Literature DB >> 22740345

Imaging flow cytometry: coping with heterogeneity in biological systems.

Natasha S Barteneva1, Elizaveta Fasler-Kan, Ivan A Vorobjev.   

Abstract

Imaging flow cytometry (IFC) platforms combine features of flow cytometry and fluorescent microscopy with advances in data-processing algorithms. IFC allows multiparametric fluorescent and morphological analysis of thousands of cellular events and has the unique capability of identifying collected events by their real images. IFC allows the analysis of heterogeneous cell populations, where one of the cellular components has low expression (<0.03%) and can be described by Poisson distribution. With the help of IFC, one can address a critical question of statistical analysis of subcellular distribution of proteins in a cell. Here the authors review advantages of IFC in comparison with more traditional technologies, such as Western blotting and flow cytometry (FC), as well as new high-throughput fluorescent microscopy (HTFM), and discuss further developments of this novel analytical technique.

Mesh:

Year:  2012        PMID: 22740345      PMCID: PMC3524563          DOI: 10.1369/0022155412453052

Source DB:  PubMed          Journal:  J Histochem Cytochem        ISSN: 0022-1554            Impact factor:   2.479


  93 in total

Review 1.  Analysis of apoptosis by laser scanning cytometry.

Authors:  E Bedner; X Li; W Gorczyca; M R Melamed; Z Darzynkiewicz
Journal:  Cytometry       Date:  1999-03-01

2.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

3.  In situ end-labelling detects DNA strand breaks in apoptosis and other physiological and pathological states.

Authors:  B Ansari; P J Coates; B D Greenstein; P A Hall
Journal:  J Pathol       Date:  1993-05       Impact factor: 7.996

4.  Interaction of yeast importin alpha with the NLS of prothymosin alpha is insufficient to trigger nuclear uptake of cargos.

Authors:  V R Shakulov; I A Vorobjev; Y P Rubtsov; N V Chichkova; A B Vartapetian
Journal:  Biochem Biophys Res Commun       Date:  2000-08-02       Impact factor: 3.575

5.  Novel mutations in the inhibitory adaptor protein LNK drive JAK-STAT signaling in patients with myeloproliferative neoplasms.

Authors:  Stephen T Oh; Erin F Simonds; Carol Jones; Matthew B Hale; Yury Goltsev; Kenneth D Gibbs; Jason D Merker; James L Zehnder; Garry P Nolan; Jason Gotlib
Journal:  Blood       Date:  2010-04-19       Impact factor: 22.113

6.  Brilliant violet fluorophores: a new class of ultrabright fluorescent compounds for immunofluorescence experiments.

Authors:  Pratip K Chattopadhyay; Brent Gaylord; Adrian Palmer; Nan Jiang; Mary A Raven; Geoff Lewis; Morgan A Reuter; A K M Nur-ur Rahman; David A Price; Michael R Betts; Mario Roederer
Journal:  Cytometry A       Date:  2012-04-06       Impact factor: 4.355

7.  Fc block treatment, dead cells exclusion, and cell aggregates discrimination concur to prevent phenotypical artifacts in the analysis of subpopulations of tumor-infiltrating CD11b(+) myelomonocytic cells.

Authors:  Francois Kuonen; Cedric Touvrey; Julien Laurent; Curzio Ruegg
Journal:  Cytometry A       Date:  2010-11       Impact factor: 4.355

8.  Cell cycle effects and induction of apoptosis caused by infection of HL-60 cells with human granulocytic ehrlichiosis pathogen measured by flow and laser scanning cytometry.

Authors:  E Bedner; P Burfeind; T C Hsieh; J M Wu; M E Aguero-Rosenfeld; M R Melamed; H W Horowitz; G P Wormser; Z Darzynkiewicz
Journal:  Cytometry       Date:  1998-09-01

9.  Fetal liver very small embryonic/epiblast like stem cells follow developmental migratory pathway of hematopoietic stem cells.

Authors:  Ewa K Zuba-Surma; Magda Kucia; Liu Rui; Dong-Myung Shin; Wojtek Wojakowski; Janina Ratajczak; Mariusz Z Ratajczak
Journal:  Ann N Y Acad Sci       Date:  2009-09       Impact factor: 5.691

10.  Antibody colocalization microarray: a scalable technology for multiplex protein analysis in complex samples.

Authors:  M Pla-Roca; R F Leulmi; S Tourekhanova; S Bergeron; V Laforte; E Moreau; S J C Gosline; N Bertos; M Hallett; M Park; D Juncker
Journal:  Mol Cell Proteomics       Date:  2011-12-14       Impact factor: 5.911

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  35 in total

1.  Subcellular localization-dependent changes in EGFP fluorescence lifetime measured by time-resolved flow cytometry.

Authors:  Ali Vaziri Gohar; Ruofan Cao; Patrick Jenkins; Wenyan Li; Jessica P Houston; Kevin D Houston
Journal:  Biomed Opt Express       Date:  2013-07-19       Impact factor: 3.732

2.  Myogenic progenitors and imaging single-cell flow analysis: a model to study commitment of adult muscle stem cells.

Authors:  Martin Trapecar; Robi Kelc; Lidija Gradisnik; Matjaz Vogrin; Marjan Slak Rupnik
Journal:  J Muscle Res Cell Motil       Date:  2014-11-08       Impact factor: 2.698

Review 3.  Imaging flow cytometry analysis of intracellular pathogens.

Authors:  Viraga Haridas; Shahin Ranjbar; Ivan A Vorobjev; Anne E Goldfeld; Natasha S Barteneva
Journal:  Methods       Date:  2016-09-15       Impact factor: 3.608

Review 4.  Flow Cytometry: An Overview.

Authors:  Katherine M McKinnon
Journal:  Curr Protoc Immunol       Date:  2018-02-21

5.  Imaging Flow Cytometry Illuminates New Dimensions of Amyloid Peptide-Membrane Interactions.

Authors:  Reut Israeli; Sofiya Kolusheva; Uzi Hadad; Raz Jelinek
Journal:  Biophys J       Date:  2020-01-28       Impact factor: 4.033

Review 6.  Review: imaging technologies for flow cytometry.

Authors:  Yuanyuan Han; Yi Gu; Alex Ce Zhang; Yu-Hwa Lo
Journal:  Lab Chip       Date:  2016-11-29       Impact factor: 6.799

7.  Precise quantification of nanoparticle internalization.

Authors:  Claudia Gottstein; Guohui Wu; Benjamin J Wong; Joseph Anthony Zasadzinski
Journal:  ACS Nano       Date:  2013-06-03       Impact factor: 15.881

8.  The Detailed Comparison of Cell Death Detected by Annexin V-PI Counterstain Using Fluorescence Microscope, Flow Cytometry and Automated Cell Counter in Mammalian and Microalgae Cells.

Authors:  Emine Koç; Selcen Çelik-Uzuner; Uğur Uzuner; Ramazan Çakmak
Journal:  J Fluoresc       Date:  2018-10-21       Impact factor: 2.217

Review 9.  Detection of Rare Objects by Flow Cytometry: Imaging, Cell Sorting, and Deep Learning Approaches.

Authors:  Denis V Voronin; Anastasiia A Kozlova; Roman A Verkhovskii; Alexey V Ermakov; Mikhail A Makarkin; Olga A Inozemtseva; Daniil N Bratashov
Journal:  Int J Mol Sci       Date:  2020-03-27       Impact factor: 5.923

10.  A flow cytometry-based method to simplify the analysis and quantification of protein association to chromatin in mammalian cells.

Authors:  Josep V Forment; Stephen P Jackson
Journal:  Nat Protoc       Date:  2015-07-30       Impact factor: 13.491

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