| Literature DB >> 22719615 |
Mohamed I Attia, Mohamed N Aboul-Enein, Nasser R El-Brollosy, Seik Weng Ng, Edward R T Tiekink.
Abstract
In the title compound, C(20)H(21)N(5)O, the conformation about the imine bond [1.289 (3) Å] is E. Overall, the mol-ecule is disk-shaped with the imidazole ring located above the remainder of the mol-ecule and with the dihedral angles of 10.97 (15) and 12.11 (15)°, respectively, between the imidazole ring and the phenyl and methyl-benzene rings; the dihedral angle between the aromatic rings is 8.17 (14)°. Within the urea unit, the N-H atoms are anti to each other and one of the N-H atoms forms an intra-molecular N-H⋯N hydrogen bond. Helical supra-molecular chains along [001] are formed via N-H⋯N(imidazole) hydrogen bonds in the crystal structure. These are connected into a three-dimensional architecture by C-H⋯O(carbon-yl) and C-H⋯π inter-actions.Entities:
Year: 2012 PMID: 22719615 PMCID: PMC3379417 DOI: 10.1107/S1600536812022659
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H21N5O | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2n | Cell parameters from 2304 reflections |
| θ = 2.5–27.5° | |
| µ = 0.09 mm−1 | |
| Prism, colourless | |
| 0.40 × 0.08 × 0.04 mm |
| Agilent SuperNova Dual diffractometer with an Atlas detector | 2211 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 1809 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 27.6°, θmin = 2.5° |
| ω scan | |
| Absorption correction: multi-scan ( | |
| 8422 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2211 reflections | (Δ/σ)max < 0.001 |
| 244 parameters | Δρmax = 0.19 e Å−3 |
| 3 restraints | Δρmin = −0.25 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.16812 (10) | 0.91634 (13) | 1.0006 (3) | 0.0235 (5) | |
| N1 | 0.19630 (12) | 0.75898 (15) | 1.0029 (4) | 0.0190 (5) | |
| H1n | 0.1888 (15) | 0.7078 (14) | 0.925 (5) | 0.029 (9)* | |
| N2 | 0.12686 (12) | 0.81951 (15) | 0.7377 (4) | 0.0198 (5) | |
| H2n | 0.1117 (13) | 0.8684 (14) | 0.662 (4) | 0.016 (8)* | |
| N3 | 0.12298 (12) | 0.72925 (16) | 0.6568 (4) | 0.0180 (5) | |
| N4 | −0.04027 (11) | 0.86786 (16) | 0.2322 (4) | 0.0196 (5) | |
| N5 | −0.08081 (12) | 0.99922 (16) | 0.0881 (4) | 0.0213 (5) | |
| C1 | 0.23540 (14) | 0.7509 (2) | 1.1950 (4) | 0.0179 (6) | |
| C2 | 0.24925 (15) | 0.8274 (2) | 1.3333 (5) | 0.0214 (6) | |
| H2 | 0.2335 | 0.8884 | 1.2963 | 0.026* | |
| C3 | 0.28578 (14) | 0.8145 (2) | 1.5240 (5) | 0.0241 (7) | |
| H3 | 0.2945 | 0.8666 | 1.6188 | 0.029* | |
| C4 | 0.30981 (16) | 0.7261 (2) | 1.5779 (5) | 0.0241 (7) | |
| H4 | 0.3350 | 0.7174 | 1.7090 | 0.029* | |
| C5 | 0.29672 (14) | 0.65011 (19) | 1.4380 (5) | 0.0218 (6) | |
| H5 | 0.3132 | 0.5896 | 1.4753 | 0.026* | |
| C6 | 0.26012 (13) | 0.66097 (19) | 1.2451 (5) | 0.0185 (6) | |
| C7 | 0.24667 (14) | 0.57690 (18) | 1.0977 (5) | 0.0209 (6) | |
| H7A | 0.2613 | 0.5905 | 0.9458 | 0.031* | |
| H7B | 0.1998 | 0.5638 | 1.0967 | 0.031* | |
| H7C | 0.2702 | 0.5219 | 1.1550 | 0.031* | |
| C8 | 0.16516 (13) | 0.83647 (19) | 0.9221 (4) | 0.0186 (6) | |
| C9 | 0.09415 (13) | 0.71323 (19) | 0.4699 (5) | 0.0177 (6) | |
| C10 | 0.09067 (13) | 0.61251 (19) | 0.4007 (5) | 0.0171 (6) | |
| C11 | 0.06162 (14) | 0.58577 (19) | 0.1998 (5) | 0.0196 (6) | |
| H11 | 0.0447 | 0.6328 | 0.1033 | 0.023* | |
| C12 | 0.05714 (14) | 0.4915 (2) | 0.1391 (5) | 0.0230 (7) | |
| H12 | 0.0368 | 0.4746 | 0.0026 | 0.028* | |
| C13 | 0.08204 (15) | 0.4225 (2) | 0.2759 (5) | 0.0242 (7) | |
| H13 | 0.0787 | 0.3581 | 0.2344 | 0.029* | |
| C14 | 0.11191 (14) | 0.4473 (2) | 0.4744 (5) | 0.0251 (7) | |
| H14 | 0.1293 | 0.3998 | 0.5687 | 0.030* | |
| C15 | 0.11650 (15) | 0.54123 (19) | 0.5355 (5) | 0.0226 (6) | |
| H15 | 0.1375 | 0.5575 | 0.6711 | 0.027* | |
| C16 | 0.06317 (14) | 0.78834 (19) | 0.3273 (4) | 0.0181 (6) | |
| H16A | 0.0663 | 0.7698 | 0.1688 | 0.022* | |
| H16B | 0.0872 | 0.8482 | 0.3465 | 0.022* | |
| C17 | −0.00841 (14) | 0.80344 (19) | 0.3886 (5) | 0.0217 (6) | |
| H17A | −0.0314 | 0.7421 | 0.3874 | 0.026* | |
| H17B | −0.0113 | 0.8297 | 0.5410 | 0.026* | |
| C18 | −0.06042 (14) | 0.8465 (2) | 0.0194 (5) | 0.0220 (6) | |
| H18 | −0.0575 | 0.7871 | −0.0529 | 0.026* | |
| C19 | −0.08538 (14) | 0.92777 (19) | −0.0665 (5) | 0.0220 (6) | |
| H19 | −0.1033 | 0.9342 | −0.2116 | 0.026* | |
| C20 | −0.05398 (14) | 0.96020 (19) | 0.2651 (5) | 0.0206 (6) | |
| H20 | −0.0453 | 0.9930 | 0.3998 | 0.025* |
| O1 | 0.0321 (11) | 0.0115 (9) | 0.0270 (11) | 0.0001 (9) | −0.0050 (10) | −0.0016 (8) |
| N1 | 0.0223 (13) | 0.0119 (11) | 0.0227 (12) | 0.0029 (10) | −0.0052 (11) | −0.0031 (10) |
| N2 | 0.0275 (13) | 0.0124 (11) | 0.0196 (12) | 0.0038 (10) | −0.0040 (11) | −0.0005 (10) |
| N3 | 0.0197 (12) | 0.0143 (12) | 0.0200 (12) | −0.0002 (10) | −0.0003 (10) | −0.0008 (8) |
| N4 | 0.0201 (12) | 0.0165 (12) | 0.0222 (12) | 0.0026 (10) | −0.0004 (11) | 0.0012 (10) |
| N5 | 0.0230 (13) | 0.0174 (12) | 0.0235 (12) | 0.0022 (11) | 0.0003 (12) | −0.0003 (10) |
| C1 | 0.0150 (13) | 0.0194 (15) | 0.0192 (14) | 0.0002 (11) | 0.0023 (12) | 0.0009 (11) |
| C2 | 0.0225 (15) | 0.0148 (13) | 0.0268 (15) | −0.0033 (12) | 0.0011 (12) | 0.0001 (12) |
| C3 | 0.0253 (15) | 0.0199 (15) | 0.0272 (16) | −0.0016 (13) | −0.0037 (14) | −0.0054 (12) |
| C4 | 0.0267 (16) | 0.0246 (15) | 0.0210 (14) | 0.0014 (13) | −0.0065 (13) | 0.0010 (12) |
| C5 | 0.0213 (14) | 0.0156 (14) | 0.0284 (16) | 0.0030 (12) | 0.0008 (14) | 0.0039 (12) |
| C6 | 0.0180 (14) | 0.0150 (14) | 0.0226 (14) | −0.0004 (11) | 0.0032 (14) | −0.0004 (12) |
| C7 | 0.0199 (15) | 0.0162 (14) | 0.0265 (14) | 0.0023 (12) | −0.0038 (13) | −0.0009 (12) |
| C8 | 0.0184 (14) | 0.0172 (13) | 0.0202 (14) | −0.0022 (12) | 0.0040 (13) | 0.0019 (11) |
| C9 | 0.0164 (14) | 0.0160 (14) | 0.0206 (14) | −0.0003 (11) | 0.0006 (12) | 0.0015 (11) |
| C10 | 0.0145 (13) | 0.0170 (13) | 0.0199 (13) | 0.0003 (11) | 0.0017 (12) | 0.0007 (11) |
| C11 | 0.0198 (14) | 0.0169 (14) | 0.0221 (14) | 0.0016 (12) | 0.0005 (13) | 0.0017 (11) |
| C12 | 0.0189 (15) | 0.0250 (16) | 0.0252 (16) | −0.0017 (13) | 0.0026 (13) | −0.0048 (12) |
| C13 | 0.0244 (16) | 0.0173 (14) | 0.0309 (16) | 0.0004 (13) | 0.0013 (15) | −0.0048 (12) |
| C14 | 0.0265 (16) | 0.0205 (15) | 0.0283 (16) | 0.0046 (13) | −0.0004 (14) | 0.0013 (12) |
| C15 | 0.0248 (16) | 0.0195 (14) | 0.0235 (15) | −0.0007 (13) | −0.0029 (13) | −0.0021 (12) |
| C16 | 0.0223 (15) | 0.0138 (13) | 0.0181 (13) | 0.0023 (12) | −0.0034 (12) | 0.0020 (10) |
| C17 | 0.0231 (16) | 0.0185 (14) | 0.0234 (15) | 0.0061 (12) | 0.0013 (13) | 0.0060 (12) |
| C18 | 0.0262 (15) | 0.0197 (14) | 0.0200 (14) | 0.0020 (13) | −0.0024 (14) | −0.0048 (11) |
| C19 | 0.0216 (15) | 0.0224 (15) | 0.0220 (15) | 0.0001 (12) | −0.0021 (13) | 0.0012 (12) |
| C20 | 0.0216 (14) | 0.0178 (14) | 0.0223 (14) | 0.0022 (12) | 0.0007 (13) | −0.0032 (11) |
| O1—C8 | 1.229 (3) | C7—H7B | 0.9800 |
| N1—C8 | 1.361 (3) | C7—H7C | 0.9800 |
| N1—C1 | 1.410 (4) | C9—C10 | 1.490 (4) |
| N1—H1n | 0.879 (10) | C9—C16 | 1.508 (4) |
| N2—N3 | 1.373 (3) | C10—C11 | 1.398 (4) |
| N2—C8 | 1.379 (4) | C10—C15 | 1.400 (4) |
