Literature DB >> 22740674

Genome sequence of the Shiga toxin-producing Escherichia coli strain NCCP15657.

Byung Kwon Kim1, Geun Cheol Song, Gun Hyong Hong, Won-Keun Seong, Seon-Young Kim, Haeyoung Jeong, Sung Gyun Kang, Soon-Kyeong Kwon, Choong Hoon Lee, Ju Yeon Song, Dong Su Yu, Mi-Sun Park, Seung-Hak Cho, Jihyun F Kim.   

Abstract

Shiga toxin-producing Escherichia coli causes bloody diarrhea and hemolytic-uremic syndrome and serious outbreaks worldwide. Here, we report the draft genome sequence of E. coli NCCP15657 isolated from a patient. The genome has virulence genes, many in the locus of enterocyte effacement (LEE) island, encoding a metalloprotease, the Shiga toxin, and constituents of type III secretion.

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Year:  2012        PMID： 22740674      PMCID： PMC3393477          DOI： 10.1128/JB.00654-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

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Authors:  Marten Boetzer; Christiaan V Henkel; Hans J Jansen; Derek Butler; Walter Pirovano
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2.  Recent progress of microbial genome projects in Korea.

Authors:  Haeyoung Jeong; Sung Ho Yoon; Dong-Su Yu; Tae-Kwang Oh; Jihyun F Kim
Journal:  Biotechnol J       Date:  2008-05       Impact factor: 4.677

3.  Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps.

Authors:  Isheng J Tsai; Thomas D Otto; Matthew Berriman
Journal:  Genome Biol       Date:  2010-04-13       Impact factor: 13.583

4.  Detection of Shiga toxin-producing Escherichia coli serotypes O26:H11, O103:H2, O111:H8, O145:H28, and O157:H7 in raw-milk cheeses by using multiplex real-time PCR.

Authors:  Jordan Madic; Noémie Vingadassalon; Carine Peytavin de Garam; Muriel Marault; Flemming Scheutz; Hubert Brugère; Emmanuel Jamet; Frédéric Auvray
Journal:  Appl Environ Microbiol       Date:  2011-01-14       Impact factor: 4.792

5.  Surveillance of bacterial pathogens associated with acute diarrheal disease in the Republic of Korea during one year, 2003.

Authors:  Seung-Hak Cho; Jong-Hyun Kim; Jong-Chul Kim; Hyun-Ho Shin; Yeon-Ho Kang; Bok-Kwon Lee
Journal:  J Microbiol       Date:  2006-06       Impact factor: 3.422

6.  Clonal relationships among Escherichia coli strains that cause hemorrhagic colitis and infantile diarrhea.

Authors:  T S Whittam; M L Wolfe; I K Wachsmuth; F Orskov; I Orskov; R A Wilson
Journal:  Infect Immun       Date:  1993-05       Impact factor: 3.441

7.  Shifting the genomic gold standard for the prokaryotic species definition.

Authors:  Michael Richter; Ramon Rosselló-Móra
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-23       Impact factor: 11.205

8.  Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli.

Authors:  Yoshitoshi Ogura; Tadasuke Ooka; Atsushi Iguchi; Hidehiro Toh; Md Asadulghani; Kenshiro Oshima; Toshio Kodama; Hiroyuki Abe; Keisuke Nakayama; Ken Kurokawa; Toru Tobe; Masahira Hattori; Tetsuya Hayashi
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-06       Impact factor: 11.205

9.  Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology.

Authors:  Alexander Mellmann; Dag Harmsen; Craig A Cummings; Emily B Zentz; Shana R Leopold; Alain Rico; Karola Prior; Rafael Szczepanowski; Yongmei Ji; Wenlan Zhang; Stephen F McLaughlin; John K Henkhaus; Benjamin Leopold; Martina Bielaszewska; Rita Prager; Pius M Brzoska; Richard L Moore; Simone Guenther; Jonathan M Rothberg; Helge Karch
Journal:  PLoS One       Date:  2011-07-20       Impact factor: 3.240

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  3 in total

1.  Genome sequences of the Shiga-like toxin-producing Escherichia coli NCCP15655 and NCCP15656.

Authors:  Min-Jung Kwak; Soon-Kyeong Kwon; Seung-Hak Cho; Jihyun F Kim
Journal:  Gut Pathog       Date:  2015-05-12       Impact factor: 4.181

2.  Genome sequence of Escherichia coli NCCP15653, a group D strain isolated from a diarrhea patient.

Authors:  Min-Jung Kwak; Myung-Soo Kim; Soon-Kyeong Kwon; Seung-Hak Cho; Jihyun F Kim
Journal:  Gut Pathog       Date:  2016-02-23       Impact factor: 4.181

3.  Comparative genomic analysis of enterotoxigenic Escherichia coli O159 strains isolated from diarrheal patients in Korea.

Authors:  Si-Yun Chung; Taesoo Kwon; Seung-Hak Cho; Won Kim; Young-Seok Bak; Joung Je Park; Cheorl-Ho Kim
Journal:  Gut Pathog       Date:  2019-02-21       Impact factor: 4.181
  3 in total

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