| Literature DB >> 22719663 |
Abdelaaziz Ouahrouch, Moha Taourirte, Hassan B Lazrek, Jan W Bats, Joachim W Engels.
Abstract
In the title molecule, C(18)H(17)N(5)O(2), the dihedral angle between the benzene plane and the benzimidazole plane is 19.8 (1)° and the angle between the benzene plane and the triazole plane is 16.7 (1)°. In the crystal, mol-ecules are connected by O-H⋯N hydrogen bonds, forming zigzag chains along the c-axis direction. The chains are connected by bifurcated N-H⋯(N,N) hydrogen bonds into layers parallel to (100). These layers are connected along the a-axis direction by weak C-H⋯O contacts, forming a three-dimensional network.Entities:
Year: 2012 PMID: 22719663 PMCID: PMC3379465 DOI: 10.1107/S1600536812023410
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H17N5O2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 8027 reflections |
| θ = 3–24° | |
| µ = 0.09 mm−1 | |
| β = 99.354 (1)° | Block, yellow |
| 0.40 × 0.32 × 0.11 mm | |
| Siemens SMART 1K CCD diffractometer | 3295 independent reflections |
| Radiation source: normal-focus sealed tube | 2562 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 26.8°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 15768 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 3295 reflections | Δρmax = 0.20 e Å−3 |
| 235 parameters | Δρmin = −0.19 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0056 (7) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.50237 (13) | 0.39456 (17) | 0.71767 (6) | 0.0308 (3) | |
| O2 | 0.67189 (14) | 0.21899 (18) | 0.87378 (7) | 0.0335 (4) | |
| N1 | 1.07016 (15) | 0.9376 (2) | 0.37941 (8) | 0.0265 (4) | |
| N2 | 0.91403 (15) | 1.1341 (2) | 0.37934 (8) | 0.0277 (4) | |
| N3 | 0.56182 (15) | 0.3846 (2) | 0.60950 (7) | 0.0272 (4) | |
| N4 | 0.65832 (16) | 0.2730 (2) | 0.60375 (8) | 0.0350 (4) | |
| N5 | 0.73569 (16) | 0.3493 (2) | 0.56742 (8) | 0.0331 (4) | |
| C1 | 0.95442 (18) | 0.9778 (2) | 0.39886 (9) | 0.0252 (4) | |
| C2 | 1.10804 (18) | 1.0777 (2) | 0.34516 (9) | 0.0265 (4) | |
| C3 | 1.21525 (18) | 1.1085 (3) | 0.31418 (10) | 0.0317 (5) | |
| H3A | 1.2823 | 1.0256 | 0.3148 | 0.038* | |
| C4 | 1.2198 (2) | 1.2654 (3) | 0.28242 (10) | 0.0350 (5) | |
| H4A | 1.2918 | 1.2912 | 0.2608 | 0.042* | |
| C5 | 1.12061 (19) | 1.3873 (3) | 0.28139 (10) | 0.0343 (5) | |
| H5A | 1.1267 | 1.4936 | 0.2589 | 0.041* | |
| C6 | 1.01424 (19) | 1.3565 (3) | 0.31228 (9) | 0.0310 (5) | |
| H6A | 0.9471 | 1.4393 | 0.3112 | 0.037* | |
| C7 | 1.00880 (17) | 1.1996 (2) | 0.34504 (9) | 0.0257 (4) | |
| C8 | 0.88408 (17) | 0.8577 (2) | 0.43576 (9) | 0.0253 (4) | |
| C9 | 0.91089 (18) | 0.6817 (2) | 0.43692 (9) | 0.0283 (5) | |
| H9A | 0.9749 | 0.6389 | 0.4127 | 0.034* | |
| C10 | 0.84603 (18) | 0.5686 (2) | 0.47263 (9) | 0.0268 (4) | |
| H10A | 0.8647 | 0.4491 | 0.4721 | 0.032* | |
| C11 | 0.75345 (18) | 0.6289 (2) | 0.50939 (9) | 0.0258 (4) | |
| C12 | 0.72431 (18) | 0.8045 (3) | 0.50722 (9) | 0.0288 (5) | |
| H12A | 0.6595 | 0.8469 | 0.5310 | 0.035* | |
| C13 | 0.78828 (18) | 0.9175 (3) | 0.47105 (9) | 0.0289 (5) | |
| H13A | 0.7671 | 1.0364 | 0.4701 | 0.035* | |
| C14 | 0.68875 (18) | 0.5107 (2) | 0.55019 (9) | 0.0256 (4) | |
| C15 | 0.57733 (18) | 0.5326 (2) | 0.57719 (9) | 0.0265 (4) | |
| H15A | 0.5229 | 0.6312 | 0.5738 | 0.032* | |
| C16 | 0.46450 (19) | 0.3426 (3) | 0.65116 (9) | 0.0302 (5) | |
| H16A | 0.3817 | 0.3995 | 0.6326 | 0.036* | |
| H16B | 0.4495 | 0.2168 | 0.6499 | 0.036* | |
| C17 | 0.59651 (18) | 0.2857 (2) | 0.75702 (9) | 0.0288 (4) | |
| H17A | 0.6829 | 0.3018 | 0.7438 | 0.035* | |
| H17B | 0.5713 | 0.1634 | 0.7505 | 0.035* | |
| C18 | 0.59977 (19) | 0.3374 (3) | 0.82907 (10) | 0.0334 (5) | |
| H18A | 0.6391 | 0.4531 | 0.8364 | 0.040* | |
| H18B | 0.5099 | 0.3439 | 0.8387 | 0.040* | |
| H1A | 1.118 (2) | 0.846 (3) | 0.3930 (10) | 0.040 (6)* | |
| H2A | 0.756 (3) | 0.258 (3) | 0.8779 (12) | 0.068 (8)* |
| O1 | 0.0328 (8) | 0.0313 (8) | 0.0286 (7) | 0.0077 (6) | 0.0061 (6) | 0.0048 (6) |
| O2 | 0.0256 (8) | 0.0346 (8) | 0.0382 (8) | −0.0039 (7) | −0.0008 (6) | 0.0083 (6) |
| N1 | 0.0222 (9) | 0.0261 (9) | 0.0313 (9) | 0.0041 (7) | 0.0043 (7) | 0.0013 (7) |
| N2 | 0.0257 (9) | 0.0280 (9) | 0.0289 (9) | 0.0042 (7) | 0.0026 (7) | −0.0002 (7) |
| N3 | 0.0248 (9) | 0.0285 (9) | 0.0286 (9) | 0.0033 (7) | 0.0053 (7) | 0.0029 (7) |
| N4 | 0.0326 (10) | 0.0313 (10) | 0.0427 (10) | 0.0087 (8) | 0.0114 (8) | 0.0057 (8) |
