Literature DB >> 22733880

Complete genome sequence of a new circular DNA virus from grapevine.

Björn Krenz1, Jeremy R Thompson, Marc Fuchs, Keith L Perry.   

Abstract

A novel circular DNA virus sequence is reported from grapevine. The corresponding genomic organization, coding potential, and conserved origin of replication are similar to those of members of the family Geminiviridae, but the genome of 3,206 nucleotides is 4% larger than the largest reported geminiviral genome and shares only 50% overall sequence identity.

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Year:  2012        PMID： 22733880      PMCID： PMC3416304          DOI： 10.1128/JVI.00943-12

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  5 in total

1.  Rolling circle amplification revolutionizes diagnosis and genomics of geminiviruses.

Authors:  Daniela Haible; Sigrid Kober; Holger Jeske
Journal:  J Virol Methods       Date:  2006-02-28       Impact factor: 2.014

Review 2.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

3.  Association of a novel DNA virus with the grapevine vein-clearing and vine decline syndrome.

Authors:  Yu Zhang; Kashmir Singh; Ravneet Kaur; Wenping Qiu
Journal:  Phytopathology       Date:  2011-09       Impact factor: 4.025

4.  Splicing features in maize streak virus virion- and complementary-sense gene expression.

Authors:  E A Wright; T Heckel; J Groenendijk; J W Davies; M I Boulton
Journal:  Plant J       Date:  1997-12       Impact factor: 6.417

5.  Horseradish curly top virus is a distinct subgroup II geminivirus species with rep and C4 genes derived from a subgroup III ancestor.

Authors:  K A Klute; S A Nadler; D C Stenger
Journal:  J Gen Virol       Date:  1996-07       Impact factor: 3.891
  5 in total
  18 in total

1.  Subcellular localization of grapevine red blotch-associated virus ORFs V2 and V3.

Authors:  Tai Wei Guo; Deluxsika Vimalesvaran; Jeremy R Thompson; Keith L Perry; Björn Krenz
Journal:  Virus Genes       Date:  2015-06-11       Impact factor: 2.332

2.  Splicing features in the expression of the complementary-sense genes of Beet curly top Iran virus.

Authors:  Naghmeh Bozorgi; Jahangir Heydarnejad; Mehdi Kamali; Hossain Massumi
Journal:  Virus Genes       Date:  2016-12-21       Impact factor: 2.332

3.  Analysis of watermelon chlorotic stunt virus and tomato leaf curl Palampur virus mixed and pseudo-recombination infections.

Authors:  Maryam Esmaeili; Jahangir Heydarnejad; Hossain Massumi; Arvind Varsani
Journal:  Virus Genes       Date:  2015-10-03       Impact factor: 2.332

4.  Complete nucleotide sequence of a new geminivirus isolated from Vitis vinifera in India: a symptomless host of Grapevine red blotch virus.

Authors:  Avinash Marwal; Rajesh Kumar; S M Paul Khurana; R K Gaur
Journal:  Virusdisease       Date:  2018-07-17

5.  Diversity of beet curly top Iran virus isolated from different hosts in Iran.

Authors:  Sara Gharouni Kardani; Jahangir Heydarnejad; Mohammad Zakiaghl; Mohsen Mehrvar; Simona Kraberger; Arvind Varsani
Journal:  Virus Genes       Date:  2013-01-18       Impact factor: 2.332

6.  Genetic diversity and host range studies of turnip curly top virus.

Authors:  Sara Razavinejad; Jahangir Heydarnejad; Mehdi Kamali; Hossain Massumi; Simona Kraberger; Arvind Varsani
Journal:  Virus Genes       Date:  2012-12-09       Impact factor: 2.332

7.  A highly effective and versatile technology for the isolation of RNAs from grapevines and other woody perennials for use in virus diagnostics.

Authors:  Huogen Xiao; Won-Sik Kim; Baozhong Meng
Journal:  Virol J       Date:  2015-10-20       Impact factor: 4.099

8.  A leafhopper-transmissible DNA virus with novel evolutionary lineage in the family geminiviridae implicated in grapevine redleaf disease by next-generation sequencing.

Authors:  Sudarsana Poojari; Olufemi J Alabi; Viacheslav Y Fofanov; Rayapati A Naidu
Journal:  PLoS One       Date:  2013-06-05       Impact factor: 3.240

9.  De novo reconstruction of consensus master genomes of plant RNA and DNA viruses from siRNAs.

Authors:  Jonathan Seguin; Rajendran Rajeswaran; Nachelli Malpica-López; Robert R Martin; Kristin Kasschau; Valerian V Dolja; Patricia Otten; Laurent Farinelli; Mikhail M Pooggin
Journal:  PLoS One       Date:  2014-02-11       Impact factor: 3.240

10.  Relative Prevalence of Grapevine Leafroll-Associated Virus Species in Wine Grape-Growing Regions of California.

Authors:  Abhineet M Sharma; Breanna Baraff; John T Hutchins; Michelle K Wong; G Kai Blaisdell; Monica L Cooper; Kent M Daane; Rodrigo P P Almeida
Journal:  PLoS One       Date:  2015-11-03       Impact factor: 3.240
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