Literature DB >> 22719655

Tris(cis-2-hy-droxy-cyclo-hexane-1,3,5-tri-aminium) hydrogen sulfate octa-chloride dihydrate.

Christian Neis1, Günter J Merten, Kaspar Hegetschweiler.   

Abstract

The 2-hy-droxy-cyclo-hexane-1,3,5-triaminium (= H(3)L(3+)) cation of the title compound, 3C(6)H(18)N(3)O(3+)·8Cl(-)·HSO(4) (-)·2H(2)O, exhibits a cyclo-hexane chair with three equatorial ammonium groups and one axial hy-droxy group in an all-cis configuration. The hydrogen sulfate anion and two water mol-ecules lie on or in proximity to a threefold axis and are disordered. The crystal structure features N-H⋯Cl and O-H⋯Cl hydrogen bonds. Three C(3)-symmetric motifs can be identified in the structure: (i) Two chloride ions (on the C(3)-axis) together with three H(3)L(3+) cations constitute an [(H(3)L)(3)Cl(2)](7+) cage. (ii) The lipophilic C(6)H(6)-sides of three H(3)L(3+) cations, which are oriented directly towards the C(3)-axis, generate a lipophilic void. The void is filled with the disordered water mol-ecules and with the disordered part of the hydrogen sulfate ion. The hydrogen atoms of these disordered moieties were not located. (iii) Three H(3)L(3+) cations together with one HSO(4) (-) and three Cl(-) counter-ions form an [(HSO(4))(H(3)L)(3)Cl(3)](5+) cage. Looking along the C(3)-axis, these three motifs are arranged in the order (cage 1)⋯(lipophilic void)⋯(cage 2). The crystal studied was found to be a racemic twin.

Entities:  

Year:  2012        PMID: 22719655      PMCID: PMC3379457          DOI: 10.1107/S1600536812022374

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The synthesis of a sulfate salt of H3 L 3+ as well as metal complex formation of L has been reported by Merten et al. (2012 ▶). For the synthesis of a diastereomeric form of L, see: Castellanos et al. (1980 ▶). The hydrogen-bonding ability of axial versus equatorial hy­droxy groups is discussed by Bonnet et al. (2005 ▶), and further examples in related structures are provided by Neis, Merten & Hegetschweiler (2012 ▶) and Neis, Merten, Altenhofer & Hegetschweiler (2012 ▶). Puckering parameters have been calculated according to Cremer & Pople (1975 ▶). For the treatment of hydrogen atoms in SHELXL, see: Müller et al. (2006 ▶).

Experimental

Crystal data

3C6H18N3O3+·8Cl−·HSO4 −·2H2O M = 861.40 Trigonal, a = 12.6549 (18) Å c = 43.616 (9) Å V = 6049.2 (17) Å3 Z = 6 Mo Kα radiation μ = 0.66 mm−1 T = 200 K 0.48 × 0.40 × 0.32 mm

Data collection

Stoe IPDS image plate diffractometer 14259 measured reflections 2518 independent reflections 2442 reflections with I > 2σ(I) R int = 0.075

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.101 S = 1.07 2518 reflections 169 parameters 11 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.75 e Å−3 Δρmin = −0.32 e Å−3 Absolute structure: Flack (1983 ▶), 1255 Friedel pairs Flack parameter: 0.41 (7) Data collection: Stoe IPDS Software (Stoe & Cie, 1997 ▶); cell refinement: Stoe IPDS Software; data reduction: Stoe IPDS Software; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812022374/nk2161sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812022374/nk2161Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
3C6H18N3O3+·8Cl·HSO4·2H2ODx = 1.419 Mg m3
Mr = 861.40Mo Kα radiation, λ = 0.71073 Å
Trigonal, R3cCell parameters from 5824 reflections
a = 12.6549 (18) Åθ = 3.3–38.0°
c = 43.616 (9) ŵ = 0.66 mm1
V = 6049.2 (17) Å3T = 200 K
Z = 6Prism, colourless
F(000) = 27240.48 × 0.40 × 0.32 mm
Stoe IPDS image plate diffractometer2442 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.075
Graphite monochromatorθmax = 25.5°, θmin = 2.6°
phi scansh = −14→15
14259 measured reflectionsk = −15→15
2518 independent reflectionsl = −52→52
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.101w = 1/[σ2(Fo2) + (0.0782P)2 + 1.7412P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
2518 reflectionsΔρmax = 0.75 e Å3
169 parametersΔρmin = −0.32 e Å3
11 restraintsAbsolute structure: Flack (1983), 1255 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.41 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl10.25081 (6)0.28514 (6)0.523148 (15)0.02924 (18)
C10.2004 (2)0.3248 (2)0.40899 (6)0.0217 (5)
H10.22320.41240.41100.026*
N10.0651 (2)0.2485 (2)0.40665 (6)0.0260 (5)
H11N0.049 (4)0.172 (2)0.4029 (10)0.039*
H12N0.033 (3)0.264 (4)0.4234 (7)0.039*
H13N0.037 (4)0.269 (4)0.3907 (7)0.039*
C20.2434 (2)0.2867 (2)0.43791 (6)0.0201 (5)
H20.20790.30270.45660.024*
O20.20562 (18)0.16022 (19)0.43620 (4)0.0257 (4)
H2O0.153 (3)0.111 (3)0.4479 (8)0.039*
C30.3833 (2)0.3621 (3)0.43928 (6)0.0221 (5)
H30.40840.45010.44180.027*
N30.4276 (2)0.3228 (3)0.46641 (5)0.0272 (5)
H31N0.382 (3)0.321 (4)0.4818 (7)0.041*
H32N0.418 (4)0.248 (2)0.4636 (9)0.041*
H33N0.5097 (18)0.365 (3)0.4673 (10)0.041*
C40.4447 (2)0.3482 (3)0.41051 (6)0.0232 (5)
H4A0.53430.40140.41210.028*
H4B0.42620.26270.40860.028*
C50.3974 (3)0.3838 (2)0.38230 (6)0.0224 (5)
H50.42310.47230.38360.027*
N50.4537 (2)0.3630 (2)0.35426 (5)0.0255 (5)
H51N0.5342 (18)0.413 (3)0.3532 (9)0.038*
H52N0.424 (4)0.373 (4)0.3361 (6)0.038*
H53N0.438 (4)0.287 (2)0.3530 (9)0.038*
C60.2583 (2)0.3090 (3)0.37982 (6)0.0214 (5)
H6A0.23230.22180.37690.026*
H6B0.23080.33650.36180.026*
S10.66670.33330.51658 (4)0.0494 (4)
O110.66670.33330.48521 (12)0.0487 (11)
O120.5574 (4)0.3375 (4)0.52786 (9)0.0796 (11)
Cl20.65819 (7)0.61189 (6)0.460229 (16)0.03246 (19)
Cl30.00000.00000.48180 (3)0.0243 (3)
Cl40.33330.66670.53799 (3)0.0309 (3)
O1W0.33330.66670.4283 (5)0.113 (6)*0.502 (13)
O2W0.2408 (13)0.5251 (14)0.4717 (3)0.127 (5)*0.498 (13)
U11U22U33U12U13U23
Cl10.0288 (3)0.0305 (3)0.0258 (3)0.0128 (3)−0.0011 (3)−0.0080 (3)
C10.0228 (13)0.0266 (13)0.0200 (12)0.0155 (11)−0.0017 (10)−0.0011 (10)
N10.0236 (12)0.0382 (13)0.0228 (12)0.0205 (11)0.0001 (10)0.0006 (10)
C20.0195 (12)0.0250 (13)0.0157 (12)0.0111 (11)−0.0007 (9)−0.0012 (9)
O20.0232 (10)0.0249 (10)0.0256 (10)0.0094 (8)0.0020 (8)0.0070 (8)
C30.0224 (13)0.0241 (13)0.0164 (12)0.0090 (11)−0.0022 (10)−0.0020 (10)
N30.0227 (12)0.0378 (14)0.0165 (12)0.0117 (11)−0.0040 (9)0.0008 (10)
C40.0165 (12)0.0293 (14)0.0211 (14)0.0096 (12)0.0013 (10)0.0035 (11)
