Literature DB >> 22719573

1-{(E)-[3-(1H-Imidazol-1-yl)-1-(4-meth-oxy-phen-yl)propyl-idene]amino}-3-(2-methyl-phen-yl)urea.

Mohamed I Attia, Mohamed N Aboul-Enein, Nasser R El-Brollosy, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(21)H(23)N(5)O(2), the conformation about the imine bond [1.287 (3) Å] is E. Overall, the mol-ecule has a disk shape, the dihedral angles between the imidazole ring and the meth-oxy-phenyl and methyl-phenyl rings being 49.42 (13) and 42.62 (13)°, respectively; the dihedral angle between the benzene rings is 20.11 (11)°. In the urea moiety, the N-H atoms are anti to each other and one of these forms an intra-molecular N-H⋯N hydrogen bond. In the crystal, centrosymmetric dimers are formed via N-H⋯N(imidazole) hydrogen bonds, which are connected into a three-dimensional architecture by C-H⋯O(carbon-yl) and (methyl-ene)C-H⋯π inter-actions. The crystal studied was a non-merohedral twin with a minor component of 48.3 (1)%.

Entities:  

Year:  2012        PMID: 22719573      PMCID: PMC3379375          DOI: 10.1107/S1600536812021903

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the prevalence of epilepsy and epilepsy drugs, see: Sander & Shorvon (1987 ▶); Saxena & Saxena (1995 ▶); Edafiogho & Scott (1996 ▶). For the use of aryl semicarbazones as anti-convulsants, see: Aboul-Enein et al. (2012 ▶); Dimmock et al. (1993 ▶, 1995 ▶). For a related structure, see: Attia et al. (2012 ▶).

Experimental

Crystal data

C21H23N5O2 M = 377.44 Monoclinic, a = 10.7798 (12) Å b = 20.7750 (19) Å c = 8.7652 (18) Å β = 105.318 (15)° V = 1893.2 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.35 × 0.15 × 0.03 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.692, T max = 1.000 15110 measured reflections 7494 independent reflections 4657 reflections with I > 2σ(I) R int = 0.080

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.216 S = 0.98 7494 reflections 263 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.32 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812021903/gg2079sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812021903/gg2079Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812021903/gg2079Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H23N5O2F(000) = 800
Mr = 377.44Dx = 1.324 Mg m3
Monoclinic, P21/cMelting point: 364 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 10.7798 (12) ÅCell parameters from 1904 reflections
b = 20.7750 (19) Åθ = 2.4–27.5°
c = 8.7652 (18) ŵ = 0.09 mm1
β = 105.318 (15)°T = 100 K
V = 1893.2 (5) Å3Prism, colourless
Z = 40.35 × 0.15 × 0.03 mm
Agilent SuperNova Dual diffractometer with an Atlas detector7494 independent reflections
Radiation source: SuperNova (Mo) X-ray Source4657 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.080
Detector resolution: 10.4041 pixels mm-1θmax = 27.7°, θmin = 2.6°
ω scanh = −12→14
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −27→27
Tmin = 0.692, Tmax = 1.000l = −11→11
15110 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.216H atoms treated by a mixture of independent and constrained refinement
S = 0.98w = 1/[σ2(Fo2) + (0.1326P)2] where P = (Fo2 + 2Fc2)/3
7494 reflections(Δ/σ)max < 0.001
263 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.84974 (15)0.35509 (7)0.8918 (2)0.0223 (4)
O21.35476 (15)0.69761 (8)0.6108 (2)0.0274 (4)
N11.05626 (18)0.39321 (9)0.9372 (2)0.0179 (5)
H1n1.091 (2)0.4294 (12)0.919 (3)0.024 (7)*
N20.88515 (19)0.45303 (9)0.7984 (3)0.0192 (5)
H2n0.803 (3)0.4582 (11)0.770 (3)0.020 (7)*
N30.97616 (17)0.49398 (9)0.7705 (3)0.0181 (4)
N40.61494 (17)0.54805 (8)0.3870 (2)0.0166 (4)
N50.40525 (18)0.53958 (9)0.2745 (3)0.0230 (5)
C11.1287 (2)0.34837 (10)1.0450 (3)0.0173 (5)
C21.0727 (2)0.30283 (10)1.1230 (3)0.0212 (5)
H2A0.98170.30031.10180.025*
C31.1496 (2)0.26135 (11)1.2310 (3)0.0261 (6)
H31.11110.23061.28450.031*
C41.2818 (2)0.26431 (11)1.2618 (3)0.0262 (6)
H41.33430.23571.33600.031*
C51.3371 (2)0.30935 (11)1.1838 (3)0.0249 (6)
H51.42810.31121.20560.030*
C61.2633 (2)0.35195 (11)1.0743 (3)0.0199 (5)
C71.3245 (2)0.40109 (12)0.9928 (3)0.0263 (6)
H7A1.29010.39670.87800.040*
H7B1.41780.39441.02140.040*
H7C1.30550.44431.02550.040*
C80.9257 (2)0.39659 (10)0.8786 (3)0.0172 (5)
C90.9418 (2)0.54534 (9)0.6881 (3)0.0156 (5)
C101.0481 (2)0.58629 (10)0.6644 (3)0.0170 (5)
C111.1687 (2)0.58495 (10)0.7738 (3)0.0171 (5)
H111.18240.55770.86380.020*
C121.2674 (2)0.62245 (11)0.7526 (3)0.0202 (5)
H121.34860.62120.82850.024*
C131.2499 (2)0.66239 (10)0.6209 (3)0.0191 (5)
C141.1307 (2)0.66451 (10)0.5107 (3)0.0206 (5)
H141.11750.69120.41970.025*
C151.0311 (2)0.62687 (10)0.5357 (3)0.0201 (5)
H150.94890.62920.46200.024*
C161.3358 (2)0.74429 (11)0.4871 (3)0.0291 (6)
H16A1.41760.76570.49120.044*
H16B1.27280.77630.50060.044*
H16C1.30400.72290.38450.044*
C170.8032 (2)0.56417 (10)0.6144 (3)0.0164 (5)
H17A0.79810.61120.59580.020*
H17B0.75100.55370.68860.020*
C180.7482 (2)0.52920 (10)0.4584 (3)0.0174 (5)
H18A0.80080.53930.38450.021*
H18B0.75230.48220.47720.021*
C190.5669 (2)0.60937 (11)0.3609 (3)0.0226 (6)
H190.61410.64830.38620.027*
C200.4397 (2)0.60370 (11)0.2921 (3)0.0235 (6)
H200.38210.63880.26040.028*
C210.5137 (2)0.50860 (11)0.3321 (3)0.0212 (6)
H210.52010.46300.33480.025*
U11U22U33U12U13U23
O10.0201 (8)0.0256 (8)0.0198 (10)−0.0039 (7)0.0030 (7)0.0045 (7)
O20.0192 (9)0.0309 (9)0.0319 (12)−0.0056 (7)0.0066 (8)0.0031 (8)
N10.0172 (10)0.0152 (9)0.0202 (12)−0.0024 (8)0.0031 (9)0.0063 (8)
N20.0131 (10)0.0224 (10)0.0207 (12)−0.0005 (8)0.0019 (9)0.0047 (9)