| N5 | 0.0304 (9) | 0.0340 (10) | 0.0362 (9) | 0.0060 (8) | 0.0096 (8) | 0.0050 (8) |
| C1 | 0.0226 (10) | 0.0288 (11) | 0.0234 (10) | 0.0030 (8) | 0.0015 (8) | −0.0039 (8) |
| C2 | 0.0250 (10) | 0.0266 (10) | 0.0267 (10) | 0.0009 (8) | 0.0002 (8) | −0.0009 (8) |
| C3 | 0.0246 (11) | 0.0352 (12) | 0.0357 (11) | 0.0023 (9) | 0.0063 (9) | −0.0009 (9) |
| C4 | 0.0291 (11) | 0.0408 (13) | 0.0358 (11) | −0.0034 (10) | 0.0073 (9) | 0.0024 (9) |
| C5 | 0.0342 (12) | 0.0337 (12) | 0.0334 (11) | −0.0038 (10) | 0.0003 (9) | 0.0079 (9) |
| C6 | 0.0292 (11) | 0.0302 (11) | 0.0316 (11) | 0.0036 (9) | −0.0007 (9) | 0.0012 (9) |
| C7 | 0.0224 (10) | 0.0289 (11) | 0.0251 (10) | −0.0009 (8) | 0.0017 (8) | −0.0018 (8) |
| C8 | 0.0226 (10) | 0.0296 (11) | 0.0225 (9) | 0.0023 (8) | 0.0000 (8) | −0.0002 (8) |
| C9 | 0.0222 (10) | 0.0340 (12) | 0.0287 (10) | 0.0040 (9) | 0.0041 (8) | −0.0043 (9) |
| C10 | 0.0244 (10) | 0.0265 (10) | 0.0289 (10) | 0.0029 (8) | 0.0020 (8) | −0.0011 (8) |
| C11 | 0.0233 (10) | 0.0315 (11) | 0.0215 (9) | 0.0014 (8) | 0.0003 (8) | 0.0002 (8) |
| C12 | 0.0274 (11) | 0.0338 (11) | 0.0262 (10) | 0.0061 (9) | 0.0075 (8) | −0.0007 (9) |
| C13 | 0.0313 (11) | 0.0270 (11) | 0.0282 (10) | 0.0059 (9) | 0.0043 (9) | 0.0020 (8) |
| C14 | 0.0248 (10) | 0.0277 (10) | 0.0229 (10) | 0.0040 (8) | 0.0000 (8) | −0.0013 (8) |
| C15 | 0.0280 (11) | 0.0258 (11) | 0.0250 (10) | 0.0036 (8) | 0.0019 (8) | 0.0005 (8) |
| C16 | 0.0259 (10) | 0.0335 (11) | 0.0318 (11) | 0.0004 (9) | 0.0063 (9) | 0.0048 (9) |
| C17 | 0.0271 (11) | 0.0250 (10) | 0.0344 (11) | 0.0022 (9) | 0.0054 (9) | 0.0051 (8) |
| C18 | 0.0266 (11) | 0.0368 (12) | 0.0360 (11) | 0.0048 (9) | 0.0019 (9) | 0.0020 (9) |
| O1—C16 | 1.398 (2) | C6—C7 | 1.394 (3) |
| O1—C17 | 1.436 (2) | C6—H6A | 0.9500 |
| O2—C18 | 1.418 (2) | C8—C9 | 1.396 (3) |
| O2—H2A | 0.92 (3) | C8—C13 | 1.399 (3) |
| N1—C1 | 1.367 (2) | C9—C10 | 1.383 (3) |
| N1—C2 | 1.382 (2) | C9—H9A | 0.9500 |
| N1—H1A | 0.89 (2) | C10—C11 | 1.393 (3) |
| N2—C1 | 1.325 (2) | C10—H10A | 0.9500 |
| N2—C7 | 1.394 (2) | C11—C12 | 1.398 (3) |
| N3—C15 | 1.346 (2) | C11—C14 | 1.471 (3) |
| N3—N4 | 1.349 (2) | C12—C13 | 1.382 (3) |
| N3—C16 | 1.458 (2) | C12—H12A | 0.9500 |
| N4—N5 | 1.318 (2) | C13—H13A | 0.9500 |
| N5—C14 | 1.371 (2) | C14—C15 | 1.374 (3) |
| C1—C8 | 1.465 (3) | C15—H15A | 0.9500 |
| C2—C3 | 1.390 (3) | C16—H16A | 0.9900 |
| C2—C7 | 1.404 (3) | C16—H16B | 0.9900 |
| C3—C4 | 1.383 (3) | C17—C18 | 1.506 (3) |
| C3—H3A | 0.9500 | C17—H17A | 0.9900 |
| C4—C5 | 1.402 (3) | C17—H17B | 0.9900 |
| C4—H4A | 0.9500 | C18—H18A | 0.9900 |
| C5—C6 | 1.381 (3) | C18—H18B | 0.9900 |
| C5—H5A | 0.9500 | ||
| C16—O1—C17 | 115.06 (14) | C8—C9—H9A | 119.4 |
| C18—O2—H2A | 104.2 (16) | C9—C10—C11 | 120.37 (18) |
| C1—N1—C2 | 107.60 (16) | C9—C10—H10A | 119.8 |
| C1—N1—H1A | 125.3 (13) | C11—C10—H10A | 119.8 |
| C2—N1—H1A | 126.2 (14) | C10—C11—C12 | 118.60 (18) |
| C1—N2—C7 | 105.41 (15) | C10—C11—C14 | 120.69 (17) |
| C15—N3—N4 | 110.95 (15) | C12—C11—C14 | 120.70 (17) |
| C15—N3—C16 | 128.43 (16) | C13—C12—C11 | 121.04 (18) |
| N4—N3—C16 | 120.43 (15) | C13—C12—H12A | 119.5 |
| N5—N4—N3 | 107.03 (15) | C11—C12—H12A | 119.5 |
| N4—N5—C14 | 109.09 (15) | C12—C13—C8 | 120.37 (18) |
| N2—C1—N1 | 112.19 (17) | C12—C13—H13A | 119.8 |
| N2—C1—C8 | 125.05 (17) | C8—C13—H13A | 119.8 |
| N1—C1—C8 | 122.75 (17) | N5—C14—C15 | 107.68 (17) |
| N1—C2—C3 | 132.73 (18) | N5—C14—C11 | 122.44 (17) |
| N1—C2—C7 | 105.15 (16) | C15—C14—C11 | 129.88 (17) |
| C3—C2—C7 | 122.11 (18) | N3—C15—C14 | 105.25 (17) |
| C4—C3—C2 | 116.87 (19) | N3—C15—H15A | 127.4 |
| C4—C3—H3A | 121.6 | C14—C15—H15A | 127.4 |
| C2—C3—H3A | 121.6 | O1—C16—N3 | 112.07 (15) |
| C3—C4—C5 | 121.50 (19) | O1—C16—H16A | 109.2 |
| C3—C4—H4A | 119.3 | N3—C16—H16A | 109.2 |
| C5—C4—H4A | 119.3 | O1—C16—H16B | 109.2 |
| C6—C5—C4 | 121.51 (19) | N3—C16—H16B | 109.2 |
| C6—C5—H5A | 119.2 | H16A—C16—H16B | 107.9 |
| C4—C5—H5A | 119.2 | O1—C17—C18 | 106.53 (15) |
| C5—C6—C7 | 117.71 (19) | O1—C17—H17A | 110.4 |
| C5—C6—H6A | 121.1 | C18—C17—H17A | 110.4 |
| C7—C6—H6A | 121.1 | O1—C17—H17B | 110.4 |
| C6—C7—N2 | 130.04 (18) | C18—C17—H17B | 110.4 |
| C6—C7—C2 | 120.30 (18) | H17A—C17—H17B | 108.6 |
| N2—C7—C2 | 109.64 (16) | O2—C18—C17 | 111.68 (16) |
| C9—C8—C13 | 118.37 (17) | O2—C18—H18A | 109.3 |
| C9—C8—C1 | 121.16 (17) | C17—C18—H18A | 109.3 |
| C13—C8—C1 | 120.47 (17) | O2—C18—H18B | 109.3 |
| C10—C9—C8 | 121.20 (18) | C17—C18—H18B | 109.3 |
| C10—C9—H9A | 119.4 | H18A—C18—H18B | 107.9 |
| C15—N3—N4—N5 | −0.3 (2) | C13—C8—C9—C10 | −0.8 (3) |
| C16—N3—N4—N5 | −175.62 (15) | C1—C8—C9—C10 | 178.93 (16) |
| N3—N4—N5—C14 | 0.3 (2) | C8—C9—C10—C11 | −1.1 (3) |
| C7—N2—C1—N1 | 0.1 (2) | C9—C10—C11—C12 | 2.4 (3) |
| C7—N2—C1—C8 | −178.63 (17) | C9—C10—C11—C14 | −176.93 (17) |
| C2—N1—C1—N2 | 0.3 (2) | C10—C11—C12—C13 | −1.9 (3) |
| C2—N1—C1—C8 | 179.09 (16) | C14—C11—C12—C13 | 177.50 (17) |
| C1—N1—C2—C3 | −179.47 (19) | C11—C12—C13—C8 | 0.0 (3) |
| C1—N1—C2—C7 | −0.60 (19) | C9—C8—C13—C12 | 1.4 (3) |
| N1—C2—C3—C4 | 178.25 (19) | C1—C8—C13—C12 | −178.36 (17) |
| C7—C2—C3—C4 | −0.5 (3) | N4—N5—C14—C15 | −0.3 (2) |
| C2—C3—C4—C5 | −0.2 (3) | N4—N5—C14—C11 | −179.91 (16) |
| C3—C4—C5—C6 | 0.3 (3) | C10—C11—C14—N5 | 16.1 (3) |
| C4—C5—C6—C7 | 0.3 (3) | C12—C11—C14—N5 | −163.22 (17) |
| C5—C6—C7—N2 | −179.28 (18) | C10—C11—C14—C15 | −163.43 (18) |
| C5—C6—C7—C2 | −1.0 (3) | C12—C11—C14—C15 | 17.2 (3) |
| C1—N2—C7—C6 | 177.95 (19) | N4—N3—C15—C14 | 0.1 (2) |
| C1—N2—C7—C2 | −0.5 (2) | C16—N3—C15—C14 | 174.99 (17) |
| N1—C2—C7—C6 | −177.94 (16) | N5—C14—C15—N3 | 0.1 (2) |
| C3—C2—C7—C6 | 1.1 (3) | C11—C14—C15—N3 | 179.71 (18) |
| N1—C2—C7—N2 | 0.7 (2) | C17—O1—C16—N3 | −77.18 (19) |
| C3—C2—C7—N2 | 179.71 (16) | C15—N3—C16—O1 | −85.9 (2) |
| N2—C1—C8—C9 | 160.37 (18) | N4—N3—C16—O1 | 88.6 (2) |
| N1—C1—C8—C9 | −18.3 (3) | C16—O1—C17—C18 | −166.70 (15) |
| N2—C1—C8—C13 | −19.9 (3) | O1—C17—C18—O2 | 169.44 (15) |
| N1—C1—C8—C13 | 161.50 (17) |
| H··· | ||||
| N1—H1 | 0.89 (2) | 2.50 (2) | 3.244 (2) | 141.7 (17) |
| N1—H1 | 0.89 (2) | 2.21 (2) | 3.088 (2) | 170.4 (19) |
| O2—H2 | 0.92 (3) | 1.85 (3) | 2.761 (2) | 171 (2) |
| C15—H15 | 0.95 | 2.54 | 3.271 (2) | 134 |
| C16—H16 | 0.99 | 2.54 | 3.258 (2) | 129 |
| C17—H17 | 0.99 | 2.35 | 3.279 (2) | 155 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.89 (2) | 2.50 (2) | 3.244 (2) | 141.7 (17) |
| N1—H1 | 0.89 (2) | 2.21 (2) | 3.088 (2) | 170.4 (19) |
| O2—H2 | 0.92 (3) | 1.85 (3) | 2.761 (2) | 171 (2) |
| C15—H15 | 0.95 | 2.54 | 3.271 (2) | 134 |
| C16—H16 | 0.99 | 2.54 | 3.258 (2) | 129 |
| C17—H17 | 0.99 | 2.35 | 3.279 (2) | 155 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .