Literature DB >> 19435298

Calculating accurate proton chemical shifts of organic molecules with density functional methods and modest basis sets.

Rupal Jain1, Thomas Bally, Paul R Rablen.   

Abstract

The purpose of this paper is to convince practitioners of (1)H NMR spectroscopy to consider simple quantum chemical calculations as a viable option to aid them in the assignment of their spectra. To this end, it is demonstrated, on a test set of 80 conformationally stable molecules of various kinds carrying different functional groups, that, in contrast to what is claimed in the literature, large basis sets are not needed to obtain rather accurate predictions of (1)H NMR chemical shifts by quantum chemical calculations. On the other hand, modeling the solvent by an SCRF-type calculation may improve certain predictions significantly. The best accuracy/cost ratio is provided by GIAO calculations in chloroform as a solvent with the specially parametrized WP04 functional of Cramer et al. using the cc-pVDZ or 6-31G** basis set, closely followed by similar calculations with the ubiquitious B3LYP functional (both predict (1)H chemical shifts with an average deviation of ca. 0.12 ppm, if the results are scaled linearly). A slightly higher accuracy can be attained by adding diffuse functions to the basis set, but going to the triple-zeta basis sets which have invariably been used hitherto in calculations of chemical shifts does not lead to any improvement. The popular increment schemes such as those implemented in the ChemDraw or ACD programs do not do nearly as well and are often incapable of correctly distinguishing stereoisomers.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19435298     DOI: 10.1021/jo900482q

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.354


  30 in total

1.  Critical test of some computational methods for prediction of NMR ¹H and ¹³C chemical shifts.

Authors:  Eve Toomsalu; Peeter Burk
Journal:  J Mol Model       Date:  2015-08-29       Impact factor: 1.810

2.  Converging nuclear magnetic shielding calculations with respect to basis and system size in protein systems.

Authors:  Joshua D Hartman; Thomas J Neubauer; Bethany G Caulkins; Leonard J Mueller; Gregory J O Beran
Journal:  J Biomol NMR       Date:  2015-05-21       Impact factor: 2.835

3.  Simulation of NMR chemical shifts in heterocycles: a method evaluation.

Authors:  Alexander Buß; Rainer Koch
Journal:  J Mol Model       Date:  2016-12-16       Impact factor: 1.810

4.  Case study of empirical and computational chemical shift analyses: reassignment of the relative configuration of phomopsichalasin to that of diaporthichalasin.

Authors:  Susan G Brown; Matthew J Jansma; Thomas R Hoye
Journal:  J Nat Prod       Date:  2012-06-25       Impact factor: 4.050

5.  Spectroscopic and quantum mechanical investigation of N,N'-bisarylmalonamides: solvent and structural effects.

Authors:  Violeta M Arsovski; Bojan Đ Božić; Jelena M Mirković; Vesna D Vitnik; Zeljko J Vitnik; Walter M F Fabian; Slobodan D Petrović; Dušan Z Mijin
Journal:  J Mol Model       Date:  2014-08-14       Impact factor: 1.810

6.  Analysis of seven-membered lactones by computational NMR methods: proton NMR chemical shift data are more discriminating than carbon.

Authors:  Daniel J Marell; Susanna J Emond; Aman Kulshrestha; Thomas R Hoye
Journal:  J Org Chem       Date:  2014-01-06       Impact factor: 4.354

7.  A non-Karplus effect: evidence from phosphorus heterocycles and DFT calculations of the dependence of vicinal phosphorus-hydrogen NMR coupling constants on lone-pair conformation.

Authors:  William H Hersh; Sherrell T Lam; Daniel J Moskovic; Antonios J Panagiotakis
Journal:  J Org Chem       Date:  2012-05-23       Impact factor: 4.354

8.  Theoretical investigation of loratadine reactivity in order to understand its degradation properties: DFT and MD study.

Authors:  Stevan Armaković; Sanja J Armaković; Biljana F Abramović
Journal:  J Mol Model       Date:  2016-09-17       Impact factor: 1.810

9.  A guide to small-molecule structure assignment through computation of (¹H and ¹³C) NMR chemical shifts.

Authors:  Patrick H Willoughby; Matthew J Jansma; Thomas R Hoye
Journal:  Nat Protoc       Date:  2014-02-20       Impact factor: 13.491

10.  Using quantum chemical computations of NMR chemical shifts to assign relative configurations of terpenes from an engineered Streptomyces host.

Authors:  Q Nhu N Nguyen; Dean J Tantillo
Journal:  J Antibiot (Tokyo)       Date:  2016-05-18       Impact factor: 2.649

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.