Literature DB >> 22728304

Detecting outliers in high-dimensional neuroimaging datasets with robust covariance estimators.

Virgile Fritsch1, Gaël Varoquaux, Benjamin Thyreau, Jean-Baptiste Poline, Bertrand Thirion.   

Abstract

Medical imaging datasets often contain deviant observations, the so-called outliers, due to acquisition or preprocessing artifacts or resulting from large intrinsic inter-subject variability. These can undermine the statistical procedures used in group studies as the latter assume that the cohorts are composed of homogeneous samples with anatomical or functional features clustered around a central mode. The effects of outlying subjects can be mitigated by detecting and removing them with explicit statistical control. With the emergence of large medical imaging databases, exhaustive data screening is no longer possible, and automated outlier detection methods are currently gaining interest. The datasets used in medical imaging are often high-dimensional and strongly correlated. The outlier detection procedure should therefore rely on high-dimensional statistical multivariate models. However, state-of-the-art procedures, based on the Minimum Covariance Determinant (MCD) estimator, are not well-suited for such high-dimensional settings. In this work, we introduce regularization in the MCD framework and investigate different regularization schemes. We carry out extensive simulations to provide backing for practical choices in absence of ground truth knowledge. We demonstrate on functional neuroimaging datasets that outlier detection can be performed with small sample sizes and improves group studies.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22728304     DOI: 10.1016/j.media.2012.05.002

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  13 in total

1.  PCA leverage: outlier detection for high-dimensional functional magnetic resonance imaging data.

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Journal:  J Neurosci Methods       Date:  2016-11-29       Impact factor: 2.390

4.  Structured Outlier Detection in Neuroimaging Studies with Minimal Convex Polytopes.

Authors:  Erdem Varol; Aristeidis Sotiras; Christos Davatzikos
Journal:  Med Image Comput Comput Assist Interv       Date:  2016-10-02

5.  Semi-Supervised Discriminative Classification Robust to Sample-Outliers and Feature-Noises.

Authors:  Ehsan Adeli; Kim-Han Thung; Le An; Guorong Wu; Feng Shi; Tao Wang; Dinggang Shen
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2018-01-17       Impact factor: 6.226

6.  Sensor anomaly detection in wireless sensor networks for healthcare.

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7.  Multivariate characterization of white matter heterogeneity in autism spectrum disorder.

Authors:  D C Dean; N Lange; B G Travers; M B Prigge; N Matsunami; K A Kellett; A Freeman; K L Kane; N Adluru; D P M Tromp; D J Destiche; D Samsin; B A Zielinski; P T Fletcher; J S Anderson; A L Froehlich; M F Leppert; E D Bigler; J E Lainhart; A L Alexander
Journal:  Neuroimage Clin       Date:  2017-01-06       Impact factor: 4.881

8.  The utility of multivariate outlier detection techniques for data quality evaluation in large studies: an application within the ONDRI project.

Authors:  Kelly M Sunderland; Derek Beaton; Julia Fraser; Donna Kwan; Paula M McLaughlin; Manuel Montero-Odasso; Alicia J Peltsch; Frederico Pieruccini-Faria; Demetrios J Sahlas; Richard H Swartz; Stephen C Strother; Malcolm A Binns
Journal:  BMC Med Res Methodol       Date:  2019-05-15       Impact factor: 4.615

9.  NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain.

Authors:  Krzysztof J Gorgolewski; Gael Varoquaux; Gabriel Rivera; Yannick Schwarz; Satrajit S Ghosh; Camille Maumet; Vanessa V Sochat; Thomas E Nichols; Russell A Poldrack; Jean-Baptiste Poline; Tal Yarkoni; Daniel S Margulies
Journal:  Front Neuroinform       Date:  2015-04-10       Impact factor: 4.081

10.  Visualising inter-subject variability in fMRI using threshold-weighted overlap maps.

Authors:  Mohamed L Seghier; Cathy J Price
Journal:  Sci Rep       Date:  2016-02-05       Impact factor: 4.379

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