| Literature DB >> 22719655 |
Christian Neis1, Günter J Merten, Kaspar Hegetschweiler.
Abstract
The 2-hy-droxy-cyclo-hexane-1,3,5-triaminium (= H(3)L(3+)) cation of the title compound, 3C(6)H(18)N(3)O(3+)·8Cl(-)·HSO(4) (-)·2H(2)O, exhibits a cyclo-hexane chair with three equatorial ammonium groups and one axial hy-droxy group in an all-cis configuration. The hydrogen sulfate anion and two water mol-ecules lie on or in proximity to a threefold axis and are disordered. The crystal structure features N-H⋯Cl and O-H⋯Cl hydrogen bonds. Three C(3)-symmetric motifs can be identified in the structure: (i) Two chloride ions (on the C(3)-axis) together with three H(3)L(3+) cations constitute an [(H(3)L)(3)Cl(2)](7+) cage. (ii) The lipophilic C(6)H(6)-sides of three H(3)L(3+) cations, which are oriented directly towards the C(3)-axis, generate a lipophilic void. The void is filled with the disordered water mol-ecules and with the disordered part of the hydrogen sulfate ion. The hydrogen atoms of these disordered moieties were not located. (iii) Three H(3)L(3+) cations together with one HSO(4) (-) and three Cl(-) counter-ions form an [(HSO(4))(H(3)L)(3)Cl(3)](5+) cage. Looking along the C(3)-axis, these three motifs are arranged in the order (cage 1)⋯(lipophilic void)⋯(cage 2). The crystal studied was found to be a racemic twin.Entities:
Year: 2012 PMID: 22719655 PMCID: PMC3379457 DOI: 10.1107/S1600536812022374
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 3C6H18N3O3+·8Cl−·HSO4−·2H2O | |
| Mo | |
| Trigonal, | Cell parameters from 5824 reflections |
| θ = 3.3–38.0° | |
| µ = 0.66 mm−1 | |
| Prism, colourless | |
| 0.48 × 0.40 × 0.32 mm |
| Stoe IPDS image plate diffractometer | 2442 reflections with |
| Radiation source: fine-focus sealed tube | |
| Graphite monochromator | θmax = 25.5°, θmin = 2.6° |
| phi scans | |
| 14259 measured reflections | |
| 2518 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 2518 reflections | Δρmax = 0.75 e Å−3 |
| 169 parameters | Δρmin = −0.32 e Å−3 |
| 11 restraints | Absolute structure: Flack (1983), 1255 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.41 (7) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| Cl1 | 0.25081 (6) | 0.28514 (6) | 0.523148 (15) | 0.02924 (18) | |
| C1 | 0.2004 (2) | 0.3248 (2) | 0.40899 (6) | 0.0217 (5) | |
| H1 | 0.2232 | 0.4124 | 0.4110 | 0.026* | |
| N1 | 0.0651 (2) | 0.2485 (2) | 0.40665 (6) | 0.0260 (5) | |
