Literature DB >> 22719676

3-(2,4-Dichloro-phen-yl)-5-(4-fluoro-phen-yl)-2-phenyl-7-(trifluoro-meth-yl)pyrazolo-[1,5-a]pyrimidine.

Ju Liu, Zhi-Qiang Cai, Yang Wang, Yu-Li Sang, Li-Feng Xu.   

Abstract

In the title compound, C(25)H(13)Cl(2)F(4)n class="Chemical">N(3), there are four planar systems, viz. three benzene rings and a pyrazolo-[1,5-a]pyrim-idine system [r.m.s. deviation = 0.002 Å]. The dihedral angle between the dichloro-phenyl ring and the unsubstituted phenyl ring is 69.95 (5)°, while that between the fluoro-phenyl ring and the unsubstituted phenyl ring is 7.97 (10)°. The crystal packing is dominated by van der Waals inter-actions. A Cl⋯Cl inter-action of 3.475 (3) Å also occurs.

Entities:  

Year:  2012        PMID: 22719676      PMCID: PMC3379478          DOI: 10.1107/S1600536812023641

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background inn class="Chemical">formation and the related structures, see: Liu et al. (2012 ▶); Frizzo et al. (2008 ▶); Bui et al. (2009 ▶). For the synthesis of other pyrozolo[1,5-a]pyrimidine derivatives and for their pharmacological applications, see: Fraley et al. (2012 ▶); Dalinger et al. (2005 ▶); Dennis et al. (2004 ▶).

Experimental

Crystal data

C25H13Cl2F4N3 M = 502.28 Monoclinic, a = 9.0826 (18) Å b = 9.0606 (18) Å c = 27.259 (6) Å β = 99.46 (3)° V = 2212.7 (8) Å3 Z = 4 Mo Kα radiation μ = 0.35 mm−1 T = 293 K 0.24 × 0.22 × 0.20 mm

Data collection

Rigaku Saturn difn class="Chemical">fractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.922, T max = 0.934 15847 measured reflections 3895 independent reflections 3056 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(n class="Chemical">F 2)] = 0.051 wR(F 2) = 0.143 S = 1.09 3895 reflections 308 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.46 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998) ▶; cell refinement: RAPID-AUTO ▶; data reduction: CrystalClear (Rigaku/MSC, 2005 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to ren class="Chemical">fine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812023641/kp2419sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812023641/kp2419Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812023641/kp2419Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIn class="Chemical">F report
C25H13Cl2F4N3F(000) = 1016
Mr = 502.28Dx = 1.508 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5009 reflections
a = 9.0826 (18) Åθ = 2.3–27.9°
b = 9.0606 (18) ŵ = 0.35 mm1
c = 27.259 (6) ÅT = 293 K
β = 99.46 (3)°Prism, yellow
V = 2212.7 (8) Å30.24 × 0.22 × 0.20 mm
Z = 4
Rigaku Saturn diffractometer3895 independent reflections
Radiation source: rotating anode3056 reflections with I > 2σ(I)
Confocal monochromatorRint = 0.041
ω scansθmax = 25.0°, θmin = 2.4°
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)h = −10→10
Tmin = 0.922, Tmax = 0.934k = −10→7
15847 measured reflectionsl = −30→32
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051H-atom parameters constrained
wR(F2) = 0.143w = 1/[σ2(Fo2) + (0.0833P)2 + 0.040P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max = 0.001
3895 reflectionsΔρmax = 0.37 e Å3
308 parametersΔρmin = −0.46 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.028 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.31929 (9)0.44828 (10)0.47969 (3)0.0868 (3)
Cl20.94948 (12)0.20741 (11)0.59085 (3)0.1024 (4)
F11.09069 (17)0.35785 (15)0.20644 (5)0.0619 (4)
F21.2102 (2)0.5478 (2)0.23496 (6)0.0886 (6)
F30.9955 (2)0.56762 (17)0.18909 (5)0.0831 (6)
F40.24299 (18)0.7892 (2)0.32444 (6)0.0917 (6)
N11.2012 (2)0.33960 (19)0.31669 (6)0.0413 (4)
N21.0698 (2)0.41358 (18)0.31156 (6)0.0385 (4)
N30.8699 (2)0.47095 (19)0.35650 (6)0.0401 (4)
C11.2191 (2)0.2873 (2)0.36384 (7)0.0388 (5)
C21.3488 (2)0.1903 (2)0.37979 (8)0.0432 (5)
C31.4710 (3)0.1954 (3)0.35534 (9)0.0542 (6)
H31.47370.26490.33040.065*
C41.5895 (3)0.0981 (3)0.36768 (10)0.0670 (8)
H41.67070.10230.35090.080*
C51.5865 (3)−0.0044 (3)0.40471 (11)0.0727 (9)
H51.6655−0.07010.41290.087*
C61.4674 (4)−0.0098 (3)0.42954 (11)0.0731 (8)
H61.4664−0.07820.45490.088*
C71.3487 (3)0.0857 (3)0.41720 (9)0.0594 (7)
H71.26780.08020.43410.071*
C81.1017 (2)0.3286 (2)0.38894 (7)0.0395 (5)
C91.0711 (2)0.2977 (2)0.43952 (7)0.0402 (5)
C101.1586 (3)0.3478 (2)0.48288 (8)0.0468 (6)
C111.1222 (3)0.3204 (3)0.52918 (8)0.0553 (7)
H111.18310.35510.55760.066*
C120.9960 (3)0.2419 (3)0.53295 (8)0.0592 (7)
C130.9050 (3)0.1923 (3)0.49108 (10)0.0747 (9)
H130.81810.14070.49360.090*
C140.9437 (3)0.2199 (3)0.44528 (9)0.0620 (7)
H140.88200.18490.41700.074*
C151.0032 (2)0.4081 (2)0.35423 (7)0.0378 (5)
C160.8006 (2)0.5390 (2)0.31605 (7)0.0386 (5)
C170.8643 (3)0.5463 (2)0.27171 (8)0.0424 (5)
H170.81290.59370.24380.051*
C180.9989 (2)0.4847 (2)0.27000 (7)0.0394 (5)
C191.0751 (3)0.4900 (3)0.22528 (8)0.0461 (6)
C200.6539 (2)0.6071 (2)0.31877 (7)0.0396 (5)
