Literature DB >> 22743535

Exceeding the limit of dynamics studies on biomolecules using high spin-lock field strengths with a cryogenically cooled probehead.

David Ban1, Alvar D Gossert, Karin Giller, Stefan Becker, Christian Griesinger, Donghan Lee.   

Abstract

Internal motions in the microsecond timescale have been proposed to play an active part in a protein's biological function. Nuclear magnetic resonance (NMR) relaxation dispersion is a robust method sensitive to this timescale with atomic resolution. However, due to technical limitations, the observation of motions faster than ∼40 μs for ¹⁵N nuclei was not possible. We show that with a cryogenically cooled NMR probehead, a high spin-lock field strength can be generated that is able to detect motions as fast as 25 μs. We apply this high spin-lock field strength in an NMR experiment used for characterizing dynamical processes. An on-resonance rotating-frame transverse relaxation experiment was implemented that allows for the detection of a 25 μs process from a dispersion curve, and transverse relaxation rates were compared at low and high spin-lock field strengths showing that at high field strengths contributions from chemical exchange with lifetimes up to 25 μs can be removed. Due to the increase in sensitivity towards fast motion, relaxation dispersion for a residue that undergoes smaller chemical shift variations due to dynamics was identified. This technique reduces the previously inaccessible window between the correlation time and the relaxation dispersion window that covers four orders of magnitude by a factor of 2.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22743535     DOI: 10.1016/j.jmr.2012.05.005

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  23 in total

1.  Population shuffling between ground and high energy excited states.

Authors:  T Michael Sabo; John O Trent; Donghan Lee
Journal:  Protein Sci       Date:  2015-10-15       Impact factor: 6.725

2.  Speeding-up exchange-mediated saturation transfer experiments by Fourier transform.

Authors:  Marta G Carneiro; Jithender G Reddy; Christian Griesinger; Donghan Lee
Journal:  J Biomol NMR       Date:  2015-09-09       Impact factor: 2.835

3.  NMR paves the way for atomic level descriptions of sparsely populated, transiently formed biomolecular conformers.

Authors:  Ashok Sekhar; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-18       Impact factor: 11.205

4.  Protein conformational exchange measured by 1H R1ρ relaxation dispersion of methyl groups.

Authors:  Ulrich Weininger; Annica T Blissing; Janosch Hennig; Alexandra Ahlner; Zhihong Liu; Hans J Vogel; Mikael Akke; Patrik Lundström
Journal:  J Biomol NMR       Date:  2013-08-02       Impact factor: 2.835

5.  Enhanced accuracy of kinetic information from CT-CPMG experiments by transverse rotating-frame spectroscopy.

Authors:  David Ban; Adam Mazur; Marta G Carneiro; T Michael Sabo; Karin Giller; Leonardus M I Koharudin; Stefan Becker; Angela M Gronenborn; Christian Griesinger; Donghan Lee
Journal:  J Biomol NMR       Date:  2013-08-15       Impact factor: 2.835

Review 6.  Chemical exchange in biomacromolecules: past, present, and future.

Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

7.  Allosteric switch regulates protein-protein binding through collective motion.

Authors:  Colin A Smith; David Ban; Supriya Pratihar; Karin Giller; Maria Paulat; Stefan Becker; Christian Griesinger; Donghan Lee; Bert L de Groot
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-09       Impact factor: 11.205

Review 8.  Characterizing micro-to-millisecond chemical exchange in nucleic acids using off-resonance R relaxation dispersion.

Authors:  Atul Rangadurai; Eric S Szymaski; Isaac J Kimsey; Honglue Shi; Hashim M Al-Hashimi
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2019-05-11       Impact factor: 9.795

9.  Simultaneous determination of fast and slow dynamics in molecules using extreme CPMG relaxation dispersion experiments.

Authors:  Jithender G Reddy; Supriya Pratihar; David Ban; Sebastian Frischkorn; Stefan Becker; Christian Griesinger; Donghan Lee
Journal:  J Biomol NMR       Date:  2017-11-29       Impact factor: 2.835

10.  Evaluating the uncertainty in exchange parameters determined from off-resonance R1ρ relaxation dispersion for systems in fast exchange.

Authors:  Jameson R Bothe; Zachary W Stein; Hashim M Al-Hashimi
Journal:  J Magn Reson       Date:  2014-04-20       Impact factor: 2.229

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