Literature DB >> 22719663

2-({4-[4-(1H-Benzimidazol-2-yl)phen-yl]-1H-1,2,3-triazol-1-yl}meth-oxy)ethanol.

Abdelaaziz Ouahrouch, Moha Taourirte, Hassan B Lazrek, Jan W Bats, Joachim W Engels.   

Abstract

In the title molecule, C(18)H(17)N(5)O(2), the dihedral angle between the benzene plane and the benzimidazole plane is 19.8 (1)° and the angle between the benzene plane and the triazole plane is 16.7 (1)°. In the crystal, mol-ecules are connected by O-H⋯N hydrogen bonds, forming zigzag chains along the c-axis direction. The chains are connected by bifurcated N-H⋯(N,N) hydrogen bonds into layers parallel to (100). These layers are connected along the a-axis direction by weak C-H⋯O contacts, forming a three-dimensional network.

Entities:  

Year:  2012        PMID: 22719663      PMCID: PMC3379465          DOI: 10.1107/S1600536812023410

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the bioactivity of benzimidazoles, see: Tebbe et al. (1997 ▶); Andrzejewska et al. (2002 ▶); Navarrete-Vázquez et al. (2003 ▶); Terzioglu et al. (2004 ▶); Özden et al. (2005 ▶). For the bioactivity of 1,2,3-triazoles, see: Chen et al. (2000 ▶); Manfredini et al. (2000 ▶). For the synthetic methods, see: Huisgen (1963 ▶); Crisp & Flynn (1993 ▶); Wu et al. (2004 ▶); Navarrete-Vázquez et al. (2007 ▶); Krim et al. (2009 ▶).

Experimental

Crystal data

C18H17N5O2 M = 335.37 Monoclinic, a = 10.4449 (5) Å b = 7.7754 (4) Å c = 20.2119 (10) Å β = 99.354 (1)° V = 1619.65 (14) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 170 K 0.40 × 0.32 × 0.11 mm

Data collection

Siemens SMART 1K CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.953, T max = 0.990 15768 measured reflections 3295 independent reflections 2562 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.102 S = 1.14 3295 reflections 235 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART (Siemens, 1995 ▶); cell refinement: SAINT (Siemens, 1995 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812023410/nc2282sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812023410/nc2282Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812023410/nc2282Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H17N5O2F(000) = 704
Mr = 335.37Dx = 1.375 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8027 reflections
a = 10.4449 (5) Åθ = 3–24°
b = 7.7754 (4) ŵ = 0.09 mm1
c = 20.2119 (10) ÅT = 170 K
β = 99.354 (1)°Block, yellow
V = 1619.65 (14) Å30.40 × 0.32 × 0.11 mm
Z = 4
Siemens SMART 1K CCD diffractometer3295 independent reflections
Radiation source: normal-focus sealed tube2562 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.047
ω scansθmax = 26.8°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −13→13
Tmin = 0.953, Tmax = 0.990k = −9→9
15768 measured reflectionsl = −25→25
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.059H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.102w = 1/[σ2(Fo2) + (0.023P)2 + 0.6P] where P = (Fo2 + 2Fc2)/3
S = 1.14(Δ/σ)max = 0.001
3295 reflectionsΔρmax = 0.20 e Å3
235 parametersΔρmin = −0.19 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0056 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.50237 (13)0.39456 (17)0.71767 (6)0.0308 (3)
O20.67189 (14)0.21899 (18)0.87378 (7)0.0335 (4)
N11.07016 (15)0.9376 (2)0.37941 (8)0.0265 (4)
N20.91403 (15)1.1341 (2)0.37934 (8)0.0277 (4)
N30.56182 (15)0.3846 (2)0.60950 (7)0.0272 (4)
N40.65832 (16)0.2730 (2)0.60375 (8)0.0350 (4)
N50.73569 (16)0.3493 (2)0.56742 (8)0.0331 (4)
C10.95442 (18)0.9778 (2)0.39886 (9)0.0252 (4)
C21.10804 (18)1.0777 (2)0.34516 (9)0.0265 (4)
C31.21525 (18)1.1085 (3)0.31418 (10)0.0317 (5)
H3A1.28231.02560.31480.038*
C41.2198 (2)1.2654 (3)0.28242 (10)0.0350 (5)
H4A1.29181.29120.26080.042*
C51.12061 (19)1.3873 (3)0.28139 (10)0.0343 (5)
H5A1.12671.49360.25890.041*
C61.01424 (19)1.3565 (3)0.31228 (9)0.0310 (5)
H6A0.94711.43930.31120.037*
C71.00880 (17)1.1996 (2)0.34504 (9)0.0257 (4)
C80.88408 (17)0.8577 (2)0.43576 (9)0.0253 (4)
C90.91089 (18)0.6817 (2)0.43692 (9)0.0283 (5)
H9A0.97490.63890.41270.034*
C100.84603 (18)0.5686 (2)0.47263 (9)0.0268 (4)
H10A0.86470.44910.47210.032*
C110.75345 (18)0.6289 (2)0.50939 (9)0.0258 (4)
C120.72431 (18)0.8045 (3)0.50722 (9)0.0288 (5)
H12A0.65950.84690.53100.035*
C130.78828 (18)0.9175 (3)0.47105 (9)0.0289 (5)
H13A0.76711.03640.47010.035*
C140.68875 (18)0.5107 (2)0.55019 (9)0.0256 (4)
C150.57733 (18)0.5326 (2)0.57719 (9)0.0265 (4)
H15A0.52290.63120.57380.032*
C160.46450 (19)0.3426 (3)0.65116 (9)0.0302 (5)
H16A0.38170.39950.63260.036*
H16B0.44950.21680.64990.036*
C170.59651 (18)0.2857 (2)0.75702 (9)0.0288 (4)
H17A0.68290.30180.74380.035*
H17B0.57130.16340.75050.035*
C180.59977 (19)0.3374 (3)0.82907 (10)0.0334 (5)
H18A0.63910.45310.83640.040*
H18B0.50990.34390.83870.040*
H1A1.118 (2)0.846 (3)0.3930 (10)0.040 (6)*
H2A0.756 (3)0.258 (3)0.8779 (12)0.068 (8)*
U11U22U33U12U13U23
O10.0328 (8)0.0313 (8)0.0286 (7)0.0077 (6)0.0061 (6)0.0048 (6)
O20.0256 (8)0.0346 (8)0.0382 (8)−0.0039 (7)−0.0008 (6)0.0083 (6)
N10.0222 (9)0.0261 (9)0.0313 (9)0.0041 (7)0.0043 (7)0.0013 (7)
N20.0257 (9)0.0280 (9)0.0289 (9)0.0042 (7)0.0026 (7)−0.0002 (7)
N30.0248 (9)0.0285 (9)0.0286 (9)0.0033 (7)0.0053 (7)0.0029 (7)
N40.0326 (10)0.0313 (10)0.0427 (10)0.0087 (8)0.0114 (8)0.0057 (8)
N50.0304 (9)0.0340 (10)0.0362 (9)0.0060 (8)0.0096 (8)0.0050 (8)
C10.0226 (10)0.0288 (11)0.0234 (10)0.0030 (8)0.0015 (8)−0.0039 (8)
C20.0250 (10)0.0266 (10)0.0267 (10)0.0009 (8)0.0002 (8)−0.0009 (8)
C30.0246 (11)0.0352 (12)0.0357 (11)0.0023 (9)0.0063 (9)−0.0009 (9)
C40.0291 (11)0.0408 (13)0.0358 (11)−0.0034 (10)0.0073 (9)0.0024 (9)
C50.0342 (12)0.0337 (12)0.0334 (11)−0.0038 (10)0.0003 (9)0.0079 (9)
C60.0292 (11)0.0302 (11)0.0316 (11)0.0036 (9)−0.0007 (9)0.0012 (9)
C70.0224 (10)0.0289 (11)0.0251 (10)−0.0009 (8)0.0017 (8)−0.0018 (8)
C80.0226 (10)0.0296 (11)0.0225 (9)0.0023 (8)0.0000 (8)−0.0002 (8)
C90.0222 (10)0.0340 (12)0.0287 (10)0.0040 (9)0.0041 (8)−0.0043 (9)
C100.0244 (10)0.0265 (10)0.0289 (10)0.0029 (8)0.0020 (8)−0.0011 (8)
C110.0233 (10)0.0315 (11)0.0215 (9)0.0014 (8)0.0003 (8)0.0002 (8)
C120.0274 (11)0.0338 (11)0.0262 (10)0.0061 (9)0.0075 (8)−0.0007 (9)
C130.0313 (11)0.0270 (11)0.0282 (10)0.0059 (9)0.0043 (9)0.0020 (8)
C140.0248 (10)0.0277 (10)0.0229 (10)0.0040 (8)0.0000 (8)−0.0013 (8)
C150.0280 (11)0.0258 (11)0.0250 (10)0.0036 (8)0.0019 (8)0.0005 (8)
C160.0259 (10)0.0335 (11)0.0318 (11)0.0004 (9)0.0063 (9)0.0048 (9)
C170.0271 (11)0.0250 (10)0.0344 (11)0.0022 (9)0.0054 (9)0.0051 (8)
C180.0266 (11)0.0368 (12)0.0360 (11)0.0048 (9)0.0019 (9)0.0020 (9)
O1—C161.398 (2)C6—C71.394 (3)
O1—C171.436 (2)C6—H6A0.9500
O2—C181.418 (2)C8—C91.396 (3)
O2—H2A0.92 (3)C8—C131.399 (3)
N1—C11.367 (2)C9—C101.383 (3)
N1—C21.382 (2)C9—H9A0.9500
N1—H1A0.89 (2)C10—C111.393 (3)
N2—C11.325 (2)C10—H10A0.9500
N2—C71.394 (2)C11—C121.398 (3)
N3—C151.346 (2)C11—C141.471 (3)
N3—N41.349 (2)C12—C131.382 (3)
N3—C161.458 (2)C12—H12A0.9500
N4—N51.318 (2)C13—H13A0.9500
N5—C141.371 (2)C14—C151.374 (3)
C1—C81.465 (3)C15—H15A0.9500
C2—C31.390 (3)C16—H16A0.9900
C2—C71.404 (3)C16—H16B0.9900
C3—C41.383 (3)C17—C181.506 (3)
C3—H3A0.9500C17—H17A0.9900
C4—C51.402 (3)C17—H17B0.9900
C4—H4A0.9500C18—H18A0.9900
C5—C61.381 (3)C18—H18B0.9900
C5—H5A0.9500
C16—O1—C17115.06 (14)C8—C9—H9A119.4
C18—O2—H2A104.2 (16)C9—C10—C11120.37 (18)
C1—N1—C2107.60 (16)C9—C10—H10A119.8
C1—N1—H1A125.3 (13)C11—C10—H10A119.8
C2—N1—H1A126.2 (14)C10—C11—C12118.60 (18)
C1—N2—C7105.41 (15)C10—C11—C14120.69 (17)
C15—N3—N4110.95 (15)C12—C11—C14120.70 (17)