| H11N | 0.049 (4) | 0.172 (2) | 0.4029 (10) | 0.039* | |
| H12N | 0.033 (3) | 0.264 (4) | 0.4234 (7) | 0.039* | |
| H13N | 0.037 (4) | 0.269 (4) | 0.3907 (7) | 0.039* | |
| C2 | 0.2434 (2) | 0.2867 (2) | 0.43791 (6) | 0.0201 (5) | |
| H2 | 0.2079 | 0.3027 | 0.4566 | 0.024* | |
| O2 | 0.20562 (18) | 0.16022 (19) | 0.43620 (4) | 0.0257 (4) | |
| H2O | 0.153 (3) | 0.111 (3) | 0.4479 (8) | 0.039* | |
| C3 | 0.3833 (2) | 0.3621 (3) | 0.43928 (6) | 0.0221 (5) | |
| H3 | 0.4084 | 0.4501 | 0.4418 | 0.027* | |
| N3 | 0.4276 (2) | 0.3228 (3) | 0.46641 (5) | 0.0272 (5) | |
| H31N | 0.382 (3) | 0.321 (4) | 0.4818 (7) | 0.041* | |
| H32N | 0.418 (4) | 0.248 (2) | 0.4636 (9) | 0.041* | |
| H33N | 0.5097 (18) | 0.365 (3) | 0.4673 (10) | 0.041* | |
| C4 | 0.4447 (2) | 0.3482 (3) | 0.41051 (6) | 0.0232 (5) | |
| H4A | 0.5343 | 0.4014 | 0.4121 | 0.028* | |
| H4B | 0.4262 | 0.2627 | 0.4086 | 0.028* | |
| C5 | 0.3974 (3) | 0.3838 (2) | 0.38230 (6) | 0.0224 (5) | |
| H5 | 0.4231 | 0.4723 | 0.3836 | 0.027* | |
| N5 | 0.4537 (2) | 0.3630 (2) | 0.35426 (5) | 0.0255 (5) | |
| H51N | 0.5342 (18) | 0.413 (3) | 0.3532 (9) | 0.038* | |
| H52N | 0.424 (4) | 0.373 (4) | 0.3361 (6) | 0.038* | |
| H53N | 0.438 (4) | 0.287 (2) | 0.3530 (9) | 0.038* | |
| C6 | 0.2583 (2) | 0.3090 (3) | 0.37982 (6) | 0.0214 (5) | |
| H6A | 0.2323 | 0.2218 | 0.3769 | 0.026* | |
| H6B | 0.2308 | 0.3365 | 0.3618 | 0.026* | |
| S1 | 0.6667 | 0.3333 | 0.51658 (4) | 0.0494 (4) | |
| O11 | 0.6667 | 0.3333 | 0.48521 (12) | 0.0487 (11) | |
| O12 | 0.5574 (4) | 0.3375 (4) | 0.52786 (9) | 0.0796 (11) | |
| Cl2 | 0.65819 (7) | 0.61189 (6) | 0.460229 (16) | 0.03246 (19) | |
| Cl3 | 0.0000 | 0.0000 | 0.48180 (3) | 0.0243 (3) | |
| Cl4 | 0.3333 | 0.6667 | 0.53799 (3) | 0.0309 (3) | |
| O1W | 0.3333 | 0.6667 | 0.4283 (5) | 0.113 (6)* | 0.502 (13) |
| O2W | 0.2408 (13) | 0.5251 (14) | 0.4717 (3) | 0.127 (5)* | 0.498 (13) |
| Cl1 | 0.0288 (3) | 0.0305 (3) | 0.0258 (3) | 0.0128 (3) | −0.0011 (3) | −0.0080 (3) |
| C1 | 0.0228 (13) | 0.0266 (13) | 0.0200 (12) | 0.0155 (11) | −0.0017 (10) | −0.0011 (10) |
| N1 | 0.0236 (12) | 0.0382 (13) | 0.0228 (12) | 0.0205 (11) | 0.0001 (10) | 0.0006 (10) |
| C2 | 0.0195 (12) | 0.0250 (13) | 0.0157 (12) | 0.0111 (11) | −0.0007 (9) | −0.0012 (9) |
| O2 | 0.0232 (10) | 0.0249 (10) | 0.0256 (10) | 0.0094 (8) | 0.0020 (8) | 0.0070 (8) |
| C3 | 0.0224 (13) | 0.0241 (13) | 0.0164 (12) | 0.0090 (11) | −0.0022 (10) | −0.0020 (10) |
| N3 | 0.0227 (12) | 0.0378 (14) | 0.0165 (12) | 0.0117 (11) | −0.0040 (9) | 0.0008 (10) |
| C4 | 0.0165 (12) | 0.0293 (14) | 0.0211 (14) | 0.0096 (12) | 0.0013 (10) | 0.0035 (11) |
| C5 | 0.0253 (13) | 0.0216 (12) | 0.0184 (12) | 0.0103 (11) | 0.0051 (10) | 0.0041 (10) |
| N5 | 0.0250 (12) | 0.0334 (13) | 0.0171 (11) | 0.0139 (10) | 0.0029 (9) | 0.0042 (10) |
| C6 | 0.0213 (12) | 0.0262 (13) | 0.0167 (12) | 0.0119 (11) | 0.0011 (9) | 0.0039 (10) |
| S1 | 0.0587 (6) | 0.0587 (6) | 0.0308 (7) | 0.0294 (3) | 0.000 | 0.000 |
| O11 | 0.0493 (17) | 0.0493 (17) | 0.047 (3) | 0.0246 (8) | 0.000 | 0.000 |
| O12 | 0.073 (2) | 0.085 (3) | 0.090 (2) | 0.046 (2) | 0.041 (2) | 0.003 (2) |
| Cl2 | 0.0304 (4) | 0.0296 (3) | 0.0231 (3) | 0.0044 (3) | −0.0005 (3) | 0.0005 (3) |
| Cl3 | 0.0252 (3) | 0.0252 (3) | 0.0225 (5) | 0.01259 (17) | 0.000 | 0.000 |
| Cl4 | 0.0292 (4) | 0.0292 (4) | 0.0343 (6) | 0.01459 (19) | 0.000 | 0.000 |
| C1—N1 | 1.490 (3) | N3—H33N | 0.901 (19) |
| C1—C6 | 1.530 (4) | C4—C5 | 1.531 (4) |
| C1—C2 | 1.543 (4) | C4—H4A | 0.9900 |
| C1—H1 | 1.0000 | C4—H4B | 0.9900 |
| N1—H11N | 0.896 (19) | C5—N5 | 1.504 (4) |
| N1—H12N | 0.904 (19) | C5—C6 | 1.529 (4) |
| N1—H13N | 0.875 (19) | C5—H5 | 1.0000 |
| C2—O2 | 1.425 (3) | N5—H51N | 0.893 (19) |
| C2—C3 | 1.536 (4) | N5—H52N | 0.912 (19) |
| C2—H2 | 1.0000 | N5—H53N | 0.881 (19) |
| O2—H2O | 0.823 (19) | C6—H6A | 0.9900 |
| C3—N3 | 1.497 (3) | C6—H6B | 0.9900 |
| C3—C4 | 1.531 (4) | S1—O11 | 1.368 (5) |
| C3—H3 | 1.0000 | S1—O12i | 1.493 (3) |
| N3—H31N | 0.876 (19) | S1—O12ii | 1.493 (3) |
| N3—H32N | 0.901 (19) | S1—O12 | 1.493 (3) |
| N1—C1—C6 | 109.2 (2) | C5—C4—C3 | 109.2 (2) |
| N1—C1—C2 | 108.9 (2) | C5—C4—H4A | 109.8 |
| C6—C1—C2 | 111.8 (2) | C3—C4—H4A | 109.8 |
| N1—C1—H1 | 108.9 | C5—C4—H4B | 109.8 |
| C6—C1—H1 | 108.9 | C3—C4—H4B | 109.8 |
| C2—C1—H1 | 108.9 | H4A—C4—H4B | 108.3 |
| C1—N1—H11N | 106 (3) | N5—C5—C6 | 109.5 (2) |
| C1—N1—H12N | 108 (3) | N5—C5—C4 | 108.2 (2) |
| H11N—N1—H12N | 119 (4) | C6—C5—C4 | 111.9 (2) |
| C1—N1—H13N | 112 (3) | N5—C5—H5 | 109.1 |
| H11N—N1—H13N | 105 (4) | C6—C5—H5 | 109.1 |
| H12N—N1—H13N | 107 (4) | C4—C5—H5 | 109.1 |
| O2—C2—C3 | 109.6 (2) | C5—N5—H51N | 113 (3) |
| O2—C2—C1 | 109.6 (2) | C5—N5—H52N | 114 (3) |
| C3—C2—C1 | 108.3 (2) | H51N—N5—H52N | 105 (4) |
| O2—C2—H2 | 109.8 | C5—N5—H53N | 112 (3) |
| C3—C2—H2 | 109.8 | H51N—N5—H53N | 109 (4) |