C50.0253 (13)0.0216 (12)0.0184 (12)0.0103 (11)0.0051 (10)0.0041 (10)
N50.0250 (12)0.0334 (13)0.0171 (11)0.0139 (10)0.0029 (9)0.0042 (10)
C60.0213 (12)0.0262 (13)0.0167 (12)0.0119 (11)0.0011 (9)0.0039 (10)
S10.0587 (6)0.0587 (6)0.0308 (7)0.0294 (3)0.0000.000
O110.0493 (17)0.0493 (17)0.047 (3)0.0246 (8)0.0000.000
O120.073 (2)0.085 (3)0.090 (2)0.046 (2)0.041 (2)0.003 (2)
Cl20.0304 (4)0.0296 (3)0.0231 (3)0.0044 (3)−0.0005 (3)0.0005 (3)
Cl30.0252 (3)0.0252 (3)0.0225 (5)0.01259 (17)0.0000.000
Cl40.0292 (4)0.0292 (4)0.0343 (6)0.01459 (19)0.0000.000
C1—N11.490 (3)N3—H33N0.901 (19)
C1—C61.530 (4)C4—C51.531 (4)
C1—C21.543 (4)C4—H4A0.9900
C1—H11.0000C4—H4B0.9900
N1—H11N0.896 (19)C5—N51.504 (4)
N1—H12N0.904 (19)C5—C61.529 (4)
N1—H13N0.875 (19)C5—H51.0000
C2—O21.425 (3)N5—H51N0.893 (19)
C2—C31.536 (4)N5—H52N0.912 (19)
C2—H21.0000N5—H53N0.881 (19)
O2—H2O0.823 (19)C6—H6A0.9900
C3—N31.497 (3)C6—H6B0.9900
C3—C41.531 (4)S1—O111.368 (5)
C3—H31.0000S1—O12i1.493 (3)
N3—H31N0.876 (19)S1—O12ii1.493 (3)
N3—H32N0.901 (19)S1—O121.493 (3)
N1—C1—C6109.2 (2)C5—C4—C3109.2 (2)
N1—C1—C2108.9 (2)C5—C4—H4A109.8
C6—C1—C2111.8 (2)C3—C4—H4A109.8
N1—C1—H1108.9C5—C4—H4B109.8
C6—C1—H1108.9C3—C4—H4B109.8
C2—C1—H1108.9H4A—C4—H4B108.3
C1—N1—H11N106 (3)N5—C5—C6109.5 (2)
C1—N1—H12N108 (3)N5—C5—C4108.2 (2)
H11N—N1—H12N119 (4)C6—C5—C4111.9 (2)
C1—N1—H13N112 (3)N5—C5—H5109.1
H11N—N1—H13N105 (4)C6—C5—H5109.1
H12N—N1—H13N107 (4)C4—C5—H5109.1
O2—C2—C3109.6 (2)C5—N5—H51N113 (3)
O2—C2—C1109.6 (2)C5—N5—H52N114 (3)
C3—C2—C1108.3 (2)H51N—N5—H52N105 (4)
O2—C2—H2109.8C5—N5—H53N112 (3)
C3—C2—H2109.8H51N—N5—H53N109 (4)
C1—C2—H2109.8H52N—N5—H53N103 (4)
C2—O2—H2O121 (3)C5—C6—C1109.8 (2)
N3—C3—C4108.3 (2)C5—C6—H6A109.7
N3—C3—C2109.3 (2)C1—C6—H6A109.7
C4—C3—C2112.9 (2)C5—C6—H6B109.7
N3—C3—H3108.7C1—C6—H6B109.7
C4—C3—H3108.7H6A—C6—H6B108.2
C2—C3—H3108.7O11—S1—O12i109.24 (18)
C3—N3—H31N105 (3)O11—S1—O12ii109.24 (19)
C3—N3—H32N111 (3)O12i—S1—O12ii109.70 (18)
H31N—N3—H32N110 (4)O11—S1—O12109.24 (18)
C3—N3—H33N110 (3)O12i—S1—O12109.70 (18)
H31N—N3—H33N122 (4)O12ii—S1—O12109.70 (18)
H32N—N3—H33N98 (4)
N1—C1—C2—O258.1 (3)N3—C3—C4—C5178.1 (2)
C6—C1—C2—O2−62.7 (3)C2—C3—C4—C556.8 (3)
N1—C1—C2—C3177.6 (2)C3—C4—C5—N5−177.0 (2)
C6—C1—C2—C356.8 (3)C3—C4—C5—C6−56.3 (3)
O2—C2—C3—N3−58.0 (3)N5—C5—C6—C1177.2 (2)
C1—C2—C3—N3−177.5 (2)C4—C5—C6—C157.2 (3)
O2—C2—C3—C462.7 (3)N1—C1—C6—C5−178.3 (2)
C1—C2—C3—C4−56.8 (3)C2—C1—C6—C5−57.7 (3)
D—H···AD—HH···AD···AD—H···A
N1—H11N···Cl4iii0.90 (2)2.38 (2)3.218 (3)155 (4)
N1—H12N···Cl2iv0.90 (2)2.36 (2)3.241 (3)166 (4)
N1—H13N···Cl1v0.88 (2)2.29 (2)3.143 (3)165 (4)
O2—H2O···Cl30.82 (2)2.28 (2)3.092 (2)170 (4)
N3—H31N···Cl10.88 (2)2.34 (2)3.208 (3)171 (4)
N3—H32N···Cl2i0.90 (2)2.39 (2)3.289 (3)176 (4)
N3—H33N···O110.90 (2)2.35 (3)3.072 (3)137 (3)
N3—H33N···Cl20.90 (2)2.74 (3)3.361 (3)127 (3)
N5—H51N···Cl1vi0.89 (2)2.39 (3)3.184 (3)148 (4)
N5—H52N···Cl2v0.91 (2)2.26 (2)3.171 (3)172 (4)
N5—H53N···Cl1iii0.88 (2)2.32 (2)3.194 (3)171 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H11N⋯Cl4i0.90 (2)2.38 (2)3.218 (3)155 (4)
N1—H12N⋯Cl2ii0.90 (2)2.36 (2)3.241 (3)166 (4)
N1—H13N⋯Cl1iii0.88 (2)2.29 (2)3.143 (3)165 (4)
O2—H2O⋯Cl30.82 (2)2.28 (2)3.092 (2)170 (4)
N3—H31N⋯Cl10.88 (2)2.34 (2)3.208 (3)171 (4)
N3—H32N⋯Cl2iv0.90 (2)2.39 (2)3.289 (3)176 (4)
N3—H33N⋯O110.90 (2)2.35 (3)3.072 (3)137 (3)
N3—H33N⋯Cl20.90 (2)2.74 (3)3.361 (3)127 (3)
N5—H51N⋯Cl1v0.89 (2)2.39 (3)3.184 (3)148 (4)
N5—H52N⋯Cl2iii0.91 (2)2.26 (2)3.171 (3)172 (4)
N5—H53N⋯Cl1i0.88 (2)2.32 (2)3.194 (3)171 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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