Literature DB >> 22743764

PhenoRipper: software for rapidly profiling microscopy images.

Satwik Rajaram, Benjamin Pavie, Lani F Wu, Steven J Altschuler.   

Abstract

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Year:  2012        PMID： 22743764      PMCID： PMC3842428          DOI： 10.1038/nmeth.2097

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  8 in total

Review 1.  ImageJ for microscopy.

Authors:  Tony J Collins
Journal:  Biotechniques       Date:  2007-07       Impact factor: 1.993

2.  A reliable method for cell phenotype image classification.

Authors:  Loris Nanni; Alessandra Lumini
Journal:  Artif Intell Med       Date:  2008-04-28       Impact factor: 5.326

3.  Visual pattern mining in histology image collections using bag of features.

Authors:  Angel Cruz-Roa; Juan C Caicedo; Fabio A González
Journal:  Artif Intell Med       Date:  2011-06-12       Impact factor: 5.326

4.  Clustering phenotype populations by genome-wide RNAi and multiparametric imaging.

Authors:  Florian Fuchs; Gregoire Pau; Dominique Kranz; Oleg Sklyar; Christoph Budjan; Sandra Steinbrink; Thomas Horn; Angelika Pedal; Wolfgang Huber; Michael Boutros
Journal:  Mol Syst Biol       Date:  2010-06-08       Impact factor: 11.429

Review 5.  Pattern recognition software and techniques for biological image analysis.

Authors:  Lior Shamir; John D Delaney; Nikita Orlov; D Mark Eckley; Ilya G Goldberg
Journal:  PLoS Comput Biol       Date:  2010-11-24       Impact factor: 4.475

6.  Heterogeneity in the physiological states and pharmacological responses of differentiating 3T3-L1 preadipocytes.

Authors:  Lit-Hsin Loo; Hai-Jui Lin; Dinesh K Singh; Kathleen M Lyons; Steven J Altschuler; Lani F Wu
Journal:  J Cell Biol       Date:  2009-10-26       Impact factor: 10.539

7.  CellProfiler: image analysis software for identifying and quantifying cell phenotypes.

Authors:  Anne E Carpenter; Thouis R Jones; Michael R Lamprecht; Colin Clarke; In Han Kang; Ola Friman; David A Guertin; Joo Han Chang; Robert A Lindquist; Jason Moffat; Polina Golland; David M Sabatini
Journal:  Genome Biol       Date:  2006-10-31       Impact factor: 13.583

8.  Wndchrm - an open source utility for biological image analysis.

Authors:  Lior Shamir; Nikita Orlov; D Mark Eckley; Tomasz Macura; Josiah Johnston; Ilya G Goldberg
Journal:  Source Code Biol Med       Date:  2008-07-08
  8 in total
  36 in total

1.  Slide Set: Reproducible image analysis and batch processing with ImageJ.

Authors:  Benjamin A Nanes
Journal:  Biotechniques       Date:  2015-11-01       Impact factor: 1.993

2.  Rapid analysis and exploration of fluorescence microscopy images.

Authors:  Benjamin Pavie; Satwik Rajaram; Austin Ouyang; Jason M Altschuler; Robert J Steininger; Lani F Wu; Steven J Altschuler
Journal:  J Vis Exp       Date:  2014-03-19       Impact factor: 1.355

3.  Quality Control for High-Throughput Imaging Experiments Using Machine Learning in Cellprofiler.

Authors:  Mark-Anthony Bray; Anne E Carpenter
Journal:  Methods Mol Biol       Date:  2018

4.  Phenotypic Variation Between Stromal Cells Differentially Impacts Engineered Cardiac Tissue Function.

Authors:  Tracy A Hookway; Oriane B Matthys; Federico N Mendoza-Camacho; Sarah Rains; Jessica E Sepulveda; David A Joy; Todd C McDevitt
Journal:  Tissue Eng Part A       Date:  2019-05       Impact factor: 3.845

5.  Nanoparticle vesicle encoding for imaging and tracking cell populations.

Authors:  Paul Rees; John W Wills; M Rowan Brown; James Tonkin; Mark D Holton; Nicole Hondow; Andrew P Brown; Rik Brydson; Val Millar; Anne E Carpenter; Huw D Summers
Journal:  Nat Methods       Date:  2014-09-14       Impact factor: 28.547

6.  Use of a Machine Learning-Based High Content Analysis Approach to Identify Photoreceptor Neurite Promoting Molecules.

Authors:  John A Fuller; Cynthia A Berlinicke; James Inglese; Donald J Zack
Journal:  Adv Exp Med Biol       Date:  2016       Impact factor: 2.622

7.  N6-Furfuryladenine is protective in Huntington's disease models by signaling huntingtin phosphorylation.

Authors:  Laura E Bowie; Tamara Maiuri; Melanie Alpaugh; Michelle Gabriel; Nicolas Arbez; Danny Galleguillos; Claudia L K Hung; Shreya Patel; Jianrun Xia; Nicholas T Hertz; Christopher A Ross; David W Litchfield; Simonetta Sipione; Ray Truant
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-09       Impact factor: 11.205

8.  Rapid 3D phenotypic analysis of neurons and organoids using data-driven cell segmentation-free machine learning.

Authors:  Philipp Mergenthaler; Santosh Hariharan; James M Pemberton; Corey Lourenco; Linda Z Penn; David W Andrews
Journal:  PLoS Comput Biol       Date:  2021-02-22       Impact factor: 4.475

9.  Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes.

Authors:  Mark-Anthony Bray; Shantanu Singh; Han Han; Chadwick T Davis; Blake Borgeson; Cathy Hartland; Maria Kost-Alimova; Sigrun M Gustafsdottir; Christopher C Gibson; Anne E Carpenter
Journal:  Nat Protoc       Date:  2016-08-25       Impact factor: 13.491

Review 10.  Innovation in academic chemical screening: filling the gaps in chemical biology.

Authors:  Samuel A Hasson; James Inglese
Journal:  Curr Opin Chem Biol       Date:  2013-05-14       Impact factor: 8.822
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