Literature DB >> 22719615

1-{(E)-[3-(1H-Imidazol-1-yl)-1-phenyl-propyl-idene]amino}-3-(2-methyl-phen-yl)urea.

Mohamed I Attia, Mohamed N Aboul-Enein, Nasser R El-Brollosy, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(20)H(21)N(5)O, the conformation about the imine bond [1.289 (3) Å] is E. Overall, the mol-ecule is disk-shaped with the imidazole ring located above the remainder of the mol-ecule and with the dihedral angles of 10.97 (15) and 12.11 (15)°, respectively, between the imidazole ring and the phenyl and methyl-benzene rings; the dihedral angle between the aromatic rings is 8.17 (14)°. Within the urea unit, the N-H atoms are anti to each other and one of the N-H atoms forms an intra-molecular N-H⋯N hydrogen bond. Helical supra-molecular chains along [001] are formed via N-H⋯N(imidazole) hydrogen bonds in the crystal structure. These are connected into a three-dimensional architecture by C-H⋯O(carbon-yl) and C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 22719615      PMCID: PMC3379417          DOI: 10.1107/S1600536812022659

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to epilepsy and epilepsy drugs see: Sander & Shorvon (1987 ▶); Saxena & Saxena (1995 ▶); Edafiogho & Scott (1996 ▶). For the use of aryl semicarbazones as anti-convulsants see: Aboul-Enein et al. (2012 ▶); Dimmock et al. (1993 ▶, 1995 ▶). For a related structure see: Attia et al. (2012 ▶).

Experimental

Crystal data

C20H21N5O M = 347.42 Orthorhombic, a = 20.5220 (17) Å b = 14.1916 (11) Å c = 6.0060 (4) Å V = 1749.2 (2) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.40 × 0.08 × 0.04 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.805, T max = 1.000 8422 measured reflections 2211 independent reflections 1809 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.097 S = 1.02 2211 reflections 244 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812022659/mw2069sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812022659/mw2069Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812022659/mw2069Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H21N5OF(000) = 736
Mr = 347.42Dx = 1.319 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 2304 reflections
a = 20.5220 (17) Åθ = 2.5–27.5°
b = 14.1916 (11) ŵ = 0.09 mm1
c = 6.0060 (4) ÅT = 100 K
V = 1749.2 (2) Å3Prism, colourless
Z = 40.40 × 0.08 × 0.04 mm
Agilent SuperNova Dual diffractometer with an Atlas detector2211 independent reflections
Radiation source: SuperNova (Mo) X-ray Source1809 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.057
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.5°
ω scanh = −26→25
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −18→14
Tmin = 0.805, Tmax = 1.000l = −7→7
8422 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0372P)2 + 0.4249P] where P = (Fo2 + 2Fc2)/3
2211 reflections(Δ/σ)max < 0.001
244 parametersΔρmax = 0.19 e Å3
3 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.16812 (10)0.91634 (13)1.0006 (3)0.0235 (5)
N10.19630 (12)0.75898 (15)1.0029 (4)0.0190 (5)
H1n0.1888 (15)0.7078 (14)0.925 (5)0.029 (9)*
N20.12686 (12)0.81951 (15)0.7377 (4)0.0198 (5)
H2n0.1117 (13)0.8684 (14)0.662 (4)0.016 (8)*
N30.12298 (12)0.72925 (16)0.6568 (4)0.0180 (5)
N4−0.04027 (11)0.86786 (16)0.2322 (4)0.0196 (5)
N5−0.08081 (12)0.99922 (16)0.0881 (4)0.0213 (5)
C10.23540 (14)0.7509 (2)1.1950 (4)0.0179 (6)
C20.24925 (15)0.8274 (2)1.3333 (5)0.0214 (6)
H20.23350.88841.29630.026*
C30.28578 (14)0.8145 (2)1.5240 (5)0.0241 (7)
H30.29450.86661.61880.029*
C40.30981 (16)0.7261 (2)1.5779 (5)0.0241 (7)
H40.33500.71741.70900.029*
C50.29672 (14)0.65011 (19)1.4380 (5)0.0218 (6)
H50.31320.58961.47530.026*
C60.26012 (13)0.66097 (19)1.2451 (5)0.0185 (6)
C70.24667 (14)0.57690 (18)1.0977 (5)0.0209 (6)
H7A0.26130.59050.94580.031*
H7B0.19980.56381.09670.031*
H7C0.27020.52191.15500.031*
C80.16516 (13)0.83647 (19)0.9221 (4)0.0186 (6)
C90.09415 (13)0.71323 (19)0.4699 (5)0.0177 (6)
C100.09067 (13)0.61251 (19)0.4007 (5)0.0171 (6)
C110.06162 (14)0.58577 (19)0.1998 (5)0.0196 (6)
H110.04470.63280.10330.023*
C120.05714 (14)0.4915 (2)0.1391 (5)0.0230 (7)
H120.03680.47460.00260.028*
C130.08204 (15)0.4225 (2)0.2759 (5)0.0242 (7)
H130.07870.35810.23440.029*
C140.11191 (14)0.4473 (2)0.4744 (5)0.0251 (7)
H140.12930.39980.56870.030*
C150.11650 (15)0.54123 (19)0.5355 (5)0.0226 (6)
H150.13750.55750.67110.027*
C160.06317 (14)0.78834 (19)0.3273 (4)0.0181 (6)
H16A0.06630.76980.16880.022*
H16B0.08720.84820.34650.022*
C17−0.00841 (14)0.80344 (19)0.3886 (5)0.0217 (6)
H17A−0.03140.74210.38740.026*
H17B−0.01130.82970.54100.026*
C18−0.06042 (14)0.8465 (2)0.0194 (5)0.0220 (6)
H18−0.05750.7871−0.05290.026*
C19−0.08538 (14)0.92777 (19)−0.0665 (5)0.0220 (6)
H19−0.10330.9342−0.21160.026*
C20−0.05398 (14)0.96020 (19)0.2651 (5)0.0206 (6)
H20−0.04530.99300.39980.025*
U11U22U33U12U13U23
O10.0321 (11)0.0115 (9)0.0270 (11)0.0001 (9)−0.0050 (10)−0.0016 (8)
N10.0223 (13)0.0119 (11)0.0227 (12)0.0029 (10)−0.0052 (11)−0.0031 (10)
N20.0275 (13)0.0124 (11)0.0196 (12)0.0038 (10)−0.0040 (11)−0.0005 (10)
N30.0197 (12)0.0143 (12)0.0200 (12)−0.0002 (10)−0.0003 (10)−0.0008 (8)
N40.0201 (12)0.0165 (12)0.0222 (12)0.0026 (10)−0.0004 (11)0.0012 (10)
N50.0230 (13)0.0174 (12)0.0235 (12)0.0022 (11)0.0003 (12)−0.0003 (10)
C10.0150 (13)0.0194 (15)0.0192 (14)0.0002 (11)0.0023 (12)0.0009 (11)
C20.0225 (15)0.0148 (13)0.0268 (15)−0.0033 (12)0.0011 (12)0.0001 (12)
C30.0253 (15)0.0199 (15)0.0272 (16)−0.0016 (13)−0.0037 (14)−0.0054 (12)
C40.0267 (16)0.0246 (15)0.0210 (14)0.0014 (13)−0.0065 (13)0.0010 (12)
C50.0213 (14)0.0156 (14)0.0284 (16)0.0030 (12)0.0008 (14)0.0039 (12)
C60.0180 (14)0.0150 (14)0.0226 (14)−0.0004 (11)0.0032 (14)−0.0004 (12)
C70.0199 (15)0.0162 (14)0.0265 (14)0.0023 (12)−0.0038 (13)−0.0009 (12)
C80.0184 (14)0.0172 (13)0.0202 (14)−0.0022 (12)0.0040 (13)0.0019 (11)
C90.0164 (14)0.0160 (14)0.0206 (14)−0.0003 (11)0.0006 (12)0.0015 (11)
C100.0145 (13)0.0170 (13)0.0199 (13)0.0003 (11)0.0017 (12)0.0007 (11)
C110.0198 (14)0.0169 (14)0.0221 (14)0.0016 (12)0.0005 (13)0.0017 (11)
C120.0189 (15)0.0250 (16)0.0252 (16)−0.0017 (13)0.0026 (13)−0.0048 (12)
C130.0244 (16)0.0173 (14)0.0309 (16)0.0004 (13)0.0013 (15)−0.0048 (12)
C140.0265 (16)0.0205 (15)0.0283 (16)0.0046 (13)−0.0004 (14)0.0013 (12)
C150.0248 (16)0.0195 (14)0.0235 (15)−0.0007 (13)−0.0029 (13)−0.0021 (12)
C160.0223 (15)0.0138 (13)0.0181 (13)0.0023 (12)−0.0034 (12)0.0020 (10)
C170.0231 (16)0.0185 (14)0.0234 (15)0.0061 (12)0.0013 (13)0.0060 (12)
C180.0262 (15)0.0197 (14)0.0200 (14)0.0020 (13)−0.0024 (14)−0.0048 (11)
C190.0216 (15)0.0224 (15)0.0220 (15)0.0001 (12)−0.0021 (13)0.0012 (12)
C200.0216 (14)0.0178 (14)0.0223 (14)0.0022 (12)0.0007 (13)−0.0032 (11)
O1—C81.229 (3)C7—H7B0.9800
N1—C81.361 (3)C7—H7C0.9800
N1—C11.410 (4)C9—C101.490 (4)
N1—H1n0.879 (10)C9—C161.508 (4)
N2—N31.373 (3)C10—C111.398 (4)
N2—C81.379 (4)C10—C151.400 (4)
N2—H2n0.885 (10)C11—C121.390 (4)
N3—C91.289 (3)C11—H110.9500
N4—C201.355 (3)C12—C131.377 (4)
N4—C181.377 (4)C12—H120.9500
N4—C171.465 (3)C13—C141.386 (4)
N5—C201.319 (4)C13—H130.9500
N5—C191.378 (4)C14—C151.386 (4)
C1—C21.396 (4)C14—H140.9500
C1—C61.406 (4)C15—H150.9500
C2—C31.381 (4)C16—C171.530 (4)
C2—H20.9500C16—H16A0.9900
C3—C41.387 (4)C16—H16B0.9900
C3—H30.9500C17—H17A0.9900
C4—C51.393 (4)C17—H17B0.9900
C4—H40.9500C18—C191.363 (4)
C5—C61.389 (4)C18—H180.9500
C5—H50.9500C19—H190.9500
C6—C71.511 (4)C20—H200.9500
C7—H7A0.9800
C8—N1—C1128.6 (2)C10—C9—C16120.0 (2)
C8—N1—H1n113 (2)C11—C10—C15117.7 (2)
C1—N1—H1n118 (2)C11—C10—C9121.4 (2)
N3—N2—C8118.7 (2)C15—C10—C9120.9 (2)
N3—N2—H2n121.9 (19)C12—C11—C10121.1 (3)
C8—N2—H2n118.4 (19)C12—C11—H11119.5
C9—N3—N2120.0 (2)C10—C11—H11119.5
C20—N4—C18106.6 (2)C13—C12—C11120.2 (3)
C20—N4—C17127.1 (2)C13—C12—H12119.9
C18—N4—C17126.3 (2)C11—C12—H12119.9
C20—N5—C19105.2 (2)C12—C13—C14119.8 (3)
C2—C1—C6120.3 (3)C12—C13—H13120.1
C2—C1—N1122.7 (3)C14—C13—H13120.1
C6—C1—N1117.0 (2)C13—C14—C15120.1 (3)
C3—C2—C1120.1 (3)C13—C14—H14119.9
C3—C2—H2120.0C15—C14—H14119.9
C1—C2—H2120.0C14—C15—C10121.1 (3)
C2—C3—C4120.4 (3)C14—C15—H15119.5
C2—C3—H3119.8C10—C15—H15119.5
C4—C3—H3119.8C9—C16—C17111.6 (2)
C3—C4—C5119.4 (3)C9—C16—H16A109.3
C3—C4—H4120.3C17—C16—H16A109.3
C5—C4—H4120.3C9—C16—H16B109.3
C6—C5—C4121.4 (3)C17—C16—H16B109.3
C6—C5—H5119.3H16A—C16—H16B108.0
C4—C5—H5119.3N4—C17—C16111.2 (2)
C5—C6—C1118.3 (3)N4—C17—H17A109.4
C5—C6—C7120.0 (2)C16—C17—H17A109.4
C1—C6—C7121.7 (3)N4—C17—H17B109.4
C6—C7—H7A109.5C16—C17—H17B109.4
C6—C7—H7B109.5H17A—C17—H17B108.0
H7A—C7—H7B109.5C19—C18—N4106.1 (3)
C6—C7—H7C109.5C19—C18—H18126.9
H7A—C7—H7C109.5N4—C18—H18126.9
H7B—C7—H7C109.5C18—C19—N5110.0 (3)
O1—C8—N1125.8 (3)C18—C19—H19125.0
O1—C8—N2119.8 (2)N5—C19—H19125.0
N1—C8—N2114.4 (2)N5—C20—N4112.0 (3)
N3—C9—C10115.7 (2)N5—C20—H20124.0
N3—C9—C16124.3 (2)N4—C20—H20124.0
C8—N2—N3—C9−171.6 (2)N3—C9—C10—C151.1 (4)
C8—N1—C1—C2−1.6 (5)C16—C9—C10—C15−177.1 (3)
C8—N1—C1—C6177.8 (3)C15—C10—C11—C121.6 (4)
C6—C1—C2—C3−1.9 (4)C9—C10—C11—C12−178.4 (3)
N1—C1—C2—C3177.5 (3)C10—C11—C12—C13−0.6 (4)
C1—C2—C3—C41.0 (5)C11—C12—C13—C14−0.3 (4)
C2—C3—C4—C5−0.1 (5)C12—C13—C14—C150.3 (4)
C3—C4—C5—C60.1 (5)C13—C14—C15—C100.7 (4)
C4—C5—C6—C1−1.0 (4)C11—C10—C15—C14−1.6 (4)
C4—C5—C6—C7−179.8 (3)C9—C10—C15—C14178.4 (3)
C2—C1—C6—C51.9 (4)N3—C9—C16—C17−90.0 (3)
N1—C1—C6—C5−177.6 (3)C10—C9—C16—C1788.0 (3)
C2—C1—C6—C7−179.3 (3)C20—N4—C17—C16−101.8 (3)
N1—C1—C6—C71.2 (4)C18—N4—C17—C1676.1 (3)
C1—N1—C8—O13.3 (5)C9—C16—C17—N4−173.0 (2)
C1—N1—C8—N2−175.7 (3)C20—N4—C18—C190.1 (3)
N3—N2—C8—O1−178.3 (2)C17—N4—C18—C19−178.1 (3)
N3—N2—C8—N10.8 (4)N4—C18—C19—N50.3 (3)
N2—N3—C9—C10−178.0 (2)C20—N5—C19—C18−0.7 (3)
N2—N3—C9—C160.0 (4)C19—N5—C20—N40.8 (3)
N3—C9—C10—C11−179.0 (3)C18—N4—C20—N5−0.6 (3)
C16—C9—C10—C112.9 (4)C17—N4—C20—N5177.7 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1n···N30.88 (1)2.12 (3)2.601 (3)114 (2)
N2—H2n···N5i0.89 (1)2.03 (1)2.884 (3)161 (3)
C5—H5···O1ii0.952.493.416 (3)164
C7—H7B···Cg1iii0.982.823.686 (3)148
C12—H12···Cg1iv0.952.723.464 (3)135
C20—H20···Cg2i0.952.853.604 (3)137
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C10–C15 and N4,N5,C18–C20 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1n⋯N30.88 (1)2.12 (3)2.601 (3)114 (2)
N2—H2n⋯N5i0.89 (1)2.03 (1)2.884 (3)161 (3)
C5—H5⋯O1ii0.952.493.416 (3)164
C7—H7BCg1iii0.982.823.686 (3)148
C12—H12⋯Cg1iv0.952.723.464 (3)135
C20—H20⋯Cg2i0.952.853.604 (3)137

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Developments in anticonvulsants.

Authors:  A K Saxena; M Saxena
Journal:  Prog Drug Res       Date:  1995

Review 3.  Incidence and prevalence studies in epilepsy and their methodological problems: a review.

Authors:  J W Sander; S D Shorvon
Journal:  J Neurol Neurosurg Psychiatry       Date:  1987-07       Impact factor: 10.154

4.  Design and synthesis of novel stiripentol analogues as potential anticonvulsants.

Authors:  Mohamed N Aboul-Enein; Aida A El-Azzouny; Mohamed I Attia; Yousreya A Maklad; Kamilia M Amin; Mohamed Abdel-Rehim; Mohammed F El-Behairy
Journal:  Eur J Med Chem       Date:  2011-11-11       Impact factor: 6.514

5.  Anticonvulsant activities of some arylsemicarbazones displaying potent oral activity in the maximal electroshock screen in rats accompanied by high protection indices.

Authors:  J R Dimmock; K K Sidhu; R S Thayer; P Mack; M J Duffy; R S Reid; J W Quail; U Pugazhenthi; A Ong; J A Bikker
Journal:  J Med Chem       Date:  1993-08-06       Impact factor: 7.446

6.  1-{(E)-[3-(1H-Imidazol-1-yl)-1-(4-meth-oxy-phen-yl)propyl-idene]amino}-3-(2-methyl-phen-yl)urea.

Authors:  Mohamed I Attia; Mohamed N Aboul-Enein; Nasser R El-Brollosy; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19
  6 in total
  1 in total

1.  Anticonvulsant potential of certain new (2E)-2-[1-Aryl-3-(1H-imidazol-1-yl)propylidene]-N-(aryl/H)hydrazinecarboxamides.

Authors:  Mohamed I Attia; Mohamed N Aboul-Enein; Aida A El-Azzouny; Yousreya A Maklad; Hazem A Ghabbour
Journal:  ScientificWorldJournal       Date:  2014-01-12
  1 in total

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