Literature DB >> 30556364

Regulation of Protein Activity and Cellular Functions Mediated by Molecularly Evolved Nucleic Acids.

Jie Tan1, Mengmeng Zhao1, Jie Wang2, Zhihao Li2, Ling Liang1, Liqin Zhang3, Quan Yuan1, Weihong Tan1,3,4.   

Abstract

Regulation of protein activity is essential for revealing the molecular mechanisms of biological processes. DNA and RNA achieve many uniquely efficient functions, such as genetic expression and regulation. The chemical capability to synthesize artificial nucleotides can expand the chemical space of nucleic acid libraries and further increase the functional diversity of nucleic acids. Herein, a versatile method has been developed for modular expansion of the chemical space of nucleic acid libraries, thus enabling the generation of aptamers able to regulate protein activity. Specifically, an aptamer that targets integrin alpha3 was identified and this aptamer can inhibit cell adhesion and migration. Overall, this chemical-design-assisted in vitro selection approach enables the generation of functional nucleic acids for elucidating the molecular basis of biological activities and uncovering a novel basis for the rational design of new protein-inhibitor pharmaceuticals.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  aptamers; cell adhesion; inhibitors; membrane proteins; molecular evolution

Year:  2019        PMID: 30556364      PMCID: PMC6442720          DOI: 10.1002/anie.201809010

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  42 in total

1.  Global conformational rearrangements in integrin extracellular domains in outside-in and inside-out signaling.

Authors:  Junichi Takagi; Benjamin M Petre; Thomas Walz; Timothy A Springer
Journal:  Cell       Date:  2002-09-06       Impact factor: 41.582

2.  Selection in vitro of single-stranded DNA molecules that fold into specific ligand-binding structures.

Authors:  A D Ellington; J W Szostak
Journal:  Nature       Date:  1992-02-27       Impact factor: 49.962

3.  Potentiation of the ligand-binding activity of integrin alpha3beta1 via association with tetraspanin CD151.

Authors:  Ryoko Nishiuchi; Noriko Sanzen; Shigeyuki Nada; Yasuhiro Sumida; Yoshinao Wada; Masato Okada; Junichi Takagi; Hitoshi Hasegawa; Kiyotoshi Sekiguchi
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-26       Impact factor: 11.205

Review 4.  Strategies for targeting protein-protein interactions with synthetic agents.

Authors:  Hang Yin; Andrew D Hamilton
Journal:  Angew Chem Int Ed Engl       Date:  2005-07-04       Impact factor: 15.336

5.  Ligand-binding specificities of laminin-binding integrins: a comprehensive survey of laminin-integrin interactions using recombinant alpha3beta1, alpha6beta1, alpha7beta1 and alpha6beta4 integrins.

Authors:  Ryoko Nishiuchi; Junichi Takagi; Maria Hayashi; Hiroyuki Ido; Yoshiko Yagi; Noriko Sanzen; Tsutomu Tsuji; Masashi Yamada; Kiyotoshi Sekiguchi
Journal:  Matrix Biol       Date:  2006-01-18       Impact factor: 11.583

Review 6.  Integrins: bidirectional, allosteric signaling machines.

Authors:  Richard O Hynes
Journal:  Cell       Date:  2002-09-20       Impact factor: 41.582

7.  Selection of single-stranded DNA molecules that bind and inhibit human thrombin.

Authors:  L C Bock; L C Griffin; J A Latham; E H Vermaas; J J Toole
Journal:  Nature       Date:  1992-02-06       Impact factor: 49.962

8.  Structure of integrin alpha5beta1 in complex with fibronectin.

Authors:  Junichi Takagi; Konstantin Strokovich; Timothy A Springer; Thomas Walz
Journal:  EMBO J       Date:  2003-09-15       Impact factor: 11.598

9.  Lutheran blood group glycoprotein and its newly characterized mouse homologue specifically bind alpha5 chain-containing human laminin with high affinity.

Authors:  S F Parsons; G Lee; F A Spring; T N Willig; L L Peters; J A Gimm; M J Tanner; N Mohandas; D J Anstee; J A Chasis
Journal:  Blood       Date:  2001-01-01       Impact factor: 22.113

Review 10.  The role of halogen bonding in inhibitor recognition and binding by protein kinases.

Authors:  Andrea Regier Voth; P Shing Ho
Journal:  Curr Top Med Chem       Date:  2007       Impact factor: 3.295

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  4 in total

Review 1.  Current Advances in Aptamer-based Biomolecular Recognition and Biological Process Regulation.

Authors:  Sisi Chen; Lei Zhang; Quan Yuan; Jie Tan
Journal:  Chem Res Chin Univ       Date:  2022-05-07       Impact factor: 2.726

Review 2.  Modified Nucleic Acids: Expanding the Capabilities of Functional Oligonucleotides.

Authors:  Steven Ochoa; Valeria T Milam
Journal:  Molecules       Date:  2020-10-13       Impact factor: 4.411

Review 3.  Preparation, applications, and challenges of functional DNA nanomaterials.

Authors:  Lei Zhang; Mengge Chu; Cailing Ji; Jie Tan; Quan Yuan
Journal:  Nano Res       Date:  2022-08-31       Impact factor: 10.269

4.  Long-term live-cell lipid droplet-targeted biosensor development for nanoscopic tracking of lipid droplet-mitochondria contact sites.

Authors:  Chengying Zhang; Huarong Shao; Jie Zhang; Xinyan Guo; Yue Liu; Zhigang Song; Fei Liu; Peixue Ling; Longguang Tang; Kang-Nan Wang; Qixin Chen
Journal:  Theranostics       Date:  2021-06-22       Impact factor: 11.556

  4 in total

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