| Literature DB >> 22719573 |
Mohamed I Attia, Mohamed N Aboul-Enein, Nasser R El-Brollosy, Seik Weng Ng, Edward R T Tiekink.
Abstract
In the title compound, C(21)H(23)N(5)O(2), the conformation about the imine bond [1.287 (3) Å] is E. Overall, the mol-ecule has a disk shape, the dihedral angles between the imidazole ring and the meth-oxy-phenyl and methyl-phenyl rings being 49.42 (13) and 42.62 (13)°, respectively; the dihedral angle between the benzene rings is 20.11 (11)°. In the urea moiety, the N-H atoms are anti to each other and one of these forms an intra-molecular N-H⋯N hydrogen bond. In the crystal, centrosymmetric dimers are formed via N-H⋯N(imidazole) hydrogen bonds, which are connected into a three-dimensional architecture by C-H⋯O(carbon-yl) and (methyl-ene)C-H⋯π inter-actions. The crystal studied was a non-merohedral twin with a minor component of 48.3 (1)%.Entities:
Year: 2012 PMID: 22719573 PMCID: PMC3379375 DOI: 10.1107/S1600536812021903
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H23N5O2 | |
| Monoclinic, | Melting point: 364 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 1904 reflections | |
| θ = 2.4–27.5° | |
| µ = 0.09 mm−1 | |
| β = 105.318 (15)° | |
| Prism, colourless | |
| 0.35 × 0.15 × 0.03 mm |
| Agilent SuperNova Dual diffractometer with an Atlas detector | 7494 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 4657 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 27.7°, θmin = 2.6° |
| ω scan | |
| Absorption correction: multi-scan ( | |
| 15110 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 7494 reflections | (Δ/σ)max < 0.001 |
| 263 parameters | Δρmax = 0.31 e Å−3 |
| 0 restraints | Δρmin = −0.32 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.84974 (15) | 0.35509 (7) | 0.8918 (2) | 0.0223 (4) | |
| O2 | 1.35476 (15) | 0.69761 (8) | 0.6108 (2) | 0.0274 (4) | |
| N1 | 1.05626 (18) | 0.39321 (9) | 0.9372 (2) | 0.0179 (5) | |
| H1n | 1.091 (2) | 0.4294 (12) | 0.919 (3) | 0.024 (7)* | |
| N2 | 0.88515 (19) | 0.45303 (9) | 0.7984 (3) | 0.0192 (5) | |
| H2n | 0.803 (3) | 0.4582 (11) | 0.770 (3) | 0.020 (7)* | |
| N3 | 0.97616 (17) | 0.49398 (9) | 0.7705 (3) | 0.0181 (4) | |
| N4 | 0.61494 (17) | 0.54805 (8) | 0.3870 (2) | 0.0166 (4) | |
| N5 | 0.40525 (18) | 0.53958 (9) | 0.2745 (3) | 0.0230 (5) | |
| C1 | 1.1287 (2) | 0.34837 (10) | 1.0450 (3) | 0.0173 (5) | |
| C2 | 1.0727 (2) | 0.30283 (10) | 1.1230 (3) | 0.0212 (5) | |
| H2A | 0.9817 | 0.3003 | 1.1018 | 0.025* | |
| C3 | 1.1496 (2) | 0.26135 (11) | 1.2310 (3) | 0.0261 (6) | |
| H3 | 1.1111 | 0.2306 | 1.2845 | 0.031* | |
| C4 | 1.2818 (2) | 0.26431 (11) | 1.2618 (3) | 0.0262 (6) | |
| H4 | 1.3343 | 0.2357 | 1.3360 | 0.031* | |
| C5 | 1.3371 (2) | 0.30935 (11) | 1.1838 (3) | 0.0249 (6) | |
| H5 | 1.4281 | 0.3112 | 1.2056 | 0.030* | |
| C6 | 1.2633 (2) | 0.35195 (11) | 1.0743 (3) | 0.0199 (5) | |
| C7 | 1.3245 (2) | 0.40109 (12) | 0.9928 (3) | 0.0263 (6) | |
| H7A | 1.2901 | 0.3967 | 0.8780 | 0.040* | |
| H7B | 1.4178 | 0.3944 | 1.0214 | 0.040* | |
| H7C | 1.3055 | 0.4443 | 1.0255 | 0.040* | |
| C8 | 0.9257 (2) | 0.39659 (10) | 0.8786 (3) | 0.0172 (5) | |
| C9 | 0.9418 (2) | 0.54534 (9) | 0.6881 (3) | 0.0156 (5) | |
| C10 | 1.0481 (2) | 0.58629 (10) | 0.6644 (3) | 0.0170 (5) | |
| C11 | 1.1687 (2) | 0.58495 (10) | 0.7738 (3) | 0.0171 (5) | |
| H11 | 1.1824 | 0.5577 | 0.8638 | 0.020* | |
| C12 | 1.2674 (2) | 0.62245 (11) | 0.7526 (3) | 0.0202 (5) | |
| H12 | 1.3486 | 0.6212 | 0.8285 | 0.024* | |
| C13 | 1.2499 (2) | 0.66239 (10) | 0.6209 (3) | 0.0191 (5) | |
| C14 | 1.1307 (2) | 0.66451 (10) | 0.5107 (3) | 0.0206 (5) | |
| H14 | 1.1175 | 0.6912 | 0.4197 | 0.025* | |
| C15 | 1.0311 (2) | 0.62687 (10) | 0.5357 (3) | 0.0201 (5) | |
| H15 | 0.9489 | 0.6292 | 0.4620 | 0.024* | |
| C16 | 1.3358 (2) | 0.74429 (11) | 0.4871 (3) | 0.0291 (6) | |
| H16A | 1.4176 | 0.7657 | 0.4912 | 0.044* | |
| H16B | 1.2728 | 0.7763 | 0.5006 | 0.044* | |
| H16C | 1.3040 | 0.7229 | 0.3845 | 0.044* | |
| C17 | 0.8032 (2) | 0.56417 (10) | 0.6144 (3) | 0.0164 (5) | |
| H17A | 0.7981 | 0.6112 | 0.5958 | 0.020* | |
| H17B | 0.7510 | 0.5537 | 0.6886 | 0.020* | |
| C18 | 0.7482 (2) | 0.52920 (10) | 0.4584 (3) | 0.0174 (5) | |
| H18A | 0.8008 | 0.5393 | 0.3845 | 0.021* | |
| H18B | 0.7523 | 0.4822 | 0.4772 | 0.021* | |
| C19 | 0.5669 (2) | 0.60937 (11) | 0.3609 (3) | 0.0226 (6) | |
| H19 | 0.6141 | 0.6483 | 0.3862 | 0.027* | |
| C20 | 0.4397 (2) | 0.60370 (11) | 0.2921 (3) | 0.0235 (6) | |
| H20 | 0.3821 | 0.6388 | 0.2604 | 0.028* | |
| C21 | 0.5137 (2) | 0.50860 (11) | 0.3321 (3) | 0.0212 (6) | |
| H21 | 0.5201 | 0.4630 | 0.3348 | 0.025* |
| O1 | 0.0201 (8) | 0.0256 (8) | 0.0198 (10) | −0.0039 (7) | 0.0030 (7) | 0.0045 (7) |
| O2 | 0.0192 (9) | 0.0309 (9) | 0.0319 (12) | −0.0056 (7) | 0.0066 (8) | 0.0031 (8) |
| N1 | 0.0172 (10) | 0.0152 (9) | 0.0202 (12) | −0.0024 (8) | 0.0031 (9) | 0.0063 (8) |
| N2 | 0.0131 (10) | 0.0224 (10) | 0.0207 (12) | −0.0005 (8) | 0.0019 (9) | 0.0047 (9) |
| N3 | 0.0165 (10) | 0.0220 (10) | 0.0162 (11) | −0.0015 (8) | 0.0051 (8) | −0.0004 (8) |
| N4 | 0.0145 (9) | 0.0216 (9) | 0.0127 (11) | −0.0001 (7) | 0.0020 (8) | 0.0002 (8) |
| N5 | 0.0172 (10) | 0.0275 (11) | 0.0224 (12) | 0.0039 (8) | 0.0019 (9) | 0.0017 (9) |
| C1 | 0.0215 (12) | 0.0173 (11) | 0.0106 (12) | 0.0054 (9) | 0.0000 (10) | −0.0029 (9) |
| C2 | 0.0232 (13) | 0.0213 (12) | 0.0179 (14) | −0.0024 (9) | 0.0030 (11) | −0.0015 (10) |
| C3 | 0.0367 (15) | 0.0209 (12) | 0.0192 (15) | −0.0027 (10) | 0.0050 (12) | 0.0019 (10) |
| C4 | 0.0346 (14) | 0.0200 (12) | 0.0194 (15) | 0.0101 (10) | −0.0012 (12) | 0.0027 (10) |
| C5 | 0.0213 (13) | 0.0306 (13) | 0.0198 (14) | 0.0063 (10) | 0.0003 (11) | −0.0065 (11) |
| C6 | 0.0221 (12) | 0.0229 (11) | 0.0139 (13) | 0.0017 (9) | 0.0032 (10) | −0.0041 (10) |
| C7 | 0.0155 (12) | 0.0370 (14) | 0.0252 (15) | 0.0038 (10) | 0.0031 (11) | 0.0067 (12) |
| C8 | 0.0206 (12) | 0.0212 (11) | 0.0104 (12) | −0.0026 (9) | 0.0051 (10) | −0.0021 (10) |
| C9 | 0.0168 (11) | 0.0154 (10) | 0.0136 (13) | −0.0004 (9) | 0.0018 (9) | −0.0018 (9) |
| C10 | 0.0154 (11) | 0.0184 (11) | 0.0164 (13) | 0.0018 (9) | 0.0027 (10) | −0.0051 (10) |
| C11 | 0.0203 (12) | 0.0164 (10) | 0.0137 (13) | 0.0026 (9) | 0.0029 (10) | −0.0013 (9) |
| C12 | 0.0131 (11) | 0.0256 (12) | 0.0198 (14) | 0.0044 (9) | 0.0009 (10) | −0.0051 (10) |
| C13 | 0.0160 (12) | 0.0190 (11) | 0.0236 (14) | 0.0009 (9) | 0.0073 (10) | −0.0054 (10) |
| C14 | 0.0219 (12) | 0.0206 (11) | 0.0182 (14) | −0.0002 (9) | 0.0036 (10) | 0.0028 (10) |
| C15 | 0.0148 (11) | 0.0216 (11) | 0.0213 (14) | 0.0028 (9) | 0.0000 (10) | −0.0015 (10) |
| C16 | 0.0287 (14) | 0.0244 (12) | 0.0383 (19) | −0.0028 (11) | 0.0158 (13) | 0.0034 (12) |
| C17 | 0.0138 (11) | 0.0195 (11) | 0.0161 (13) | 0.0040 (8) | 0.0043 (10) | 0.0007 (10) |
| C18 | 0.0142 (11) | 0.0203 (11) | 0.0171 (13) | 0.0028 (9) | 0.0031 (10) | −0.0008 (10) |
| C19 | 0.0221 (12) | 0.0188 (11) | 0.0263 (15) | 0.0020 (9) | 0.0050 (11) | 0.0015 (11) |
| C20 | 0.0212 (13) | 0.0247 (12) | 0.0233 (15) | 0.0077 (10) | 0.0034 (11) | 0.0034 (11) |
| C21 | 0.0182 (12) | 0.0247 (12) | 0.0189 (15) | 0.0008 (9) | 0.0017 (11) | −0.0016 (11) |
| O1—C8 | 1.216 (3) | C7—H7B | 0.9800 |
| O2—C13 | 1.369 (3) | C7—H7C | 0.9800 |
| O2—C16 | 1.429 (3) | C9—C10 | 1.485 (3) |
| N1—C8 | 1.366 (3) | C9—C17 | 1.514 (3) |
| N1—C1 | 1.408 (3) | C10—C15 | 1.381 (3) |
| N1—H1n | 0.87 (3) | C10—C11 | 1.397 (3) |
| N2—N3 | 1.369 (3) | C11—C12 | 1.371 (3) |
| N2—C8 | 1.378 (3) | C11—H11 | 0.9500 |
| N2—H2n | 0.87 (3) | C12—C13 | 1.393 (3) |
| N3—C9 | 1.287 (3) | C12—H12 | 0.9500 |
| N4—C21 | 1.348 (3) | C13—C14 | 1.389 (3) |
| N4—C19 | 1.371 (3) | C14—C15 | 1.392 (3) |
| N4—C18 | 1.460 (3) | C14—H14 | 0.9500 |
| N5—C21 | 1.313 (3) | C15—H15 | 0.9500 |
| N5—C20 | 1.381 (3) | C16—H16A | 0.9800 |
| C1—C2 | 1.394 (3) | C16—H16B | 0.9800 |
| C1—C6 | 1.408 (3) | C16—H16C | 0.9800 |
| C2—C3 | 1.383 (3) | C17—C18 | 1.523 (3) |
| C2—H2A | 0.9500 | C17—H17A | 0.9900 |
| C3—C4 | 1.380 (4) | C17—H17B | 0.9900 |
| C3—H3 | 0.9500 | C18—H18A | 0.9900 |
| C4—C5 | 1.384 (4) | C18—H18B | 0.9900 |
| C4—H4 | 0.9500 | C19—C20 | 1.349 (3) |
| C5—C6 | 1.390 (3) | C19—H19 | 0.9500 |
| C5—H5 | 0.9500 | C20—H20 | 0.9500 |
| C6—C7 | 1.495 (3) | C21—H21 | 0.9500 |
| C7—H7A | 0.9800 | ||
| C13—O2—C16 | 117.18 (18) | C11—C10—C9 | 120.3 (2) |
| C8—N1—C1 | 128.3 (2) | C12—C11—C10 | 120.7 (2) |
| C8—N1—H1n | 109.8 (16) | C12—C11—H11 | 119.6 |
| C1—N1—H1n | 120.2 (17) | C10—C11—H11 | 119.6 |
| N3—N2—C8 | 118.31 (19) | C11—C12—C13 | 120.7 (2) |
| N3—N2—H2n | 126.9 (16) | C11—C12—H12 | 119.6 |
| C8—N2—H2n | 114.7 (16) | C13—C12—H12 | 119.6 |
| C9—N3—N2 | 120.13 (19) | O2—C13—C14 | 124.5 (2) |
| C21—N4—C19 | 105.71 (18) | O2—C13—C12 | 116.0 (2) |
| C21—N4—C18 | 127.00 (18) | C14—C13—C12 | 119.6 (2) |
| C19—N4—C18 | 127.29 (18) | C13—C14—C15 | 118.9 (2) |
| C21—N5—C20 | 104.13 (19) | C13—C14—H14 | 120.6 |
| C2—C1—C6 | 120.4 (2) | C15—C14—H14 | 120.6 |
| C2—C1—N1 | 122.9 (2) | C10—C15—C14 | 122.0 (2) |
| C6—C1—N1 | 116.7 (2) | C10—C15—H15 | 119.0 |
| C3—C2—C1 | 120.0 (2) | C14—C15—H15 | 119.0 |
| C3—C2—H2A | 120.0 | O2—C16—H16A | 109.5 |
| C1—C2—H2A | 120.0 | O2—C16—H16B | 109.5 |
| C4—C3—C2 | 120.5 (2) | H16A—C16—H16B | 109.5 |
| C4—C3—H3 | 119.8 | O2—C16—H16C | 109.5 |
| C2—C3—H3 | 119.8 | H16A—C16—H16C | 109.5 |
| C3—C4—C5 | 119.4 (2) | H16B—C16—H16C | 109.5 |
| C3—C4—H4 | 120.3 | C9—C17—C18 | 111.45 (18) |
| C5—C4—H4 | 120.3 | C9—C17—H17A | 109.3 |
| C4—C5—C6 | 122.0 (2) | C18—C17—H17A | 109.3 |
| C4—C5—H5 | 119.0 | C9—C17—H17B | 109.3 |
| C6—C5—H5 | 119.0 | C18—C17—H17B | 109.3 |
| C5—C6—C1 | 117.8 (2) | H17A—C17—H17B | 108.0 |
| C5—C6—C7 | 121.4 (2) | N4—C18—C17 | 111.24 (18) |
| C1—C6—C7 | 120.8 (2) | N4—C18—H18A | 109.4 |
| C6—C7—H7A | 109.5 | C17—C18—H18A | 109.4 |
| C6—C7—H7B | 109.5 | N4—C18—H18B | 109.4 |
| H7A—C7—H7B | 109.5 | C17—C18—H18B | 109.4 |
| C6—C7—H7C | 109.5 | H18A—C18—H18B | 108.0 |
| H7A—C7—H7C | 109.5 | C20—C19—N4 | 106.7 (2) |
| H7B—C7—H7C | 109.5 | C20—C19—H19 | 126.6 |
| O1—C8—N1 | 125.5 (2) | N4—C19—H19 | 126.6 |
| O1—C8—N2 | 121.4 (2) | C19—C20—N5 | 110.2 (2) |
| N1—C8—N2 | 113.09 (19) | C19—C20—H20 | 124.9 |
| N3—C9—C10 | 115.8 (2) | N5—C20—H20 | 124.9 |
| N3—C9—C17 | 124.0 (2) | N5—C21—N4 | 113.2 (2) |
| C10—C9—C17 | 120.22 (19) | N5—C21—H21 | 123.4 |
| C15—C10—C11 | 118.1 (2) | N4—C21—H21 | 123.4 |
| C15—C10—C9 | 121.5 (2) | ||
| C8—N2—N3—C9 | 176.0 (2) | C15—C10—C11—C12 | −0.7 (3) |
| C8—N1—C1—C2 | −7.1 (4) | C9—C10—C11—C12 | 179.8 (2) |
| C8—N1—C1—C6 | 174.0 (2) | C10—C11—C12—C13 | −0.5 (3) |
| C6—C1—C2—C3 | 0.8 (4) | C16—O2—C13—C14 | 6.7 (3) |
| N1—C1—C2—C3 | −178.1 (2) | C16—O2—C13—C12 | −173.1 (2) |
| C1—C2—C3—C4 | −0.5 (4) | C11—C12—C13—O2 | −179.7 (2) |
| C2—C3—C4—C5 | 0.2 (4) | C11—C12—C13—C14 | 0.5 (3) |
| C3—C4—C5—C6 | −0.1 (4) | O2—C13—C14—C15 | −179.2 (2) |
| C4—C5—C6—C1 | 0.4 (4) | C12—C13—C14—C15 | 0.6 (3) |
| C4—C5—C6—C7 | 179.0 (2) | C11—C10—C15—C14 | 1.8 (3) |
| C2—C1—C6—C5 | −0.7 (3) | C9—C10—C15—C14 | −178.7 (2) |
| N1—C1—C6—C5 | 178.2 (2) | C13—C14—C15—C10 | −1.8 (4) |
| C2—C1—C6—C7 | −179.3 (2) | N3—C9—C17—C18 | −81.8 (3) |
| N1—C1—C6—C7 | −0.3 (3) | C10—C9—C17—C18 | 96.8 (2) |
| C1—N1—C8—O1 | −11.9 (4) | C21—N4—C18—C17 | −130.0 (2) |
| C1—N1—C8—N2 | 168.7 (2) | C19—N4—C18—C17 | 50.5 (3) |
| N3—N2—C8—O1 | −171.8 (2) | C9—C17—C18—N4 | −179.38 (18) |
| N3—N2—C8—N1 | 7.6 (3) | C21—N4—C19—C20 | 0.1 (3) |
| N2—N3—C9—C10 | −179.8 (2) | C18—N4—C19—C20 | 179.7 (2) |
| N2—N3—C9—C17 | −1.1 (4) | N4—C19—C20—N5 | 0.3 (3) |
| N3—C9—C10—C15 | 154.6 (2) | C21—N5—C20—C19 | −0.6 (3) |
| C17—C9—C10—C15 | −24.1 (3) | C20—N5—C21—N4 | 0.7 (3) |
| N3—C9—C10—C11 | −25.8 (3) | C19—N4—C21—N5 | −0.5 (3) |
| C17—C9—C10—C11 | 155.4 (2) | C18—N4—C21—N5 | 179.9 (2) |
| H··· | ||||
| N1—H1 | 0.87 (3) | 2.04 (2) | 2.568 (3) | 118 (2) |
| N2—H2 | 0.87 (3) | 2.17 (3) | 3.029 (3) | 171 (2) |
| C16—H16 | 0.98 | 2.44 | 3.398 (3) | 165 |
| C20—H20···O1i | 0.95 | 2.51 | 3.226 (3) | 133 |
| C17—H17 | 0.99 | 2.80 | 3.391 (3) | 119 |
| C18—H18 | 0.99 | 2.78 | 3.569 (2) | 137 |
Hydrogen-bond geometry (Å, °)
Cg2 and Cg3 are the centroids of the C1–C6 and C10–C15 benzene rings, respectively.
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.87 (3) | 2.04 (2) | 2.568 (3) | 118 (2) |
| N2—H2 | 0.87 (3) | 2.17 (3) | 3.029 (3) | 171 (2) |
| C16—H16 | 0.98 | 2.44 | 3.398 (3) | 165 |
| C20—H20⋯O1i | 0.95 | 2.51 | 3.226 (3) | 133 |
| C17—H17 | 0.99 | 2.80 | 3.391 (3) | 119 |
| C18—H18 | 0.99 | 2.78 | 3.569 (2) | 137 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .