Positive-sense RNA viruses reveal the complexity and dynamics of the cellular and viral epitranscriptomes during infection.

Authors:  Will McIntyre; Rachel Netzband; Gaston Bonenfant; Jason M Biegel; Clare Miller; Gabriele Fuchs; Eric Henderson; Manoj Arra; Mario Canki; Daniele Fabris; Cara T Pager
Journal:  Nucleic Acids Res       Date:  2018-06-20       Impact factor: 16.971

9.  Detection of 3'-end RNA uridylation with a protein nanopore.

Authors:  Massimiliano Clamer; Lajos Höfler; Ellina Mikhailova; Gabriella Viero; Hagan Bayley
Journal:  ACS Nano       Date:  2013-12-31       Impact factor: 15.881

10.  Structural effects of modified ribonucleotides and magnesium in transfer RNAs.

Authors:  You Xu; Alexander D MacKerell; Lennart Nilsson
Journal:  Bioorg Med Chem       Date:  2016-06-18       Impact factor: 3.641

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