C210.5912 (3)0.7106 (3)0.28349 (9)0.0493 (6)
H210.64270.73810.25810.059*
C220.4542 (3)0.7726 (3)0.28576 (9)0.0573 (7)
H220.41300.84190.26230.069*
C230.3796 (3)0.7307 (3)0.32307 (10)0.0576 (7)
C240.4372 (3)0.6316 (3)0.35902 (9)0.0564 (6)
H240.38480.60610.38440.068*
C250.5753 (3)0.5702 (2)0.35670 (8)0.0473 (6)
H250.61630.50300.38090.057*
U11U22U33U12U13U23
Cl10.0765 (6)0.1313 (7)0.0511 (4)−0.0570 (5)0.0062 (4)−0.0089 (4)
Cl20.1446 (9)0.1281 (8)0.0411 (4)−0.0592 (6)0.0350 (5)−0.0028 (4)
F10.0830 (11)0.0617 (9)0.0432 (8)0.0200 (7)0.0171 (7)−0.0052 (6)
F20.0899 (13)0.1194 (15)0.0648 (10)−0.0465 (11)0.0371 (9)−0.0103 (9)
F30.1145 (14)0.0927 (12)0.0507 (9)0.0534 (10)0.0388 (9)0.0330 (8)
F40.0567 (10)0.1403 (16)0.0836 (12)0.0343 (10)0.0276 (9)0.0172 (11)
N10.0423 (11)0.0467 (10)0.0346 (9)−0.0032 (8)0.0056 (8)−0.0020 (8)
N20.0449 (11)0.0409 (10)0.0303 (9)0.0002 (8)0.0075 (8)0.0001 (7)
N30.0425 (10)0.0471 (10)0.0315 (9)−0.0027 (8)0.0083 (8)−0.0011 (8)
C10.0382 (12)0.0458 (12)0.0321 (11)−0.0077 (9)0.0049 (9)−0.0040 (9)
C20.0425 (13)0.0500 (13)0.0356 (11)−0.0023 (10)0.0021 (10)−0.0076 (10)
C30.0491 (14)0.0662 (15)0.0459 (14)−0.0023 (12)0.0033 (11)−0.0048 (12)
C40.0484 (16)0.087 (2)0.0648 (17)0.0074 (14)0.0059 (13)−0.0123 (16)
C50.0590 (19)0.0739 (18)0.080 (2)0.0197 (15)−0.0047 (16)−0.0118 (16)
C60.080 (2)0.0664 (17)0.0702 (19)0.0159 (16)0.0042 (16)0.0117 (15)
C70.0614 (16)0.0612 (15)0.0560 (16)0.0081 (13)0.0108 (13)0.0055 (12)
C80.0430 (12)0.0447 (12)0.0299 (10)−0.0063 (9)0.0036 (9)−0.0008 (9)
C90.0408 (12)0.0465 (12)0.0320 (11)−0.0018 (10)0.0028 (9)0.0022 (9)
C100.0486 (14)0.0560 (14)0.0344 (12)−0.0109 (11)0.0024 (10)−0.0003 (10)
C110.0632 (16)0.0666 (16)0.0337 (12)−0.0140 (13)0.0010 (11)−0.0032 (11)
C120.0747 (18)0.0703 (16)0.0346 (13)−0.0133 (14)0.0148 (12)0.0029 (11)
C130.0732 (19)0.104 (2)0.0478 (15)−0.0433 (17)0.0131 (14)0.0027 (15)
C140.0591 (16)0.0897 (19)0.0355 (13)−0.0285 (14)0.0028 (11)−0.0048 (12)
C150.0424 (12)0.0442 (12)0.0274 (10)−0.0045 (9)0.0071 (9)−0.0028 (9)
C160.0439 (12)0.0378 (11)0.0338 (11)−0.0055 (9)0.0052 (9)−0.0028 (9)
C170.0494 (14)0.0440 (12)0.0341 (11)0.0012 (10)0.0074 (10)0.0014 (9)
C180.0518 (14)0.0371 (11)0.0303 (11)−0.0035 (10)0.0095 (10)−0.0006 (9)
C190.0576 (15)0.0468 (13)0.0358 (12)0.0053 (11)0.0133 (11)0.0039 (10)
C200.0407 (12)0.0421 (12)0.0362 (11)−0.0068 (9)0.0064 (9)−0.0043 (9)
C210.0441 (13)0.0639 (15)0.0404 (12)−0.0012 (11)0.0080 (10)0.0047 (11)
C220.0495 (14)0.0713 (16)0.0504 (14)0.0128 (12)0.0064 (12)0.0111 (12)
C230.0412 (14)0.0759 (17)0.0563 (15)0.0061 (12)0.0093 (12)−0.0060 (13)
C240.0552 (15)0.0684 (16)0.0504 (14)−0.0040 (13)0.0227 (12)−0.0013 (13)
C250.0540 (14)0.0510 (13)0.0389 (12)−0.0036 (11)0.0134 (11)0.0012 (10)
Cl1—C101.734 (2)C8—C91.477 (3)
Cl2—C121.728 (2)C9—C141.386 (3)
F1—C191.320 (3)C9—C101.387 (3)
F2—C191.320 (3)C10—C111.379 (3)
F3—C191.325 (2)C11—C121.367 (3)
F4—C231.356 (3)C11—H110.9300
N1—C11.354 (3)C12—C131.370 (3)
N1—N21.356 (2)C13—C141.375 (3)
N2—C181.369 (3)C13—H130.9300
N2—C151.397 (3)C14—H140.9300
N3—C161.328 (3)C16—C171.425 (3)
N3—C151.349 (3)C16—C201.481 (3)
C1—C81.409 (3)C17—C181.352 (3)
C1—C21.477 (3)C17—H170.9300
C2—C31.386 (3)C18—C191.498 (3)
C2—C71.392 (3)C20—C251.390 (3)
C3—C41.389 (4)C20—C211.396 (3)
C3—H30.9300C21—C221.376 (3)
C4—C51.375 (4)C21—H210.9300
C4—H40.9300C22—C231.365 (4)
C5—C61.369 (4)C22—H220.9300
C5—H50.9300C23—C241.368 (4)
C6—C71.380 (4)C24—C251.384 (3)
C6—H60.9300C24—H240.9300
C7—H70.9300C25—H250.9300
C8—C151.391 (3)
C1—N1—N2103.71 (17)C12—C13—H13120.4
N1—N2—C18127.17 (18)C14—C13—H13120.4
N1—N2—C15112.99 (16)C13—C14—C9122.6 (2)
C18—N2—C15119.81 (18)C13—C14—H14118.7
C16—N3—C15117.66 (18)C9—C14—H14118.7
N1—C1—C8112.68 (18)N3—C15—C8131.98 (19)
N1—C1—C2116.95 (19)N3—C15—N2122.52 (18)
C8—C1—C2130.22 (19)C8—C15—N2105.50 (19)
C3—C2—C7118.2 (2)N3—C16—C17121.5 (2)
C3—C2—C1120.1 (2)N3—C16—C20117.33 (19)
C7—C2—C1121.6 (2)C17—C16—C20121.14 (19)
C2—C3—C4120.8 (2)C18—C17—C16120.4 (2)
C2—C3—H3119.6C18—C17—H17119.8
C4—C3—H3119.6C16—C17—H17119.8
C5—C4—C3119.9 (3)C17—C18—N2118.08 (19)
C5—C4—H4120.0C17—C18—C19123.80 (19)
C3—C4—H4120.0N2—C18—C19118.1 (2)
C6—C5—C4119.9 (3)F1—C19—F2106.4 (2)
C6—C5—H5120.0F1—C19—F3105.79 (17)
C4—C5—H5120.0F2—C19—F3108.3 (2)
C5—C6—C7120.4 (3)F1—C19—C18112.40 (18)
C5—C6—H6119.8F2—C19—C18112.87 (18)
C7—C6—H6119.8F3—C19—C18110.76 (19)
C6—C7—C2120.7 (3)C25—C20—C21118.2 (2)
C6—C7—H7119.6C25—C20—C16120.87 (19)
C2—C7—H7119.6C21—C20—C16120.9 (2)
C15—C8—C1105.08 (18)C22—C21—C20120.9 (2)
C15—C8—C9122.3 (2)C22—C21—H21119.6
C1—C8—C9132.56 (19)C20—C21—H21119.6
C14—C9—C10116.2 (2)C23—C22—C21118.9 (2)
C14—C9—C8119.36 (18)C23—C22—H22120.6
C10—C9—C8124.3 (2)C21—C22—H22120.6
C11—C10—C9122.1 (2)F4—C23—C22118.7 (2)
C11—C10—Cl1118.08 (17)F4—C23—C24118.7 (2)
C9—C10—Cl1119.85 (17)C22—C23—C24122.6 (2)
C12—C11—C10119.5 (2)C23—C24—C25118.3 (2)
C12—C11—H11120.2C23—C24—H24120.9
C10—C11—H11120.2C25—C24—H24120.9
C11—C12—C13120.4 (2)C24—C25—C20121.2 (2)
C11—C12—Cl2119.78 (19)C24—C25—H25119.4
C13—C12—Cl2119.8 (2)C20—C25—H25119.4
C12—C13—C14119.2 (2)
C1—N1—N2—C18−178.37 (19)C1—C8—C15—N3177.8 (2)
C1—N1—N2—C15−0.6 (2)C9—C8—C15—N3−0.1 (3)
N2—N1—C1—C8−0.7 (2)C1—C8—C15—N2−2.0 (2)
N2—N1—C1—C2175.35 (17)C9—C8—C15—N2−179.81 (18)
N1—C1—C2—C322.1 (3)N1—N2—C15—N3−178.07 (17)
C8—C1—C2—C3−162.6 (2)C18—N2—C15—N3−0.1 (3)
N1—C1—C2—C7−153.9 (2)N1—N2—C15—C81.7 (2)
C8—C1—C2—C721.4 (3)C18—N2—C15—C8179.63 (17)
C7—C2—C3—C40.4 (3)C15—N3—C16—C17−0.2 (3)
C1—C2—C3—C4−175.6 (2)C15—N3—C16—C20179.71 (17)
C2—C3—C4—C5−0.3 (4)N3—C16—C17—C18−0.7 (3)
C3—C4—C5—C6−0.4 (4)C20—C16—C17—C18179.40 (18)
C4—C5—C6—C71.0 (4)C16—C17—C18—N21.2 (3)
C5—C6—C7—C2−0.8 (4)C16—C17—C18—C19−178.71 (19)
C3—C2—C7—C60.1 (4)N1—N2—C18—C17176.86 (18)
C1—C2—C7—C6176.1 (2)C15—N2—C18—C17−0.8 (3)
N1—C1—C8—C151.8 (2)N1—N2—C18—C19−3.3 (3)
C2—C1—C8—C15−173.7 (2)C15—N2—C18—C19179.10 (19)
N1—C1—C8—C9179.3 (2)C17—C18—C19—F1−115.6 (2)
C2—C1—C8—C93.9 (4)N2—C18—C19—F164.6 (3)
C15—C8—C9—C1459.2 (3)C17—C18—C19—F2124.1 (2)
C1—C8—C9—C14−118.0 (3)N2—C18—C19—F2−55.8 (3)
C15—C8—C9—C10−117.6 (2)C17—C18—C19—F32.5 (3)
C1—C8—C9—C1065.3 (3)N2—C18—C19—F3−177.34 (19)
C14—C9—C10—C110.7 (4)N3—C16—C20—C25−15.9 (3)
C8—C9—C10—C11177.6 (2)C17—C16—C20—C25164.1 (2)
C14—C9—C10—Cl1−179.21 (19)N3—C16—C20—C21163.79 (19)
C8—C9—C10—Cl1−2.3 (3)C17—C16—C20—C21−16.3 (3)
C9—C10—C11—C12−0.2 (4)C25—C20—C21—C22−1.1 (3)
Cl1—C10—C11—C12179.8 (2)C16—C20—C21—C22179.3 (2)
C10—C11—C12—C13−0.9 (4)C20—C21—C22—C23−0.3 (4)
C10—C11—C12—Cl2−179.9 (2)C21—C22—C23—F4−178.4 (2)
C11—C12—C13—C141.3 (5)C21—C22—C23—C241.4 (4)
Cl2—C12—C13—C14−179.7 (2)F4—C23—C24—C25178.7 (2)
C12—C13—C14—C9−0.7 (5)C22—C23—C24—C25−1.1 (4)
C10—C9—C14—C13−0.3 (4)C23—C24—C25—C20−0.3 (4)
C8—C9—C14—C13−177.3 (3)C21—C20—C25—C241.4 (3)
C16—N3—C15—C8−179.1 (2)C16—C20—C25—C24−179.0 (2)
C16—N3—C15—N20.6 (3)
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Liquid-phase synthesis of combinatorial libraries based on 7-trifluoromethyl-substituted pyrazolo[1,5-a]pyrimidine scaffold.

Authors:  Igor L Dalinger; Irina A Vatsadse; Svyatoslav A Shevelev; Alexandre V Ivachtchenko
Journal:  J Comb Chem       Date:  2005 Mar-Apr

3.  Pyrazolo[1,5-a]pyrimidines as estrogen receptor ligands: defining the orientation of a novel heterocyclic core.

Authors:  Dennis R Compton; Kathryn E Carlson; John A Katzenellenbogen
Journal:  Bioorg Med Chem Lett       Date:  2004-11-15       Impact factor: 2.823

4.  The nature of halogen...halogen interactions: a model derived from experimental charge-density analysis.

Authors:  Thai Thanh Thu Bui; Slimane Dahaoui; Claude Lecomte; Gautam R Desiraju; Enrique Espinosa
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

5.  2-Methyl-5-(4-tol-yl)-7-(trifluoro-meth-yl)pyrazolo[1,5-a]pyrimidine.

Authors:  Clarissa P Frizzo; Patrick T Campos; Mara R B Marzari; Pablo Machado; Marcos A P Martins
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-06

6.  3-(2,4-Dichloro-phen-yl)-5-(4-fluoro-phen-yl)-2-methyl-7-(trifluoro-meth-yl)pyrazolo-[1,5-a]pyrimidine.

Authors:  Ju Liu; Zhi-Qiang Cai; Yang Wang; Ming-Jun Jiang; Li-Feng Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-25
  6 in total

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