C15—N3—C16128.43 (16)C13—C12—C11121.04 (18)
N4—N3—C16120.43 (15)C13—C12—H12A119.5
N5—N4—N3107.03 (15)C11—C12—H12A119.5
N4—N5—C14109.09 (15)C12—C13—C8120.37 (18)
N2—C1—N1112.19 (17)C12—C13—H13A119.8
N2—C1—C8125.05 (17)C8—C13—H13A119.8
N1—C1—C8122.75 (17)N5—C14—C15107.68 (17)
N1—C2—C3132.73 (18)N5—C14—C11122.44 (17)
N1—C2—C7105.15 (16)C15—C14—C11129.88 (17)
C3—C2—C7122.11 (18)N3—C15—C14105.25 (17)
C4—C3—C2116.87 (19)N3—C15—H15A127.4
C4—C3—H3A121.6C14—C15—H15A127.4
C2—C3—H3A121.6O1—C16—N3112.07 (15)
C3—C4—C5121.50 (19)O1—C16—H16A109.2
C3—C4—H4A119.3N3—C16—H16A109.2
C5—C4—H4A119.3O1—C16—H16B109.2
C6—C5—C4121.51 (19)N3—C16—H16B109.2
C6—C5—H5A119.2H16A—C16—H16B107.9
C4—C5—H5A119.2O1—C17—C18106.53 (15)
C5—C6—C7117.71 (19)O1—C17—H17A110.4
C5—C6—H6A121.1C18—C17—H17A110.4
C7—C6—H6A121.1O1—C17—H17B110.4
C6—C7—N2130.04 (18)C18—C17—H17B110.4
C6—C7—C2120.30 (18)H17A—C17—H17B108.6
N2—C7—C2109.64 (16)O2—C18—C17111.68 (16)
C9—C8—C13118.37 (17)O2—C18—H18A109.3
C9—C8—C1121.16 (17)C17—C18—H18A109.3
C13—C8—C1120.47 (17)O2—C18—H18B109.3
C10—C9—C8121.20 (18)C17—C18—H18B109.3
C10—C9—H9A119.4H18A—C18—H18B107.9
C15—N3—N4—N5−0.3 (2)C13—C8—C9—C10−0.8 (3)
C16—N3—N4—N5−175.62 (15)C1—C8—C9—C10178.93 (16)
N3—N4—N5—C140.3 (2)C8—C9—C10—C11−1.1 (3)
C7—N2—C1—N10.1 (2)C9—C10—C11—C122.4 (3)
C7—N2—C1—C8−178.63 (17)C9—C10—C11—C14−176.93 (17)
C2—N1—C1—N20.3 (2)C10—C11—C12—C13−1.9 (3)
C2—N1—C1—C8179.09 (16)C14—C11—C12—C13177.50 (17)
C1—N1—C2—C3−179.47 (19)C11—C12—C13—C80.0 (3)
C1—N1—C2—C7−0.60 (19)C9—C8—C13—C121.4 (3)
N1—C2—C3—C4178.25 (19)C1—C8—C13—C12−178.36 (17)
C7—C2—C3—C4−0.5 (3)N4—N5—C14—C15−0.3 (2)
C2—C3—C4—C5−0.2 (3)N4—N5—C14—C11−179.91 (16)
C3—C4—C5—C60.3 (3)C10—C11—C14—N516.1 (3)
C4—C5—C6—C70.3 (3)C12—C11—C14—N5−163.22 (17)
C5—C6—C7—N2−179.28 (18)C10—C11—C14—C15−163.43 (18)
C5—C6—C7—C2−1.0 (3)C12—C11—C14—C1517.2 (3)
C1—N2—C7—C6177.95 (19)N4—N3—C15—C140.1 (2)
C1—N2—C7—C2−0.5 (2)C16—N3—C15—C14174.99 (17)
N1—C2—C7—C6−177.94 (16)N5—C14—C15—N30.1 (2)
C3—C2—C7—C61.1 (3)C11—C14—C15—N3179.71 (18)
N1—C2—C7—N20.7 (2)C17—O1—C16—N3−77.18 (19)
C3—C2—C7—N2179.71 (16)C15—N3—C16—O1−85.9 (2)
N2—C1—C8—C9160.37 (18)N4—N3—C16—O188.6 (2)
N1—C1—C8—C9−18.3 (3)C16—O1—C17—C18−166.70 (15)
N2—C1—C8—C13−19.9 (3)O1—C17—C18—O2169.44 (15)
N1—C1—C8—C13161.50 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N4i0.89 (2)2.50 (2)3.244 (2)141.7 (17)
N1—H1A···N5i0.89 (2)2.21 (2)3.088 (2)170.4 (19)
O2—H2A···N2ii0.92 (3)1.85 (3)2.761 (2)171 (2)
C15—H15A···O2iii0.952.543.271 (2)134
C16—H16A···O2iii0.992.543.258 (2)129
C17—H17B···O1iv0.992.353.279 (2)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯N4i0.89 (2)2.50 (2)3.244 (2)141.7 (17)
N1—H1A⋯N5i0.89 (2)2.21 (2)3.088 (2)170.4 (19)
O2—H2A⋯N2ii0.92 (3)1.85 (3)2.761 (2)171 (2)
C15—H15A⋯O2iii0.952.543.271 (2)134
C16—H16A⋯O2iii0.992.543.258 (2)129
C17—H17B⋯O1iv0.992.353.279 (2)155

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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