Literature DB >> 22590286

2-Eth-oxy-6-[1-(3-eth-oxy-2-hy-droxy-benz-yl)-2,3-dihydro-1H-benzimidazol-2-yl]phenol acetonitrile monosolvate.

Kwang Ha1.   

Abstract

The title compound, C(24)H(24)N(2)O(4)·CH(3)CN, a disubstituted benzimidazole, crystallized as an acetonitrile monosolvate. The benzene ring of the 2-eth-oxy-6-methyl-phenol substiuent is approximately perpendicular to the nearly planar benzimidazole ring system [maximum deviation = 0.016 (1) Å], making a dihedral angle of 84.27 (8)°. The benzene ring of the 2-eth-oxy-phenol substituent is inclined to the benzimidazole mean plane by 29.68 (8)°. The dihedral angle between the benzene rings is 80.36 (9)°. In the mol-ecule, there are strong O-H⋯N and O-H⋯O hydrogen bonds. In the crystal, mol-ecules are connected by bifurcated O-H⋯(O,O) hydrogen bonds, forming chains propagating along [010].

Entities:  

Year:  2012        PMID: 22590286      PMCID: PMC3344524          DOI: 10.1107/S1600536812015449

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of the meth­oxy derivative of the title compound, see: Al-Douh et al. (2009 ▶).

Experimental

Crystal data

C24H24N2O4·C2H3N M = 445.51 Monoclinic, a = 7.6177 (3) Å b = 19.2728 (8) Å c = 16.3480 (7) Å β = 99.991 (1)° V = 2363.72 (17) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 200 K 0.27 × 0.24 × 0.20 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.853, T max = 1.000 17475 measured reflections 5852 independent reflections 2912 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.129 S = 0.96 5852 reflections 309 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812015449/su2405sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812015449/su2405Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812015449/su2405Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H24N2O4·C2H3NF(000) = 944
Mr = 445.51Dx = 1.252 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3400 reflections
a = 7.6177 (3) Åθ = 2.5–26.4°
b = 19.2728 (8) ŵ = 0.09 mm1
c = 16.3480 (7) ÅT = 200 K
β = 99.991 (1)°Block, orange
V = 2363.72 (17) Å30.27 × 0.24 × 0.20 mm
Z = 4
Bruker SMART 1000 CCD diffractometer5852 independent reflections
Radiation source: fine-focus sealed tube2912 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.059
φ and ω scansθmax = 28.3°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −8→10
Tmin = 0.853, Tmax = 1.000k = −25→24
17475 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H atoms treated by a mixture of independent and constrained refinement
S = 0.96w = 1/[σ2(Fo2) + (0.0484P)2] where P = (Fo2 + 2Fc2)/3
5852 reflections(Δ/σ)max < 0.001
309 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.15735 (18)−0.00918 (6)0.26012 (8)0.0365 (3)
H1O0.168 (3)0.0028 (13)0.2049 (17)0.094 (9)*
O20.19475 (18)−0.02073 (7)0.41963 (7)0.0417 (4)
O3−0.00142 (17)0.37008 (7)0.19346 (8)0.0365 (3)
H3O−0.037 (3)0.4162 (14)0.1998 (15)0.096 (9)*
O40.22786 (17)0.47927 (7)0.21034 (8)0.0394 (3)
N10.2178 (2)0.06036 (8)0.13143 (9)0.0379 (4)
N20.1411 (2)0.17258 (8)0.12832 (9)0.0342 (4)
C10.1805 (3)0.08206 (10)0.04922 (11)0.0362 (5)
C20.1843 (3)0.04599 (11)−0.02431 (12)0.0443 (5)
H20.2157−0.0017−0.02370.053*
C30.1412 (3)0.08162 (12)−0.09760 (12)0.0491 (6)
H30.14310.0580−0.14850.059*
C40.0946 (3)0.15150 (12)−0.09935 (13)0.0505 (6)
H40.06580.1744−0.15140.061*
C50.0892 (3)0.18836 (11)−0.02765 (12)0.0442 (5)
H50.05740.2361−0.02870.053*
C60.1330 (2)0.15182 (10)0.04647 (11)0.0358 (5)
C70.1956 (2)0.11603 (10)0.17655 (11)0.0329 (4)
C80.2259 (2)0.11358 (10)0.26759 (11)0.0320 (4)
C90.2022 (2)0.04994 (9)0.30469 (11)0.0316 (4)
C100.2278 (2)0.04394 (10)0.39178 (11)0.0343 (5)
C110.2845 (3)0.10069 (10)0.44051 (12)0.0395 (5)
H110.30300.09690.49930.047*
C120.3147 (3)0.16344 (11)0.40360 (12)0.0433 (5)
H120.35620.20210.43750.052*
C130.2854 (3)0.17026 (10)0.31876 (12)0.0392 (5)
H130.30550.21370.29450.047*
C140.2317 (3)−0.03357 (11)0.50729 (11)0.0452 (5)
H14A0.1566−0.00360.53630.054*
H14B0.3585−0.02380.52980.054*
C150.1904 (3)−0.10855 (11)0.51931 (13)0.0543 (6)
H15A0.0655−0.11770.49550.081*
H15B0.2110−0.11930.57880.081*
H15C0.2678−0.13760.49150.081*
C160.0792 (2)0.23988 (9)0.15229 (11)0.0355 (5)
H16A0.04030.23520.20680.043*
H16B−0.02590.25400.11110.043*
C170.2181 (2)0.29633 (10)0.15836 (11)0.0323 (4)
C180.1690 (2)0.36206 (9)0.17971 (10)0.0304 (4)
C190.2916 (3)0.41653 (10)0.18826 (11)0.0335 (4)
C200.4630 (3)0.40455 (11)0.17447 (11)0.0405 (5)
H200.54690.44140.17970.049*
C210.5126 (3)0.33855 (11)0.15293 (12)0.0427 (5)
H210.63060.33040.14380.051*
C220.3911 (3)0.28487 (11)0.14468 (11)0.0393 (5)
H220.42560.23990.12960.047*
C230.3560 (3)0.53233 (11)0.23731 (13)0.0468 (6)
H23A0.41170.54820.19020.056*
H23B0.45070.51410.28120.056*
C240.2611 (3)0.59180 (12)0.27053 (15)0.0630 (7)
H24A0.17000.61040.22620.094*
H24B0.34720.62830.29070.094*
H24C0.20430.57540.31630.094*
N30.6545 (4)0.31138 (16)0.53251 (17)0.1080 (10)
C250.6024 (4)0.3616 (2)0.38529 (19)0.1163 (13)
H25A0.63540.41080.38740.174*
H25B0.47640.35680.36050.174*
H25C0.67580.33630.35160.174*
C260.6315 (4)0.33353 (16)0.46845 (19)0.0758 (8)
U11U22U33U12U13U23
O10.0473 (9)0.0318 (8)0.0306 (8)−0.0014 (6)0.0072 (6)−0.0023 (6)
O20.0560 (9)0.0414 (9)0.0282 (7)−0.0007 (7)0.0087 (6)0.0049 (6)
O30.0346 (8)0.0348 (9)0.0412 (8)−0.0011 (6)0.0095 (6)−0.0018 (6)
O40.0410 (8)0.0360 (8)0.0417 (8)−0.0088 (6)0.0084 (6)−0.0066 (6)
N10.0495 (11)0.0350 (10)0.0291 (9)0.0019 (8)0.0066 (8)−0.0022 (7)
N20.0423 (10)0.0307 (9)0.0302 (9)0.0003 (7)0.0082 (7)−0.0012 (7)
C10.0404 (12)0.0372 (12)0.0321 (11)−0.0035 (9)0.0097 (9)−0.0029 (9)
C20.0547 (14)0.0426 (13)0.0372 (12)−0.0034 (10)0.0122 (10)−0.0070 (10)
C30.0577 (15)0.0587 (16)0.0322 (12)−0.0089 (12)0.0115 (10)−0.0078 (11)
C40.0626 (16)0.0561 (15)0.0334 (12)−0.0045 (12)0.0101 (11)0.0046 (11)
C50.0540 (14)0.0424 (13)0.0372 (12)−0.0014 (10)0.0101 (10)0.0050 (10)
C60.0368 (12)0.0408 (12)0.0303 (11)−0.0036 (9)0.0075 (9)−0.0012 (9)
C70.0342 (11)0.0329 (11)0.0321 (10)−0.0008 (8)0.0074 (8)−0.0001 (9)
C80.0331 (11)0.0339 (11)0.0291 (10)0.0027 (8)0.0054 (8)−0.0017 (9)
C90.0306 (11)0.0320 (11)0.0321 (11)0.0031 (8)0.0054 (8)−0.0036 (9)
C100.0337 (11)0.0364 (12)0.0336 (11)0.0021 (9)0.0077 (9)0.0025 (9)
C110.0445 (13)0.0454 (13)0.0283 (10)0.0009 (10)0.0055 (9)−0.0035 (10)
C120.0504 (14)0.0435 (13)0.0346 (12)−0.0035 (10)0.0038 (10)−0.0085 (10)
C130.0462 (13)0.0345 (12)0.0360 (12)−0.0001 (9)0.0049 (9)0.0002 (9)
C140.0480 (13)0.0582 (15)0.0291 (11)0.0000 (11)0.0059 (9)0.0066 (10)
C150.0678 (16)0.0567 (16)0.0393 (13)0.0015 (12)0.0117 (11)0.0119 (11)
C160.0402 (12)0.0327 (11)0.0341 (11)0.0021 (9)0.0076 (9)0.0001 (9)
C170.0362 (12)0.0348 (11)0.0266 (10)−0.0001 (9)0.0070 (8)0.0011 (8)
C180.0323 (11)0.0343 (11)0.0247 (10)0.0004 (9)0.0057 (8)0.0019 (8)
C190.0401 (12)0.0331 (11)0.0276 (10)−0.0020 (9)0.0069 (9)−0.0009 (8)
C200.0399 (13)0.0455 (13)0.0367 (11)−0.0101 (10)0.0080 (9)0.0018 (10)
C210.0385 (12)0.0499 (14)0.0416 (12)0.0014 (10)0.0122 (10)−0.0003 (10)
C220.0450 (13)0.0377 (12)0.0366 (11)0.0030 (10)0.0107 (9)0.0010 (9)
C230.0457 (13)0.0437 (13)0.0492 (13)−0.0145 (10)0.0033 (10)−0.0089 (11)
C240.0644 (16)0.0475 (15)0.0793 (18)−0.0154 (12)0.0191 (14)−0.0244 (13)
N30.091 (2)0.155 (3)0.0782 (19)−0.0154 (17)0.0162 (16)0.0298 (18)
C250.083 (2)0.184 (4)0.081 (2)0.012 (2)0.0128 (18)0.048 (2)
C260.0613 (18)0.099 (2)0.067 (2)−0.0066 (15)0.0124 (15)0.0110 (17)
O1—C91.364 (2)C12—H120.9500
O1—H1O0.95 (3)C13—H130.9500
O2—C101.365 (2)C14—C151.499 (3)
O2—C141.433 (2)C14—H14A0.9900
O3—C181.364 (2)C14—H14B0.9900
O3—H3O0.94 (3)C15—H15A0.9800
O4—C191.375 (2)C15—H15B0.9800
O4—C231.429 (2)C15—H15C0.9800
N1—C71.329 (2)C16—C171.509 (2)
N1—C11.389 (2)C16—H16A0.9900
N2—C71.367 (2)C16—H16B0.9900
N2—C61.388 (2)C17—C181.383 (2)
N2—C161.457 (2)C17—C221.392 (2)
C1—C61.391 (3)C18—C191.396 (2)
C1—C21.393 (3)C19—C201.382 (3)
C2—C31.370 (3)C20—C211.390 (3)
C2—H20.9500C20—H200.9500
C3—C41.392 (3)C21—C221.379 (3)
C3—H30.9500C21—H210.9500
C4—C51.377 (3)C22—H220.9500
C4—H40.9500C23—C241.506 (3)
C5—C61.391 (3)C23—H23A0.9900
C5—H50.9500C23—H23B0.9900
C7—C81.467 (2)C24—H24A0.9800
C8—C91.394 (2)C24—H24B0.9800
C8—C131.402 (3)C24—H24C0.9800
C9—C101.408 (2)N3—C261.116 (3)
C10—C111.378 (3)C25—C261.444 (4)
C11—C121.388 (3)C25—H25A0.9800
C11—H110.9500C25—H25B0.9800
C12—C131.372 (3)C25—H25C0.9800
C9—O1—H1O104.5 (15)C15—C14—H14B110.4
C10—O2—C14118.39 (15)H14A—C14—H14B108.6
C18—O3—H3O115.1 (16)C14—C15—H15A109.5
C19—O4—C23117.18 (15)C14—C15—H15B109.5
C7—N1—C1105.62 (15)H15A—C15—H15B109.5
C7—N2—C6106.53 (15)C14—C15—H15C109.5
C7—N2—C16129.40 (15)H15A—C15—H15C109.5
C6—N2—C16123.63 (15)H15B—C15—H15C109.5
N1—C1—C6109.32 (16)N2—C16—C17113.79 (15)
N1—C1—C2130.78 (19)N2—C16—H16A108.8
C6—C1—C2119.90 (18)C17—C16—H16A108.8
C3—C2—C1117.8 (2)N2—C16—H16B108.8
C3—C2—H2121.1C17—C16—H16B108.8
C1—C2—H2121.1H16A—C16—H16B107.7
C2—C3—C4121.63 (19)C18—C17—C22119.42 (17)
C2—C3—H3119.2C18—C17—C16117.35 (16)
C4—C3—H3119.2C22—C17—C16123.22 (17)
C5—C4—C3121.8 (2)O3—C18—C17116.90 (16)
C5—C4—H4119.1O3—C18—C19122.53 (17)
C3—C4—H4119.1C17—C18—C19120.55 (17)
C4—C5—C6116.2 (2)O4—C19—C20125.22 (17)
C4—C5—H5121.9O4—C19—C18115.26 (16)
C6—C5—H5121.9C20—C19—C18119.52 (18)
N2—C6—C1106.24 (16)C19—C20—C21120.01 (18)
N2—C6—C5131.13 (19)C19—C20—H20120.0
C1—C6—C5122.63 (18)C21—C20—H20120.0
N1—C7—N2112.25 (16)C22—C21—C20120.29 (19)
N1—C7—C8121.61 (17)C22—C21—H21119.9
N2—C7—C8126.14 (16)C20—C21—H21119.9
C9—C8—C13118.59 (17)C21—C22—C17120.20 (19)
C9—C8—C7117.41 (16)C21—C22—H22119.9
C13—C8—C7123.92 (17)C17—C22—H22119.9
O1—C9—C8122.82 (16)O4—C23—C24108.13 (17)
O1—C9—C10116.72 (16)O4—C23—H23A110.1
C8—C9—C10120.44 (17)C24—C23—H23A110.1
O2—C10—C11126.11 (17)O4—C23—H23B110.1
O2—C10—C9114.27 (16)C24—C23—H23B110.1
C11—C10—C9119.61 (18)H23A—C23—H23B108.4
C10—C11—C12119.94 (18)C23—C24—H24A109.5
C10—C11—H11120.0C23—C24—H24B109.5
C12—C11—H11120.0H24A—C24—H24B109.5
C13—C12—C11120.82 (19)C23—C24—H24C109.5
C13—C12—H12119.6H24A—C24—H24C109.5
C11—C12—H12119.6H24B—C24—H24C109.5
C12—C13—C8120.50 (19)C26—C25—H25A109.5
C12—C13—H13119.8C26—C25—H25B109.5
C8—C13—H13119.8H25A—C25—H25B109.5
O2—C14—C15106.75 (16)C26—C25—H25C109.5
O2—C14—H14A110.4H25A—C25—H25C109.5
C15—C14—H14A110.4H25B—C25—H25C109.5
O2—C14—H14B110.4N3—C26—C25179.5 (4)
C7—N1—C1—C6−0.8 (2)O1—C9—C10—O2−3.2 (2)
C7—N1—C1—C2179.1 (2)C8—C9—C10—O2178.09 (16)
N1—C1—C2—C3−179.59 (19)O1—C9—C10—C11175.79 (16)
C6—C1—C2—C30.4 (3)C8—C9—C10—C11−2.9 (3)
C1—C2—C3—C4−0.1 (3)O2—C10—C11—C12179.33 (18)
C2—C3—C4—C5−0.1 (3)C9—C10—C11—C120.5 (3)
C3—C4—C5—C60.1 (3)C10—C11—C12—C131.3 (3)
C7—N2—C6—C11.2 (2)C11—C12—C13—C8−0.7 (3)
C16—N2—C6—C1−171.89 (16)C9—C8—C13—C12−1.7 (3)
C7—N2—C6—C5−178.6 (2)C7—C8—C13—C12−178.45 (18)
C16—N2—C6—C58.3 (3)C10—O2—C14—C15−177.74 (16)
N1—C1—C6—N2−0.3 (2)C7—N2—C16—C17101.5 (2)
C2—C1—C6—N2179.79 (17)C6—N2—C16—C17−87.1 (2)
N1—C1—C6—C5179.54 (17)N2—C16—C17—C18179.13 (15)
C2—C1—C6—C5−0.4 (3)N2—C16—C17—C22−1.7 (2)
C4—C5—C6—N2179.94 (19)C22—C17—C18—O3−179.15 (15)
C4—C5—C6—C10.2 (3)C16—C17—C18—O30.0 (2)
C1—N1—C7—N21.6 (2)C22—C17—C18—C19−0.5 (3)
C1—N1—C7—C8−179.11 (16)C16—C17—C18—C19178.61 (16)
C6—N2—C7—N1−1.8 (2)C23—O4—C19—C20−13.3 (3)
C16—N2—C7—N1170.74 (17)C23—O4—C19—C18166.75 (16)
C6—N2—C7—C8178.97 (17)O3—C18—C19—O4−0.9 (2)
C16—N2—C7—C8−8.5 (3)C17—C18—C19—O4−179.46 (15)
N1—C7—C8—C9−27.4 (3)O3—C18—C19—C20179.11 (16)
N2—C7—C8—C9151.77 (18)C17—C18—C19—C200.6 (3)
N1—C7—C8—C13149.37 (19)O4—C19—C20—C21179.54 (17)
N2—C7—C8—C13−31.5 (3)C18—C19—C20—C21−0.5 (3)
C13—C8—C9—O1−175.13 (17)C19—C20—C21—C220.4 (3)
C7—C8—C9—O11.8 (3)C20—C21—C22—C17−0.4 (3)
C13—C8—C9—C103.5 (3)C18—C17—C22—C210.4 (3)
C7—C8—C9—C10−179.53 (16)C16—C17—C22—C21−178.67 (17)
C14—O2—C10—C11−4.1 (3)C19—O4—C23—C24−171.40 (16)
C14—O2—C10—C9174.76 (16)
D—H···AD—HH···AD···AD—H···A
O1—H1O···N10.95 (3)1.72 (3)2.602 (2)152 (2)
O3—H3O···O40.94 (3)2.33 (3)2.7180 (18)103.9 (18)
O3—H3O···O1i0.94 (3)1.89 (3)2.7774 (19)158 (2)
O3—H3O···O2i0.94 (3)2.43 (3)3.0117 (19)119.7 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯N10.95 (3)1.72 (3)2.602 (2)152 (2)
O3—H3O⋯O40.94 (3)2.33 (3)2.7180 (18)103.9 (18)
O3—H3O⋯O1i0.94 (3)1.89 (3)2.7774 (19)158 (2)
O3—H3O⋯O2i0.94 (3)2.43 (3)3.0117 (19)119.7 (19)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-[1-(2-Hydroxy-3-methoxybenzyl)-1H-benzimidazol-2-yl]-6-methoxyphenol monohydrate.

Authors:  Mohammed H Al-Douh; Hasnah Osman; Shafida A Hamid; Reza Kia; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-28

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  2 in total

1.  2-Eth-oxy-6-{[1-(3-eth-oxy-2-hy-droxy-benz-yl)-1H-benzimidazol-2-yl]meth-yl}phenol nitro-methane monosolvate.

Authors:  Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-31

2.  Crystal structure and UV spectra of a 1,2-disubstituted benzimidazolium chloride.

Authors:  Tuhin Khan; Navneet Mishra; Darshan S Mhatre; Anindya Datta
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-07-07
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.