| N2—H2n | 0.885 (10) | C11—C12 | 1.390 (4) |
| N3—C9 | 1.289 (3) | C11—H11 | 0.9500 |
| N4—C20 | 1.355 (3) | C12—C13 | 1.377 (4) |
| N4—C18 | 1.377 (4) | C12—H12 | 0.9500 |
| N4—C17 | 1.465 (3) | C13—C14 | 1.386 (4) |
| N5—C20 | 1.319 (4) | C13—H13 | 0.9500 |
| N5—C19 | 1.378 (4) | C14—C15 | 1.386 (4) |
| C1—C2 | 1.396 (4) | C14—H14 | 0.9500 |
| C1—C6 | 1.406 (4) | C15—H15 | 0.9500 |
| C2—C3 | 1.381 (4) | C16—C17 | 1.530 (4) |
| C2—H2 | 0.9500 | C16—H16A | 0.9900 |
| C3—C4 | 1.387 (4) | C16—H16B | 0.9900 |
| C3—H3 | 0.9500 | C17—H17A | 0.9900 |
| C4—C5 | 1.393 (4) | C17—H17B | 0.9900 |
| C4—H4 | 0.9500 | C18—C19 | 1.363 (4) |
| C5—C6 | 1.389 (4) | C18—H18 | 0.9500 |
| C5—H5 | 0.9500 | C19—H19 | 0.9500 |
| C6—C7 | 1.511 (4) | C20—H20 | 0.9500 |
| C7—H7A | 0.9800 | ||
| C8—N1—C1 | 128.6 (2) | C10—C9—C16 | 120.0 (2) |
| C8—N1—H1n | 113 (2) | C11—C10—C15 | 117.7 (2) |
| C1—N1—H1n | 118 (2) | C11—C10—C9 | 121.4 (2) |
| N3—N2—C8 | 118.7 (2) | C15—C10—C9 | 120.9 (2) |
| N3—N2—H2n | 121.9 (19) | C12—C11—C10 | 121.1 (3) |
| C8—N2—H2n | 118.4 (19) | C12—C11—H11 | 119.5 |
| C9—N3—N2 | 120.0 (2) | C10—C11—H11 | 119.5 |
| C20—N4—C18 | 106.6 (2) | C13—C12—C11 | 120.2 (3) |
| C20—N4—C17 | 127.1 (2) | C13—C12—H12 | 119.9 |
| C18—N4—C17 | 126.3 (2) | C11—C12—H12 | 119.9 |
| C20—N5—C19 | 105.2 (2) | C12—C13—C14 | 119.8 (3) |
| C2—C1—C6 | 120.3 (3) | C12—C13—H13 | 120.1 |
| C2—C1—N1 | 122.7 (3) | C14—C13—H13 | 120.1 |
| C6—C1—N1 | 117.0 (2) | C13—C14—C15 | 120.1 (3) |
| C3—C2—C1 | 120.1 (3) | C13—C14—H14 | 119.9 |
| C3—C2—H2 | 120.0 | C15—C14—H14 | 119.9 |
| C1—C2—H2 | 120.0 | C14—C15—C10 | 121.1 (3) |
| C2—C3—C4 | 120.4 (3) | C14—C15—H15 | 119.5 |
| C2—C3—H3 | 119.8 | C10—C15—H15 | 119.5 |
| C4—C3—H3 | 119.8 | C9—C16—C17 | 111.6 (2) |
| C3—C4—C5 | 119.4 (3) | C9—C16—H16A | 109.3 |
| C3—C4—H4 | 120.3 | C17—C16—H16A | 109.3 |
| C5—C4—H4 | 120.3 | C9—C16—H16B | 109.3 |
| C6—C5—C4 | 121.4 (3) | C17—C16—H16B | 109.3 |
| C6—C5—H5 | 119.3 | H16A—C16—H16B | 108.0 |
| C4—C5—H5 | 119.3 | N4—C17—C16 | 111.2 (2) |
| C5—C6—C1 | 118.3 (3) | N4—C17—H17A | 109.4 |
| C5—C6—C7 | 120.0 (2) | C16—C17—H17A | 109.4 |
| C1—C6—C7 | 121.7 (3) | N4—C17—H17B | 109.4 |
| C6—C7—H7A | 109.5 | C16—C17—H17B | 109.4 |
| C6—C7—H7B | 109.5 | H17A—C17—H17B | 108.0 |
| H7A—C7—H7B | 109.5 | C19—C18—N4 | 106.1 (3) |
| C6—C7—H7C | 109.5 | C19—C18—H18 | 126.9 |
| H7A—C7—H7C | 109.5 | N4—C18—H18 | 126.9 |
| H7B—C7—H7C | 109.5 | C18—C19—N5 | 110.0 (3) |
| O1—C8—N1 | 125.8 (3) | C18—C19—H19 | 125.0 |
| O1—C8—N2 | 119.8 (2) | N5—C19—H19 | 125.0 |
| N1—C8—N2 | 114.4 (2) | N5—C20—N4 | 112.0 (3) |
| N3—C9—C10 | 115.7 (2) | N5—C20—H20 | 124.0 |
| N3—C9—C16 | 124.3 (2) | N4—C20—H20 | 124.0 |
| C8—N2—N3—C9 | −171.6 (2) | N3—C9—C10—C15 | 1.1 (4) |
| C8—N1—C1—C2 | −1.6 (5) | C16—C9—C10—C15 | −177.1 (3) |
| C8—N1—C1—C6 | 177.8 (3) | C15—C10—C11—C12 | 1.6 (4) |
| C6—C1—C2—C3 | −1.9 (4) | C9—C10—C11—C12 | −178.4 (3) |
| N1—C1—C2—C3 | 177.5 (3) | C10—C11—C12—C13 | −0.6 (4) |
| C1—C2—C3—C4 | 1.0 (5) | C11—C12—C13—C14 | −0.3 (4) |
| C2—C3—C4—C5 | −0.1 (5) | C12—C13—C14—C15 | 0.3 (4) |
| C3—C4—C5—C6 | 0.1 (5) | C13—C14—C15—C10 | 0.7 (4) |
| C4—C5—C6—C1 | −1.0 (4) | C11—C10—C15—C14 | −1.6 (4) |
| C4—C5—C6—C7 | −179.8 (3) | C9—C10—C15—C14 | 178.4 (3) |
| C2—C1—C6—C5 | 1.9 (4) | N3—C9—C16—C17 | −90.0 (3) |
| N1—C1—C6—C5 | −177.6 (3) | C10—C9—C16—C17 | 88.0 (3) |
| C2—C1—C6—C7 | −179.3 (3) | C20—N4—C17—C16 | −101.8 (3) |
| N1—C1—C6—C7 | 1.2 (4) | C18—N4—C17—C16 | 76.1 (3) |
| C1—N1—C8—O1 | 3.3 (5) | C9—C16—C17—N4 | −173.0 (2) |
| C1—N1—C8—N2 | −175.7 (3) | C20—N4—C18—C19 | 0.1 (3) |
| N3—N2—C8—O1 | −178.3 (2) | C17—N4—C18—C19 | −178.1 (3) |
| N3—N2—C8—N1 | 0.8 (4) | N4—C18—C19—N5 | 0.3 (3) |
| N2—N3—C9—C10 | −178.0 (2) | C20—N5—C19—C18 | −0.7 (3) |
| N2—N3—C9—C16 | 0.0 (4) | C19—N5—C20—N4 | 0.8 (3) |
| N3—C9—C10—C11 | −179.0 (3) | C18—N4—C20—N5 | −0.6 (3) |
| C16—C9—C10—C11 | 2.9 (4) | C17—N4—C20—N5 | 177.7 (3) |
| H··· | ||||
| N1—H1 | 0.88 (1) | 2.12 (3) | 2.601 (3) | 114 (2) |
| N2—H2 | 0.89 (1) | 2.03 (1) | 2.884 (3) | 161 (3) |
| C5—H5···O1ii | 0.95 | 2.49 | 3.416 (3) | 164 |
| C7—H7 | 0.98 | 2.82 | 3.686 (3) | 148 |
| C12—H12··· | 0.95 | 2.72 | 3.464 (3) | 135 |
| C20—H20··· | 0.95 | 2.85 | 3.604 (3) | 137 |
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of the C10–C15 and N4,N5,C18–C20 rings, respectively.
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.88 (1) | 2.12 (3) | 2.601 (3) | 114 (2) |
| N2—H2 | 0.89 (1) | 2.03 (1) | 2.884 (3) | 161 (3) |
| C5—H5⋯O1ii | 0.95 | 2.49 | 3.416 (3) | 164 |
| C7—H7 | 0.98 | 2.82 | 3.686 (3) | 148 |
| C12—H12⋯ | 0.95 | 2.72 | 3.464 (3) | 135 |
| C20—H20⋯ | 0.95 | 2.85 | 3.604 (3) | 137 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .