Literature DB >> 22719668

2-Eth-oxy-6-{[1-(3-eth-oxy-2-hy-droxy-benz-yl)-1H-benzimidazol-2-yl]meth-yl}phenol nitro-methane monosolvate.

Kwang Ha1.   

Abstract

In the title solvate, C(24)H(24)N(2)O(4)·CH(3)NO(2), the benzene ring of the 2-eth-oxy-6-methyl-phenol substituent is approximately perpendicular to the nearly planar benzimidazole ring [maximum deviation = 0.021 (2) Å], making a dihedral angle of 84.32 (7)°. The benzene ring of the 2-eth-oxy-phenol group is somewhat inclined to the benzimidazole ring plane by 28.03 (5)°. The dihedral angle between the benzene rings is 82.20 (9)°. The compound reveals strong intra-molecular O-H⋯N and O-H⋯O hydrogen bonds, forming six- and five-membered rings, respectively. In the crystal, mol-ecules are connected by bifurcated O-H⋯(O,O) hydrogen bonds, forming chains along the b axis.

Entities:  

Year:  2012        PMID: 22719668      PMCID: PMC3379470          DOI: 10.1107/S1600536812023665

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of the meth­oxy derivative of the title compound, see: Al-Douh et al. (2009 ▶). For the crystal structure of the title compound as an acetonitrile monosolvate, see: Ha (2012 ▶).

Experimental

Crystal data

C24H24N2O4·CH3NO2 M = 465.50 Monoclinic, a = 7.5151 (7) Å b = 19.6463 (17) Å c = 16.2578 (15) Å β = 99.898 (2)° V = 2364.6 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 273 K 0.36 × 0.20 × 0.13 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.856, T max = 1.000 17462 measured reflections 5846 independent reflections 2523 reflections with I > 2σ(I) R int = 0.090

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.157 S = 0.95 5846 reflections 318 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812023665/tk5103sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812023665/tk5103Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812023665/tk5103Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H24N2O4·CH3NO2F(000) = 984
Mr = 465.50Dx = 1.308 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2443 reflections
a = 7.5151 (7) Åθ = 2.8–22.7°
b = 19.6463 (17) ŵ = 0.09 mm1
c = 16.2578 (15) ÅT = 273 K
β = 99.898 (2)°Block, orange
V = 2364.6 (4) Å30.36 × 0.20 × 0.13 mm
Z = 4
Bruker SMART 1000 CCD diffractometer5846 independent reflections
Radiation source: fine-focus sealed tube2523 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.090
φ and ω scansθmax = 28.3°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −9→10
Tmin = 0.856, Tmax = 1.000k = −26→23
17462 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.157H atoms treated by a mixture of independent and constrained refinement
S = 0.95w = 1/[σ2(Fo2) + (0.0503P)2] where P = (Fo2 + 2Fc2)/3
5846 reflections(Δ/σ)max < 0.001
318 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.1517 (3)−0.00824 (8)0.25918 (12)0.0364 (5)
H1O0.166 (5)0.0034 (17)0.206 (2)0.105 (14)*
O20.1909 (3)−0.02200 (9)0.41939 (11)0.0421 (5)
O3−0.0023 (2)0.36913 (9)0.19378 (11)0.0367 (5)
H3O−0.032 (4)0.4180 (15)0.1965 (19)0.076 (10)*
O40.2353 (2)0.47405 (8)0.21047 (12)0.0399 (5)
N10.2058 (3)0.06287 (10)0.13119 (14)0.0362 (6)
N20.1347 (3)0.17347 (10)0.13095 (13)0.0329 (6)
C10.1707 (4)0.08554 (13)0.04930 (17)0.0352 (7)
C20.1729 (4)0.05148 (14)−0.02530 (18)0.0424 (8)
H20.20120.0054−0.02580.051*
C30.1320 (4)0.08766 (15)−0.09819 (18)0.0475 (8)
H30.13290.0657−0.14880.057*
C40.0889 (4)0.15692 (15)−0.09826 (19)0.0494 (8)
H40.06290.1801−0.14880.059*
C50.0841 (4)0.19139 (14)−0.02510 (19)0.0453 (8)
H50.05450.2373−0.02490.054*
C60.1256 (4)0.15445 (13)0.04832 (17)0.0345 (7)
C70.1872 (3)0.11683 (12)0.17827 (16)0.0312 (6)
C80.2174 (3)0.11250 (12)0.26941 (16)0.0311 (6)
C90.1955 (3)0.04905 (12)0.30544 (16)0.0298 (6)
C100.2224 (4)0.04219 (13)0.39271 (17)0.0336 (7)
C110.2786 (4)0.09698 (14)0.44263 (18)0.0403 (7)
H110.29740.09240.50040.048*
C120.3074 (4)0.15947 (14)0.40681 (18)0.0433 (8)
H120.34770.19630.44090.052*
C130.2772 (4)0.16734 (13)0.32187 (18)0.0396 (7)
H130.29650.20950.29890.048*
C140.2320 (4)−0.03579 (14)0.50701 (17)0.0444 (8)
H14A0.1562−0.00850.53680.053*
H14B0.3574−0.02510.52850.053*
C150.1970 (4)−0.11004 (14)0.51828 (18)0.0537 (9)
H15A0.0730−0.12010.49610.080*
H15B0.2216−0.12110.57660.080*
H15C0.2741−0.13650.48930.080*
C160.0750 (4)0.23959 (12)0.15603 (17)0.0355 (7)
H16A0.03740.23510.20990.043*
H16B−0.02930.25390.11610.043*
C170.2187 (4)0.29402 (12)0.16189 (16)0.0323 (7)
C180.1706 (4)0.35914 (12)0.18154 (16)0.0313 (6)
C190.2982 (4)0.41196 (13)0.18991 (16)0.0335 (6)
C200.4725 (4)0.39823 (14)0.17722 (17)0.0408 (7)
H200.55790.43290.18210.049*
C210.5192 (4)0.33281 (14)0.15726 (18)0.0455 (8)
H210.63630.32360.14910.055*
C220.3929 (4)0.28132 (13)0.14944 (18)0.0414 (7)
H220.42520.23760.13570.050*
C230.3662 (4)0.52643 (13)0.2358 (2)0.0467 (8)
H23A0.42260.54010.18900.056*
H23B0.45950.50980.27990.056*
C240.2705 (4)0.58586 (14)0.2663 (2)0.0598 (10)
H24A0.17640.60120.22260.090*
H24B0.35500.62220.28200.090*
H24C0.21870.57230.31380.090*
O50.6407 (5)0.27813 (18)0.4851 (3)0.1619 (18)
O60.6611 (6)0.3759 (2)0.5301 (2)0.1664 (18)
N30.6350 (4)0.3364 (2)0.4748 (3)0.0808 (10)
C250.6008 (6)0.3659 (3)0.3918 (3)0.133 (2)
H25A0.48210.38560.38150.200*
H25B0.60870.33110.35110.200*
H25C0.68890.40060.38770.200*
U11U22U33U12U13U23
O10.0477 (13)0.0267 (10)0.0354 (12)−0.0027 (8)0.0084 (10)−0.0019 (9)
O20.0549 (14)0.0404 (11)0.0313 (11)0.0011 (9)0.0082 (10)0.0044 (9)
O30.0338 (12)0.0312 (11)0.0459 (12)0.0002 (8)0.0094 (10)−0.0025 (9)
O40.0400 (13)0.0298 (10)0.0509 (13)−0.0062 (9)0.0106 (10)−0.0049 (9)
N10.0440 (16)0.0308 (12)0.0345 (14)0.0011 (10)0.0083 (12)−0.0006 (11)
N20.0409 (15)0.0252 (12)0.0327 (14)0.0009 (10)0.0070 (11)−0.0007 (10)
C10.0424 (18)0.0322 (15)0.0321 (16)−0.0024 (13)0.0100 (14)−0.0017 (13)
C20.050 (2)0.0393 (16)0.0385 (19)−0.0033 (14)0.0103 (15)−0.0039 (14)
C30.056 (2)0.056 (2)0.0324 (18)−0.0049 (16)0.0112 (16)−0.0025 (15)
C40.062 (2)0.051 (2)0.0354 (19)−0.0020 (16)0.0086 (16)0.0086 (16)
C50.056 (2)0.0380 (17)0.042 (2)0.0000 (14)0.0088 (16)0.0043 (15)
C60.0391 (18)0.0341 (16)0.0310 (16)−0.0049 (12)0.0076 (13)0.0013 (13)
C70.0301 (16)0.0298 (14)0.0338 (16)−0.0002 (12)0.0055 (13)−0.0008 (13)
C80.0299 (16)0.0268 (14)0.0360 (16)0.0012 (11)0.0045 (13)−0.0028 (12)
C90.0280 (16)0.0285 (14)0.0326 (16)0.0019 (11)0.0047 (12)−0.0041 (12)
C100.0323 (17)0.0324 (15)0.0366 (18)0.0021 (12)0.0070 (13)0.0027 (13)
C110.0438 (19)0.0438 (17)0.0326 (16)0.0002 (14)0.0044 (14)−0.0019 (14)
C120.048 (2)0.0406 (17)0.0402 (19)−0.0014 (14)0.0052 (15)−0.0089 (14)
C130.0437 (19)0.0324 (16)0.0424 (19)−0.0016 (13)0.0065 (15)−0.0027 (13)
C140.047 (2)0.0526 (19)0.0332 (18)0.0012 (14)0.0060 (15)0.0065 (14)
C150.067 (2)0.053 (2)0.0408 (19)0.0023 (16)0.0111 (17)0.0124 (15)
C160.0391 (18)0.0275 (14)0.0405 (17)0.0010 (12)0.0088 (14)−0.0017 (12)
C170.0357 (18)0.0303 (14)0.0314 (16)0.0014 (12)0.0071 (13)0.0018 (12)
C180.0308 (17)0.0352 (15)0.0271 (15)−0.0006 (12)0.0028 (12)0.0027 (12)
C190.0369 (18)0.0338 (15)0.0291 (16)−0.0024 (13)0.0041 (13)0.0001 (12)
C200.0394 (19)0.0452 (17)0.0384 (17)−0.0081 (14)0.0080 (14)0.0010 (14)
C210.0402 (19)0.0466 (18)0.052 (2)0.0019 (15)0.0148 (16)−0.0008 (15)
C220.043 (2)0.0357 (16)0.0463 (19)0.0018 (14)0.0101 (15)−0.0004 (13)
C230.042 (2)0.0415 (17)0.055 (2)−0.0142 (14)0.0040 (16)−0.0075 (15)
C240.059 (2)0.0447 (19)0.077 (3)−0.0144 (16)0.016 (2)−0.0212 (17)
O50.123 (3)0.078 (2)0.279 (5)−0.026 (2)0.018 (3)0.051 (3)
O60.212 (5)0.166 (4)0.118 (3)−0.030 (3)0.021 (3)−0.050 (3)
N30.067 (2)0.074 (3)0.098 (3)−0.0158 (19)0.006 (2)0.000 (2)
C250.085 (4)0.232 (6)0.083 (4)0.034 (4)0.017 (3)0.060 (4)
O1—C91.362 (3)C13—H130.9300
O1—H1O0.92 (4)C14—C151.499 (4)
O2—C101.367 (3)C14—H14A0.9700
O2—C141.431 (3)C14—H14B0.9700
O3—C181.362 (3)C15—H15A0.9600
O3—H3O0.99 (3)C15—H15B0.9600
O4—C191.370 (3)C15—H15C0.9600
O4—C231.434 (3)C16—C171.511 (3)
N1—C71.329 (3)C16—H16A0.9700
N1—C11.386 (3)C16—H16B0.9700
N2—C71.372 (3)C17—C221.381 (4)
N2—C61.385 (3)C17—C181.382 (3)
N2—C161.455 (3)C18—C191.403 (3)
C1—C21.388 (4)C19—C201.387 (4)
C1—C61.395 (3)C20—C211.385 (3)
C2—C31.371 (4)C20—H200.9300
C2—H20.9300C21—C221.378 (4)
C3—C41.399 (4)C21—H210.9300
C3—H30.9300C22—H220.9300
C4—C51.374 (4)C23—C241.500 (4)
C4—H40.9300C23—H23A0.9700
C5—C61.386 (4)C23—H23B0.9700
C5—H50.9300C24—H24A0.9600
C7—C81.462 (4)C24—H24B0.9600
C8—C91.399 (3)C24—H24C0.9600
C8—C131.399 (3)O5—N31.157 (4)
C9—C101.405 (3)O6—N31.178 (4)
C10—C111.370 (3)N3—C251.450 (5)
C11—C121.392 (3)C25—H25A0.9600
C11—H110.9300C25—H25B0.9600
C12—C131.369 (4)C25—H25C0.9600
C12—H120.9300
C9—O1—H1O105 (2)H14A—C14—H14B108.6
C10—O2—C14118.1 (2)C14—C15—H15A109.5
C18—O3—H3O112.0 (18)C14—C15—H15B109.5
C19—O4—C23117.4 (2)H15A—C15—H15B109.5
C7—N1—C1106.0 (2)C14—C15—H15C109.5
C7—N2—C6106.7 (2)H15A—C15—H15C109.5
C7—N2—C16129.8 (2)H15B—C15—H15C109.5
C6—N2—C16123.1 (2)N2—C16—C17113.5 (2)
N1—C1—C2131.0 (2)N2—C16—H16A108.9
N1—C1—C6109.2 (2)C17—C16—H16A108.9
C2—C1—C6119.8 (3)N2—C16—H16B108.9
C3—C2—C1118.1 (3)C17—C16—H16B108.9
C3—C2—H2121.0H16A—C16—H16B107.7
C1—C2—H2121.0C22—C17—C18119.5 (2)
C2—C3—C4121.5 (3)C22—C17—C16123.2 (2)
C2—C3—H3119.2C18—C17—C16117.2 (2)
C4—C3—H3119.2O3—C18—C17117.4 (2)
C5—C4—C3121.3 (3)O3—C18—C19122.2 (2)
C5—C4—H4119.4C17—C18—C19120.4 (2)
C3—C4—H4119.4O4—C19—C20125.7 (2)
C4—C5—C6116.9 (3)O4—C19—C18115.1 (2)
C4—C5—H5121.6C20—C19—C18119.2 (2)
C6—C5—H5121.6C21—C20—C19119.9 (3)
N2—C6—C5131.3 (2)C21—C20—H20120.0
N2—C6—C1106.2 (2)C19—C20—H20120.0
C5—C6—C1122.4 (3)C22—C21—C20120.3 (3)
N1—C7—N2111.9 (2)C22—C21—H21119.8
N1—C7—C8121.6 (2)C20—C21—H21119.8
N2—C7—C8126.5 (2)C21—C22—C17120.6 (2)
C9—C8—C13118.6 (2)C21—C22—H22119.7
C9—C8—C7117.8 (2)C17—C22—H22119.7
C13—C8—C7123.4 (2)O4—C23—C24108.0 (2)
O1—C9—C8122.7 (2)O4—C23—H23A110.1
O1—C9—C10117.2 (2)C24—C23—H23A110.1
C8—C9—C10120.1 (2)O4—C23—H23B110.1
O2—C10—C11126.1 (2)C24—C23—H23B110.1
O2—C10—C9114.0 (2)H23A—C23—H23B108.4
C11—C10—C9119.9 (2)C23—C24—H24A109.5
C10—C11—C12120.0 (3)C23—C24—H24B109.5
C10—C11—H11120.0H24A—C24—H24B109.5
C12—C11—H11120.0C23—C24—H24C109.5
C13—C12—C11120.7 (3)H24A—C24—H24C109.5
C13—C12—H12119.6H24B—C24—H24C109.5
C11—C12—H12119.6O5—N3—O6123.0 (5)
C12—C13—C8120.5 (3)O5—N3—C25121.8 (5)
C12—C13—H13119.7O6—N3—C25115.2 (4)
C8—C13—H13119.7N3—C25—H25A109.5
O2—C14—C15107.1 (2)N3—C25—H25B109.5
O2—C14—H14A110.3H25A—C25—H25B109.5
C15—C14—H14A110.3N3—C25—H25C109.5
O2—C14—H14B110.3H25A—C25—H25C109.5
C15—C14—H14B110.3H25B—C25—H25C109.5
C7—N1—C1—C2179.1 (3)O1—C9—C10—O2−3.3 (3)
C7—N1—C1—C6−1.6 (3)C8—C9—C10—O2178.0 (2)
N1—C1—C2—C3−179.9 (3)O1—C9—C10—C11175.6 (2)
C6—C1—C2—C30.8 (4)C8—C9—C10—C11−3.1 (4)
C1—C2—C3—C4−0.1 (4)O2—C10—C11—C12179.3 (2)
C2—C3—C4—C5−0.6 (5)C9—C10—C11—C120.5 (4)
C3—C4—C5—C60.6 (4)C10—C11—C12—C131.2 (4)
C7—N2—C6—C5−178.3 (3)C11—C12—C13—C8−0.3 (4)
C16—N2—C6—C58.6 (4)C9—C8—C13—C12−2.2 (4)
C7—N2—C6—C11.0 (3)C7—C8—C13—C12−178.3 (3)
C16—N2—C6—C1−172.1 (2)C10—O2—C14—C15−176.3 (2)
C4—C5—C6—N2179.4 (3)C7—N2—C16—C17102.3 (3)
C4—C5—C6—C10.2 (4)C6—N2—C16—C17−86.3 (3)
N1—C1—C6—N20.3 (3)N2—C16—C17—C22−3.6 (4)
C2—C1—C6—N2179.8 (2)N2—C16—C17—C18177.0 (2)
N1—C1—C6—C5179.7 (3)C22—C17—C18—O3−179.6 (2)
C2—C1—C6—C5−0.9 (4)C16—C17—C18—O3−0.2 (4)
C1—N1—C7—N22.3 (3)C22—C17—C18—C19−0.8 (4)
C1—N1—C7—C8−178.9 (2)C16—C17—C18—C19178.6 (2)
C6—N2—C7—N1−2.1 (3)C23—O4—C19—C20−12.0 (4)
C16—N2—C7—N1170.3 (2)C23—O4—C19—C18168.1 (2)
C6—N2—C7—C8179.1 (2)O3—C18—C19—O4−0.6 (4)
C16—N2—C7—C8−8.4 (4)C17—C18—C19—O4−179.2 (2)
N1—C7—C8—C9−25.1 (4)O3—C18—C19—C20179.5 (2)
N2—C7—C8—C9153.6 (2)C17—C18—C19—C200.8 (4)
N1—C7—C8—C13151.1 (3)O4—C19—C20—C21179.5 (3)
N2—C7—C8—C13−30.3 (4)C18—C19—C20—C21−0.6 (4)
C13—C8—C9—O1−174.7 (2)C19—C20—C21—C220.4 (4)
C7—C8—C9—O11.6 (4)C20—C21—C22—C17−0.4 (4)
C13—C8—C9—C103.9 (4)C18—C17—C22—C210.6 (4)
C7—C8—C9—C10−179.8 (2)C16—C17—C22—C21−178.7 (3)
C14—O2—C10—C11−4.9 (4)C19—O4—C23—C24−172.3 (2)
C14—O2—C10—C9173.9 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1O···N10.92 (4)1.75 (4)2.596 (3)152 (3)
O3—H3O···O40.99 (3)2.27 (3)2.710 (2)106 (2)
O3—H3O···O1i0.99 (3)1.91 (3)2.819 (2)151 (2)
O3—H3O···O2i0.99 (3)2.36 (3)3.012 (3)122 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯N10.92 (4)1.75 (4)2.596 (3)152 (3)
O3—H3O⋯O40.99 (3)2.27 (3)2.710 (2)106 (2)
O3—H3O⋯O1i0.99 (3)1.91 (3)2.819 (2)151 (2)
O3—H3O⋯O2i0.99 (3)2.36 (3)3.012 (3)122 (2)

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-[1-(2-Hydroxy-3-methoxybenzyl)-1H-benzimidazol-2-yl]-6-methoxyphenol monohydrate.

Authors:  Mohammed H Al-Douh; Hasnah Osman; Shafida A Hamid; Reza Kia; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-28

3.  2-Eth-oxy-6-[1-(3-eth-oxy-2-hy-droxy-benz-yl)-2,3-dihydro-1H-benzimidazol-2-yl]phenol acetonitrile monosolvate.

Authors:  Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-18

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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