Literature DB >> 22731865

Case study of empirical and computational chemical shift analyses: reassignment of the relative configuration of phomopsichalasin to that of diaporthichalasin.

Susan G Brown1, Matthew J Jansma, Thomas R Hoye.   

Abstract

Phomopsichalasin was isolated and assigned structure 1 over 15 years ago. Analysis of its proton NMR data led us to hypothesize that not all aspects of the relative configuration of this structure were correct. We have used both empirical and computational methods to propose an alternative structure. Diaporthichalasin was reported several years ago, and its structure was assigned as 7, a diastereomer of structure 1, and confirmed by a single-crystal X-ray study. We have shown that diaporthichalasin and phomopsichalasin are identical; that is, both have structure 7. Additional aspects of NMR interpretation that provide guidance for avoiding some of the pitfalls that can lead to incorrect structure assignments are discussed. These recommendations/reminders include (i) the use of complementary solvents for acquiring NMR data that break accidental chemical shift degeneracy, (ii) the importance of assigning coupling constants as extensively as possible, and (iii) exercising caution when interpreting correlations in 2D spectra where overlapping resonances are involved.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22731865      PMCID: PMC3428957          DOI: 10.1021/np300248w

Source DB:  PubMed          Journal:  J Nat Prod        ISSN: 0163-3864            Impact factor:   4.050


  11 in total

1.  Assigning stereochemistry to single diastereoisomers by GIAO NMR calculation: the DP4 probability.

Authors:  Steven G Smith; Jonathan M Goodman
Journal:  J Am Chem Soc       Date:  2010-09-22       Impact factor: 15.419

2.  Structural reassignment of obtusallenes V, VI, and VII by GIAO-based density functional prediction.

Authors:  D Christopher Braddock; Henry S Rzepa
Journal:  J Nat Prod       Date:  2008-02-23       Impact factor: 4.050

3.  Density functionals with broad applicability in chemistry.

Authors:  Yan Zhao; Donald G Truhlar
Journal:  Acc Chem Res       Date:  2008-01-11       Impact factor: 22.384

4.  Calculating accurate proton chemical shifts of organic molecules with density functional methods and modest basis sets.

Authors:  Rupal Jain; Thomas Bally; Paul R Rablen
Journal:  J Org Chem       Date:  2009-06-05       Impact factor: 4.354

5.  First natural analogs of the cytotoxic thiodepsipeptide thiocoraline A from a marine Verrucosispora sp.

Authors:  Thomas P Wyche; Yanpeng Hou; Doug Braun; Hannah C Cohen; May P Xiong; Tim S Bugni
Journal:  J Org Chem       Date:  2011-07-20       Impact factor: 4.354

6.  Leiodermatolide, a potent antimitotic macrolide from the marine sponge Leiodermatium sp.

Authors:  Ian Paterson; Stephen M Dalby; Jill C Roberts; Guy J Naylor; Esther A Guzmán; Richard Isbrucker; Tara P Pitts; Pat Linley; Daniela Divlianska; John K Reed; Amy E Wright
Journal:  Angew Chem Int Ed Engl       Date:  2011-03-04       Impact factor: 15.336

7.  Prediction of the structure of nobilisitine a using computed NMR chemical shifts.

Authors:  Michael W Lodewyk; Dean J Tantillo
Journal:  J Nat Prod       Date:  2011-04-06       Impact factor: 4.050

8.  Concise Preparation of Novel Tricyclic Chemotypes: Fused Hydantoin-benzodiazepines.

Authors:  Steven Gunawan; Gary S Nichol; Shashi Chappeta; Justin Dietrich; Christopher Hulme
Journal:  Tetrahedron Lett       Date:  2010-09-08       Impact factor: 2.415

9.  Density functional theory calculation of 13C NMR shifts of diazaphenanthrene alkaloids: reinvestigation of the structure of samoquasine A.

Authors:  Cody Timmons; Peter Wipf
Journal:  J Org Chem       Date:  2008-10-17       Impact factor: 4.354

10.  Hybrid Density Functional Methods Empirically Optimized for the Computation of (13)C and (1)H Chemical Shifts in Chloroform Solution.

Authors:  Keith W Wiitala; Thomas R Hoye; Christopher J Cramer
Journal:  J Chem Theory Comput       Date:  2006-07       Impact factor: 6.006

View more
  8 in total

1.  Analysis of seven-membered lactones by computational NMR methods: proton NMR chemical shift data are more discriminating than carbon.

Authors:  Daniel J Marell; Susanna J Emond; Aman Kulshrestha; Thomas R Hoye
Journal:  J Org Chem       Date:  2014-01-06       Impact factor: 4.354

2.  Navigating the fungal polyketide chemical space: from genes to molecules.

Authors:  Yit-Heng Chooi; Yi Tang
Journal:  J Org Chem       Date:  2012-09-13       Impact factor: 4.354

3.  Progress in the Chemistry of Cytochalasans.

Authors:  Hucheng Zhu; Chunmei Chen; Qingyi Tong; Yuan Zhou; Ying Ye; Lianghu Gu; Yonghui Zhang
Journal:  Prog Chem Org Nat Prod       Date:  2021

4.  A guide to small-molecule structure assignment through computation of (¹H and ¹³C) NMR chemical shifts.

Authors:  Patrick H Willoughby; Matthew J Jansma; Thomas R Hoye
Journal:  Nat Protoc       Date:  2014-02-20       Impact factor: 13.491

5.  Stereochemical Studies of the Karlotoxin Class Using NMR Spectroscopy and DP4 Chemical-Shift Analysis: Insights into their Mechanism of Action.

Authors:  Amanda L Waters; Joonseok Oh; Allen R Place; Mark T Hamann
Journal:  Angew Chem Int Ed Engl       Date:  2015-11-16       Impact factor: 15.336

6.  Isolation and Total Synthesis of Stolonines A-C, Unique Taurine Amides from the Australian Marine Tunicate Cnemidocarpa stolonifera.

Authors:  Trong D Tran; Ngoc B Pham; Merrick Ekins; John N A Hooper; Ronald J Quinn
Journal:  Mar Drugs       Date:  2015-07-22       Impact factor: 5.118

7.  Oxygenated Theonellastrols: Interpretation of Unusual Chemical Behaviors Using Quantum Mechanical Calculations and Stereochemical Reassignment of 7α-Hydroxytheonellasterol.

Authors:  A-Young Shin; Hyi-Seung Lee; Yeon-Ju Lee; Jong Seok Lee; Arang Son; Changhoon Choi; Jihoon Lee
Journal:  Mar Drugs       Date:  2020-11-30       Impact factor: 5.118

8.  An automated framework for NMR chemical shift calculations of small organic molecules.

Authors:  Yasemin Yesiltepe; Jamie R Nuñez; Sean M Colby; Dennis G Thomas; Mark I Borkum; Patrick N Reardon; Nancy M Washton; Thomas O Metz; Justin G Teeguarden; Niranjan Govind; Ryan S Renslow
Journal:  J Cheminform       Date:  2018-10-26       Impact factor: 5.514

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.