Literature DB >> 22740667

Draft genome sequence of Gillisia sp. strain CBA3202, a novel member of the genus Gillisia, which belongs to the family Flavobacteriaceae.

Young-Do Nam1, Hae-Won Lee, Myunglip Lee, Kyung June Yim, Kil-Nam Kim, Seong Woon Roh, Daekyung Kim.   

Abstract

Gillisia sp. strain CBA3202, which belongs to the family Flavobacteriaceae, was isolated from sand of the seashore on Jeju Island, Republic of Korea. The draft genome of Gillisia sp. CBA3202 contains 2,981,404 bp with a G+C content of 34.9%. This is the second genome sequence of the Gillisia strains.

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Year:  2012        PMID： 22740667      PMCID： PMC3393490          DOI： 10.1128/JB.00631-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  8 in total

1.  Gillisia mitskevichiae sp. nov., a novel bacterium of the family Flavobacteriaceae, isolated from sea water.

Authors:  Olga I Nedashkovskaya; Seung Bum Kim; Kang Hyun Lee; Valery V Mikhailov; Kyung Sook Bae
Journal:  Int J Syst Evol Microbiol       Date:  2005-01       Impact factor: 2.747

2.  An integrated semiconductor device enabling non-optical genome sequencing.

Authors:  Jonathan M Rothberg; Wolfgang Hinz; Todd M Rearick; Jonathan Schultz; William Mileski; Mel Davey; John H Leamon; Kim Johnson; Mark J Milgrew; Matthew Edwards; Jeremy Hoon; Jan F Simons; David Marran; Jason W Myers; John F Davidson; Annika Branting; John R Nobile; Bernard P Puc; David Light; Travis A Clark; Martin Huber; Jeffrey T Branciforte; Isaac B Stoner; Simon E Cawley; Michael Lyons; Yutao Fu; Nils Homer; Marina Sedova; Xin Miao; Brian Reed; Jeffrey Sabina; Erika Feierstein; Michelle Schorn; Mohammad Alanjary; Eileen Dimalanta; Devin Dressman; Rachel Kasinskas; Tanya Sokolsky; Jacqueline A Fidanza; Eugeni Namsaraev; Kevin J McKernan; Alan Williams; G Thomas Roth; James Bustillo
Journal:  Nature       Date:  2011-07-20       Impact factor: 49.962

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia.

Authors:  John P Bowman; David S Nichols
Journal:  Int J Syst Evol Microbiol       Date:  2005-07       Impact factor: 2.747

5.  Gillisia myxillae sp. nov., a novel member of the family Flavobacteriaceae, isolated from the marine sponge Myxilla incrustans.

Authors:  On On Lee; Stanley C K Lau; Mandy M Y Tsoi; Xiancui Li; Ioulia Plakhotnikova; Sergey Dobretsov; Madeline C S Wu; Po-Keung Wong; Pei-Yuan Qian
Journal:  Int J Syst Evol Microbiol       Date:  2006-08       Impact factor: 2.747

6.  Gillisia limnaea gen. nov., sp. nov., a new member of the family Flavobacteriaceae isolated from a microbial mat in Lake Fryxell, Antarctica.

Authors:  Stefanie Van Trappen; Ilse Vandecandelaere; Joris Mergaert; Jean Swings
Journal:  Int J Syst Evol Microbiol       Date:  2004-03       Impact factor: 2.747

7.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

8.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  8 in total
  2 in total

1.  Phenotypic and genomic characterization of the Antarctic bacterium Gillisia sp. CAL575, a producer of antimicrobial compounds.

Authors:  Isabel Maida; Marco Fondi; Maria Cristiana Papaleo; Elena Perrin; Valerio Orlandini; Giovanni Emiliani; Donatella de Pascale; Ermenegilda Parrilli; Maria Luisa Tutino; Luigi Michaud; Angelina Lo Giudice; Riccardo Romoli; Gianluca Bartolucci; Renato Fani
Journal:  Extremophiles       Date:  2013-10-23       Impact factor: 2.395

2.  Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)).

Authors:  Thomas Riedel; Brittany Held; Matt Nolan; Susan Lucas; Alla Lapidus; Hope Tice; Tijana Glavina Del Rio; Jan-Fang Cheng; Cliff Han; Roxanne Tapia; Lynne A Goodwin; Sam Pitluck; Konstantinos Liolios; Konstantinos Mavromatis; Ioanna Pagani; Natalia Ivanova; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Manfred Rohde; Brian J Tindall; John C Detter; Markus Göker; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C Kyrpides; Hans-Peter Klenk; Tanja Woyke
Journal:  Stand Genomic Sci       Date:  2012-10-10
  2 in total

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