| C1—C2—H2 | 109.8 | H52N—N5—H53N | 103 (4) |
| C2—O2—H2O | 121 (3) | C5—C6—C1 | 109.8 (2) |
| N3—C3—C4 | 108.3 (2) | C5—C6—H6A | 109.7 |
| N3—C3—C2 | 109.3 (2) | C1—C6—H6A | 109.7 |
| C4—C3—C2 | 112.9 (2) | C5—C6—H6B | 109.7 |
| N3—C3—H3 | 108.7 | C1—C6—H6B | 109.7 |
| C4—C3—H3 | 108.7 | H6A—C6—H6B | 108.2 |
| C2—C3—H3 | 108.7 | O11—S1—O12i | 109.24 (18) |
| C3—N3—H31N | 105 (3) | O11—S1—O12ii | 109.24 (19) |
| C3—N3—H32N | 111 (3) | O12i—S1—O12ii | 109.70 (18) |
| H31N—N3—H32N | 110 (4) | O11—S1—O12 | 109.24 (18) |
| C3—N3—H33N | 110 (3) | O12i—S1—O12 | 109.70 (18) |
| H31N—N3—H33N | 122 (4) | O12ii—S1—O12 | 109.70 (18) |
| H32N—N3—H33N | 98 (4) | ||
| N1—C1—C2—O2 | 58.1 (3) | N3—C3—C4—C5 | 178.1 (2) |
| C6—C1—C2—O2 | −62.7 (3) | C2—C3—C4—C5 | 56.8 (3) |
| N1—C1—C2—C3 | 177.6 (2) | C3—C4—C5—N5 | −177.0 (2) |
| C6—C1—C2—C3 | 56.8 (3) | C3—C4—C5—C6 | −56.3 (3) |
| O2—C2—C3—N3 | −58.0 (3) | N5—C5—C6—C1 | 177.2 (2) |
| C1—C2—C3—N3 | −177.5 (2) | C4—C5—C6—C1 | 57.2 (3) |
| O2—C2—C3—C4 | 62.7 (3) | N1—C1—C6—C5 | −178.3 (2) |
| C1—C2—C3—C4 | −56.8 (3) | C2—C1—C6—C5 | −57.7 (3) |
| H··· | ||||
| N1—H11 | 0.90 (2) | 2.38 (2) | 3.218 (3) | 155 (4) |
| N1—H12 | 0.90 (2) | 2.36 (2) | 3.241 (3) | 166 (4) |
| N1—H13 | 0.88 (2) | 2.29 (2) | 3.143 (3) | 165 (4) |
| O2—H2 | 0.82 (2) | 2.28 (2) | 3.092 (2) | 170 (4) |
| N3—H31 | 0.88 (2) | 2.34 (2) | 3.208 (3) | 171 (4) |
| N3—H32 | 0.90 (2) | 2.39 (2) | 3.289 (3) | 176 (4) |
| N3—H33 | 0.90 (2) | 2.35 (3) | 3.072 (3) | 137 (3) |
| N3—H33 | 0.90 (2) | 2.74 (3) | 3.361 (3) | 127 (3) |
| N5—H51 | 0.89 (2) | 2.39 (3) | 3.184 (3) | 148 (4) |
| N5—H52 | 0.91 (2) | 2.26 (2) | 3.171 (3) | 172 (4) |
| N5—H53 | 0.88 (2) | 2.32 (2) | 3.194 (3) | 171 (4) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H11 | 0.90 (2) | 2.38 (2) | 3.218 (3) | 155 (4) |
| N1—H12 | 0.90 (2) | 2.36 (2) | 3.241 (3) | 166 (4) |
| N1—H13 | 0.88 (2) | 2.29 (2) | 3.143 (3) | 165 (4) |
| O2—H2 | 0.82 (2) | 2.28 (2) | 3.092 (2) | 170 (4) |
| N3—H31 | 0.88 (2) | 2.34 (2) | 3.208 (3) | 171 (4) |
| N3—H32 | 0.90 (2) | 2.39 (2) | 3.289 (3) | 176 (4) |
| N3—H33 | 0.90 (2) | 2.35 (3) | 3.072 (3) | 137 (3) |
| N3—H33 | 0.90 (2) | 2.74 (3) | 3.361 (3) | 127 (3) |
| N5—H51 | 0.89 (2) | 2.39 (3) | 3.184 (3) | 148 (4) |
| N5—H52 | 0.91 (2) | 2.26 (2) | 3.171 (3) | 172 (4) |
| N5—H53 | 0.88 (2) | 2.32 (2) | 3.194 (3) | 171 (4) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .