| Literature DB >> 22590308 |
Christian Neis1, Günter J Merten, Kaspar Hegetschweiler.
Abstract
In the crystal structure of the title compound, C(6)H(16)N(2)O(3) (2+)·SO(4) (2-), each cation forms three O-H⋯O and five N-H⋯O hydrogen bonds to six neighbouring sulfate anions. In addition, interlinking of the cations by N-H⋯O interactions is also observed. The cyclo-hexane ring adopts a chair conformation with two axial hy-droxy groups. Although the separation of 2.928 Å is almost ideal for a hydrogen bond, intra-molecular hydrogen bonding between these two hy-droxy groups is not observed.Entities:
Year: 2012 PMID: 22590308 PMCID: PMC3344546 DOI: 10.1107/S1600536812016029
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H16N2O32+·SO42− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3837 reflections |
| θ = 2.6–25.0° | |
| µ = 0.34 mm−1 | |
| β = 101.46 (3)° | Prism, colourless |
| 0.30 × 0.20 × 0.15 mm | |
| Stoe IPDS image plate diffractometer | 1685 reflections with |
| Radiation source: fine-focus sealed tube | |
| Graphite monochromator | θmax = 25.0°, θmin = 2.3° |
| phi scans | |
| 6961 measured reflections | |
| 1779 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1779 reflections | (Δ/σ)max = 0.001 |
| 172 parameters | Δρmax = 0.27 e Å−3 |
| 9 restraints | Δρmin = −0.29 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C5 | 0.44604 (15) | −0.0876 (2) | 0.10574 (8) | 0.0129 (3) | |
| H5 | 0.4373 | −0.1399 | 0.0507 | 0.015* | |
| C6 | 0.35712 (15) | −0.2238 (2) | 0.15088 (8) | 0.0149 (3) | |
| H6A | 0.3961 | −0.3624 | 0.1521 | 0.018* | |
| H6B | 0.3684 | −0.1762 | 0.2061 | 0.018* | |
| C2 | 0.12716 (15) | −0.0111 (2) | 0.10691 (8) | 0.0139 (3) | |
| H2 | 0.0241 | −0.0171 | 0.0749 | 0.017* | |
| C1 | 0.19415 (15) | −0.2228 (2) | 0.11143 (8) | 0.0136 (3) | |
| H1 | 0.1839 | −0.2768 | 0.0566 | 0.016* | |
| C3 | 0.22081 (16) | 0.1251 (2) | 0.06417 (8) | 0.0137 (3) | |
| H3 | 0.2117 | 0.0722 | 0.0092 | 0.016* | |
| C4 | 0.38668 (15) | 0.1297 (2) | 0.10194 (8) | 0.0126 (3) | |
| H4 | 0.4396 | 0.2105 | 0.0674 | 0.015* | |
| N1 | 0.11358 (15) | −0.3591 (2) | 0.15750 (8) | 0.0171 (3) | |
| H1A | 0.124 (2) | −0.325 (3) | 0.2070 (9) | 0.026* | |
| H1B | 0.142 (2) | −0.481 (2) | 0.1514 (10) | 0.026* | |
| H1C | 0.0204 (17) | −0.360 (3) | 0.1393 (10) | 0.026* | |
| N5 | 0.60555 (14) | −0.09248 (19) | 0.14663 (8) | 0.0151 (3) | |
| H5A | 0.6514 (19) | 0.006 (3) | 0.1269 (10) | 0.023* | |
| H5B | 0.612 (2) | −0.084 (3) | 0.1971 (9) | 0.023* | |
| H5C | 0.642 (2) | −0.208 (2) | 0.1385 (10) | 0.023* | |
| O4 | 0.41236 (12) | 0.21890 (16) | 0.17886 (6) | 0.0177 (2) | |
| H4O | 0.4859 (19) | 0.294 (3) | 0.1786 (11) | 0.027* | |
| O2 | 0.12055 (12) | 0.05338 (16) | 0.18490 (6) | 0.0188 (2) | |
| H2O | 0.0491 (19) | 0.137 (3) | 0.1815 (11) | 0.028* | |
| O3 | 0.15853 (12) | 0.32218 (16) | 0.05817 (6) | 0.0206 (2) | |
| H3O | 0.171 (2) | 0.369 (3) | 0.0137 (9) | 0.031* | |
| S1 | 0.77047 (4) | 0.40360 (5) | 0.132375 (19) | 0.01264 (13) | |
| O7 | 0.80382 (13) | 0.58885 (16) | 0.09000 (6) | 0.0268 (3) | |
| O8 | 0.90424 (11) | 0.34825 (16) | 0.19086 (6) | 0.0201 (2) | |
| O5 | 0.72807 (12) | 0.23732 (16) | 0.07600 (6) | 0.0221 (3) | |
| O6 | 0.65015 (12) | 0.45266 (18) | 0.17466 (7) | 0.0294 (3) |
| C5 | 0.0114 (7) | 0.0124 (7) | 0.0148 (7) | −0.0003 (5) | 0.0022 (5) | −0.0010 (5) |
| C6 | 0.0148 (7) | 0.0096 (7) | 0.0200 (7) | −0.0004 (5) | 0.0027 (5) | 0.0025 (5) |
| C2 | 0.0112 (7) | 0.0156 (7) | 0.0142 (6) | 0.0004 (5) | 0.0008 (5) | −0.0008 (5) |
| C1 | 0.0151 (7) | 0.0118 (7) | 0.0146 (6) | −0.0038 (5) | 0.0043 (5) | −0.0007 (5) |
| C3 | 0.0165 (7) | 0.0106 (7) | 0.0137 (6) | 0.0026 (5) | 0.0024 (5) | 0.0004 (5) |
| C4 | 0.0150 (7) | 0.0104 (7) | 0.0131 (6) | −0.0017 (5) | 0.0044 (5) | −0.0001 (5) |
| N1 | 0.0178 (7) | 0.0142 (6) | 0.0205 (7) | −0.0052 (5) | 0.0067 (5) | −0.0017 (5) |
| N5 | 0.0129 (6) | 0.0132 (6) | 0.0191 (6) | 0.0008 (5) | 0.0032 (5) | −0.0012 (5) |
| O4 | 0.0199 (5) | 0.0158 (5) | 0.0179 (5) | −0.0065 (4) | 0.0045 (4) | −0.0047 (4) |
| O2 | 0.0209 (6) | 0.0195 (5) | 0.0172 (5) | 0.0050 (4) | 0.0069 (4) | −0.0003 (4) |
| O3 | 0.0269 (6) | 0.0136 (5) | 0.0223 (5) | 0.0083 (4) | 0.0073 (4) | 0.0046 (4) |
| S1 | 0.0110 (2) | 0.01085 (19) | 0.0156 (2) | −0.00160 (12) | 0.00125 (13) | 0.00023 (12) |
| O7 | 0.0345 (7) | 0.0183 (6) | 0.0244 (6) | −0.0064 (5) | −0.0017 (5) | 0.0082 (4) |
| O8 | 0.0183 (5) | 0.0207 (5) | 0.0193 (5) | 0.0035 (4) | −0.0009 (4) | 0.0023 (4) |
| O5 | 0.0255 (6) | 0.0209 (6) | 0.0205 (5) | −0.0077 (4) | 0.0055 (4) | −0.0057 (4) |
| O6 | 0.0168 (6) | 0.0289 (6) | 0.0455 (7) | −0.0041 (5) | 0.0134 (5) | −0.0149 (5) |
| C5—N5 | 1.4993 (18) | C4—O4 | 1.4312 (17) |
| C5—C6 | 1.5355 (19) | C4—H4 | 1.0000 |
| C5—C4 | 1.5454 (19) | N1—H1A | 0.870 (14) |
| C5—H5 | 1.0000 | N1—H1B | 0.867 (15) |
| C6—C1 | 1.521 (2) | N1—H1C | 0.853 (15) |
| C6—H6A | 0.9900 | N5—H5A | 0.885 (15) |
| C6—H6B | 0.9900 | N5—H5B | 0.864 (14) |
| C2—O2 | 1.4265 (17) | N5—H5C | 0.866 (15) |
| C2—C1 | 1.536 (2) | O4—H4O | 0.845 (15) |
| C2—C3 | 1.5386 (19) | O2—H2O | 0.855 (15) |
| C2—H2 | 1.0000 | O3—H3O | 0.856 (15) |
| C1—N1 | 1.4985 (18) | S1—O5 | 1.4758 (11) |
| C1—H1 | 1.0000 | S1—O8 | 1.4768 (11) |
| C3—O3 | 1.4297 (17) | S1—O6 | 1.4802 (12) |
| C3—C4 | 1.538 (2) | S1—O7 | 1.4982 (11) |
| C3—H3 | 1.0000 | ||
| N5—C5—C6 | 108.67 (11) | C2—C3—H3 | 107.4 |
| N5—C5—C4 | 110.25 (11) | O4—C4—C3 | 111.66 (11) |
| C6—C5—C4 | 110.85 (11) | O4—C4—C5 | 110.99 (11) |
| N5—C5—H5 | 109.0 | C3—C4—C5 | 108.20 (11) |
| C6—C5—H5 | 109.0 | O4—C4—H4 | 108.6 |
| C4—C5—H5 | 109.0 | C3—C4—H4 | 108.6 |
| C1—C6—C5 | 110.43 (11) | C5—C4—H4 | 108.6 |
| C1—C6—H6A | 109.6 | C1—N1—H1A | 113.0 (13) |
| C5—C6—H6A | 109.6 | C1—N1—H1B | 108.2 (12) |
| C1—C6—H6B | 109.6 | H1A—N1—H1B | 112.8 (17) |
| C5—C6—H6B | 109.6 | C1—N1—H1C | 112.2 (13) |
| H6A—C6—H6B | 108.1 | H1A—N1—H1C | 105.8 (18) |
| O2—C2—C1 | 108.74 (11) | H1B—N1—H1C | 104.5 (18) |
| O2—C2—C3 | 114.09 (11) | C5—N5—H5A | 107.5 (12) |
| C1—C2—C3 | 107.97 (11) | C5—N5—H5B | 109.5 (12) |
| O2—C2—H2 | 108.6 | H5A—N5—H5B | 113.7 (16) |
| C1—C2—H2 | 108.6 | C5—N5—H5C | 108.8 (12) |
| C3—C2—H2 | 108.6 | H5A—N5—H5C | 111.5 (17) |
| N1—C1—C6 | 107.99 (11) | H5B—N5—H5C | 105.7 (17) |
| N1—C1—C2 | 110.35 (12) | C4—O4—H4O | 103.2 (12) |
| C6—C1—C2 | 112.20 (11) | C2—O2—H2O | 107.9 (12) |
| N1—C1—H1 | 108.7 | C3—O3—H3O | 106.1 (13) |
| C6—C1—H1 | 108.7 | O5—S1—O8 | 109.81 (7) |
| C2—C1—H1 | 108.7 | O5—S1—O6 | 111.42 (6) |
| O3—C3—C4 | 111.27 (11) | O8—S1—O6 | 108.86 (7) |
| O3—C3—C2 | 108.78 (11) | O5—S1—O7 | 110.50 (6) |
| C4—C3—C2 | 114.41 (11) | O8—S1—O7 | 108.39 (6) |
| O3—C3—H3 | 107.4 | O6—S1—O7 | 107.77 (7) |
| C4—C3—H3 | 107.4 | ||
| N5—C5—C6—C1 | 179.85 (11) | O2—C2—C3—C4 | 65.11 (15) |
| C4—C5—C6—C1 | 58.54 (15) | C1—C2—C3—C4 | −55.89 (14) |
| C5—C6—C1—N1 | 179.52 (11) | O3—C3—C4—O4 | 58.04 (15) |
| C5—C6—C1—C2 | −58.64 (15) | C2—C3—C4—O4 | −65.75 (15) |
| O2—C2—C1—N1 | 51.84 (14) | O3—C3—C4—C5 | −179.54 (11) |
| C3—C2—C1—N1 | 176.11 (10) | C2—C3—C4—C5 | 56.67 (15) |
| O2—C2—C1—C6 | −68.64 (14) | N5—C5—C4—O4 | −53.77 (15) |
| C3—C2—C1—C6 | 55.63 (14) | C6—C5—C4—O4 | 66.61 (14) |
| O2—C2—C3—O3 | −60.00 (15) | N5—C5—C4—C3 | −176.61 (11) |
| C1—C2—C3—O3 | 179.00 (10) | C6—C5—C4—C3 | −56.23 (15) |
| H··· | ||||
| N1—H1 | 0.87 (1) | 2.09 (2) | 2.9292 (17) | 163 (2) |
| N1—H1 | 0.87 (2) | 2.11 (2) | 2.8125 (18) | 138 (2) |
| N1—H1 | 0.85 (2) | 2.04 (2) | 2.882 (2) | 170 (2) |
| N5—H5 | 0.89 (2) | 1.97 (2) | 2.8538 (17) | 173 (2) |
| N5—H5 | 0.86 (1) | 2.02 (2) | 2.8530 (18) | 162 (2) |
| N5—H5 | 0.87 (2) | 2.29 (2) | 3.0852 (18) | 153 (2) |
| N5—H5 | 0.87 (2) | 2.34 (2) | 3.0856 (19) | 144 (2) |
| O4—H4 | 0.85 (2) | 1.86 (2) | 2.7017 (16) | 177 (2) |
| O2—H2 | 0.86 (2) | 1.97 (2) | 2.8161 (15) | 170 (2) |
| O3—H3 | 0.86 (2) | 1.87 (2) | 2.7149 (16) | 167 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.87 (1) | 2.09 (2) | 2.9292 (17) | 163 (2) |
| N1—H1 | 0.87 (2) | 2.11 (2) | 2.8125 (18) | 138 (2) |
| N1—H1 | 0.85 (2) | 2.04 (2) | 2.882 (2) | 170 (2) |
| N5—H5 | 0.89 (2) | 1.97 (2) | 2.8538 (17) | 173 (2) |
| N5—H5 | 0.86 (1) | 2.02 (2) | 2.8530 (18) | 162 (2) |
| N5—H5 | 0.87 (2) | 2.29 (2) | 3.0852 (18) | 153 (2) |
| N5—H5 | 0.87 (2) | 2.34 (2) | 3.0856 (19) | 144 (2) |
| O4—H4 | 0.85 (2) | 1.86 (2) | 2.7017 (16) | 177 (2) |
| O2—H2 | 0.86 (2) | 1.97 (2) | 2.8161 (15) | 170 (2) |
| O3—H3 | 0.86 (2) | 1.87 (2) | 2.7149 (16) | 167 (2) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .