Literature DB >> 22740666

Draft genome sequence of Pedobacter agri PB92T, which belongs to the family Sphingobacteriaceae.

Myunglip Lee1, Seong Woon Roh, Hae-Won Lee, Kyung June Yim, Kil-Nam Kim, Jin-Woo Bae, Kwang-Sik Choi, You-Jin Jeon, Won-Kyo Jung, Heewan Kang, Chang-Gu Hyun, Daekyung Kim.   

Abstract

Strain PB92(T) of Pedobacter agri, which belongs to the family Sphingobacteriaceae, was isolated from soil in the Republic of Korea. The draft genome of strain PB92(T) contains 5,141,552 bp, with a G+C content of 38.0%. This is the third genome sequencing project of the type strains among the Pedobacter species.

Entities:  

Mesh：

Year:  2012        PMID： 22740666      PMCID： PMC3393511          DOI： 10.1128/JB.00627-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

2.  Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. proposal of the family Sphingobacteriaceae fam. nov.

Authors:  P L Steyn; P Segers; M Vancanneyt; P Sandra; K Kersters; J J Joubert
Journal:  Int J Syst Bacteriol       Date:  1998-01

3.  Pedobacter himalayensis sp. nov., from the Hamta glacier located in the Himalayan mountain ranges of India.

Authors:  S Shivaji; P Chaturvedi; G S N Reddy; K Suresh
Journal:  Int J Syst Evol Microbiol       Date:  2005-05       Impact factor: 2.747

4.  Pedobacter agri sp. nov., from soil.

Authors:  Seong Woon Roh; Zhe-Xue Quan; Young-Do Nam; Ho-Won Chang; Kyoung-Ho Kim; Myung-Kyum Kim; Wan-Taek Im; Long Jin; Seung-Hye Kim; Sung-Taik Lee; Jin-Woo Bae
Journal:  Int J Syst Evol Microbiol       Date:  2008-07       Impact factor: 2.747

5.  Pedobacter nyackensis sp. nov., Pedobacter alluvionis sp. nov. and Pedobacter borealis sp. nov., isolated from Montana flood-plain sediment and forest soil.

Authors:  Nathan S Gordon; Alejandra Valenzuela; Sandra M Adams; Philip W Ramsey; Jarrod L Pollock; William E Holben; James E Gannon
Journal:  Int J Syst Evol Microbiol       Date:  2009-06-19       Impact factor: 2.747

6.  Pedobacter tournemirensis sp. nov., isolated from a fault water sample of a deep Toarcian argillite layer.

Authors:  Laurent Urios; Laurent Intertaglia; Michel Magot
Journal:  Int J Syst Evol Microbiol       Date:  2012-03-16       Impact factor: 2.747

7.  Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3).

Authors:  Cliff Han; Stefan Spring; Alla Lapidus; Tijana Glavina Del Rio; Hope Tice; Alex Copeland; Jan-Fang Cheng; Susan Lucas; Feng Chen; Matt Nolan; David Bruce; Lynne Goodwin; Sam Pitluck; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia C Jeffries; Elizabeth Saunders; Olga Chertkov; Thomas Brettin; Markus Göker; Manfred Rohde; Jim Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C Kyrpides; Hans-Peter Klenk; John C Detter
Journal:  Stand Genomic Sci       Date:  2009-07-20

8.  Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113).

Authors:  Konstantinos Liolios; Johannes Sikorski; Meagan Lu; Matt Nolan; Alla Lapidus; Susan Lucas; Nancy Hammon; Shweta Deshpande; Jan-Fang Cheng; Roxanne Tapia; Cliff Han; Lynne Goodwin; Sam Pitluck; Marcel Huntemann; Natalia Ivanova; Ioanna Pagani; Konstantinos Mavromatis; Galina Ovchinikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Evelyne-Marie Brambilla; Oleg Kotsyurbenko; Manfred Rohde; Brian J Tindall; Birte Abt; Markus Göker; John C Detter; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk; Nikos C Kyrpides
Journal:  Stand Genomic Sci       Date:  2011-09-23

9.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
View more
  1 in total

1.  Streptomyces sp. strain TOR3209: a rhizosphere bacterium promoting growth of tomato by affecting the rhizosphere microbial community.

Authors:  Dong Hu; Shuhong Li; Ying Li; Jieli Peng; Xiaoyan Wei; Jia Ma; Cuimian Zhang; Nan Jia; Entao Wang; Zhanwu Wang
Journal:  Sci Rep       Date:  2020-11-18       Impact factor: 4.379
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.