N30.0165 (10)0.0220 (10)0.0162 (11)−0.0015 (8)0.0051 (8)−0.0004 (8)
N40.0145 (9)0.0216 (9)0.0127 (11)−0.0001 (7)0.0020 (8)0.0002 (8)
N50.0172 (10)0.0275 (11)0.0224 (12)0.0039 (8)0.0019 (9)0.0017 (9)
C10.0215 (12)0.0173 (11)0.0106 (12)0.0054 (9)0.0000 (10)−0.0029 (9)
C20.0232 (13)0.0213 (12)0.0179 (14)−0.0024 (9)0.0030 (11)−0.0015 (10)
C30.0367 (15)0.0209 (12)0.0192 (15)−0.0027 (10)0.0050 (12)0.0019 (10)
C40.0346 (14)0.0200 (12)0.0194 (15)0.0101 (10)−0.0012 (12)0.0027 (10)
C50.0213 (13)0.0306 (13)0.0198 (14)0.0063 (10)0.0003 (11)−0.0065 (11)
C60.0221 (12)0.0229 (11)0.0139 (13)0.0017 (9)0.0032 (10)−0.0041 (10)
C70.0155 (12)0.0370 (14)0.0252 (15)0.0038 (10)0.0031 (11)0.0067 (12)
C80.0206 (12)0.0212 (11)0.0104 (12)−0.0026 (9)0.0051 (10)−0.0021 (10)
C90.0168 (11)0.0154 (10)0.0136 (13)−0.0004 (9)0.0018 (9)−0.0018 (9)
C100.0154 (11)0.0184 (11)0.0164 (13)0.0018 (9)0.0027 (10)−0.0051 (10)
C110.0203 (12)0.0164 (10)0.0137 (13)0.0026 (9)0.0029 (10)−0.0013 (9)
C120.0131 (11)0.0256 (12)0.0198 (14)0.0044 (9)0.0009 (10)−0.0051 (10)
C130.0160 (12)0.0190 (11)0.0236 (14)0.0009 (9)0.0073 (10)−0.0054 (10)
C140.0219 (12)0.0206 (11)0.0182 (14)−0.0002 (9)0.0036 (10)0.0028 (10)
C150.0148 (11)0.0216 (11)0.0213 (14)0.0028 (9)0.0000 (10)−0.0015 (10)
C160.0287 (14)0.0244 (12)0.0383 (19)−0.0028 (11)0.0158 (13)0.0034 (12)
C170.0138 (11)0.0195 (11)0.0161 (13)0.0040 (8)0.0043 (10)0.0007 (10)
C180.0142 (11)0.0203 (11)0.0171 (13)0.0028 (9)0.0031 (10)−0.0008 (10)
C190.0221 (12)0.0188 (11)0.0263 (15)0.0020 (9)0.0050 (11)0.0015 (11)
C200.0212 (13)0.0247 (12)0.0233 (15)0.0077 (10)0.0034 (11)0.0034 (11)
C210.0182 (12)0.0247 (12)0.0189 (15)0.0008 (9)0.0017 (11)−0.0016 (11)
O1—C81.216 (3)C7—H7B0.9800
O2—C131.369 (3)C7—H7C0.9800
O2—C161.429 (3)C9—C101.485 (3)
N1—C81.366 (3)C9—C171.514 (3)
N1—C11.408 (3)C10—C151.381 (3)
N1—H1n0.87 (3)C10—C111.397 (3)
N2—N31.369 (3)C11—C121.371 (3)
N2—C81.378 (3)C11—H110.9500
N2—H2n0.87 (3)C12—C131.393 (3)
N3—C91.287 (3)C12—H120.9500
N4—C211.348 (3)C13—C141.389 (3)
N4—C191.371 (3)C14—C151.392 (3)
N4—C181.460 (3)C14—H140.9500
N5—C211.313 (3)C15—H150.9500
N5—C201.381 (3)C16—H16A0.9800
C1—C21.394 (3)C16—H16B0.9800
C1—C61.408 (3)C16—H16C0.9800
C2—C31.383 (3)C17—C181.523 (3)
C2—H2A0.9500C17—H17A0.9900
C3—C41.380 (4)C17—H17B0.9900
C3—H30.9500C18—H18A0.9900
C4—C51.384 (4)C18—H18B0.9900
C4—H40.9500C19—C201.349 (3)
C5—C61.390 (3)C19—H190.9500
C5—H50.9500C20—H200.9500
C6—C71.495 (3)C21—H210.9500
C7—H7A0.9800
C13—O2—C16117.18 (18)C11—C10—C9120.3 (2)
C8—N1—C1128.3 (2)C12—C11—C10120.7 (2)
C8—N1—H1n109.8 (16)C12—C11—H11119.6
C1—N1—H1n120.2 (17)C10—C11—H11119.6
N3—N2—C8118.31 (19)C11—C12—C13120.7 (2)
N3—N2—H2n126.9 (16)C11—C12—H12119.6
C8—N2—H2n114.7 (16)C13—C12—H12119.6
C9—N3—N2120.13 (19)O2—C13—C14124.5 (2)
C21—N4—C19105.71 (18)O2—C13—C12116.0 (2)
C21—N4—C18127.00 (18)C14—C13—C12119.6 (2)
C19—N4—C18127.29 (18)C13—C14—C15118.9 (2)
C21—N5—C20104.13 (19)C13—C14—H14120.6
C2—C1—C6120.4 (2)C15—C14—H14120.6
C2—C1—N1122.9 (2)C10—C15—C14122.0 (2)
C6—C1—N1116.7 (2)C10—C15—H15119.0
C3—C2—C1120.0 (2)C14—C15—H15119.0
C3—C2—H2A120.0O2—C16—H16A109.5
C1—C2—H2A120.0O2—C16—H16B109.5
C4—C3—C2120.5 (2)H16A—C16—H16B109.5
C4—C3—H3119.8O2—C16—H16C109.5
C2—C3—H3119.8H16A—C16—H16C109.5
C3—C4—C5119.4 (2)H16B—C16—H16C109.5
C3—C4—H4120.3C9—C17—C18111.45 (18)
C5—C4—H4120.3C9—C17—H17A109.3
C4—C5—C6122.0 (2)C18—C17—H17A109.3
C4—C5—H5119.0C9—C17—H17B109.3
C6—C5—H5119.0C18—C17—H17B109.3
C5—C6—C1117.8 (2)H17A—C17—H17B108.0
C5—C6—C7121.4 (2)N4—C18—C17111.24 (18)
C1—C6—C7120.8 (2)N4—C18—H18A109.4
C6—C7—H7A109.5C17—C18—H18A109.4
C6—C7—H7B109.5N4—C18—H18B109.4
H7A—C7—H7B109.5C17—C18—H18B109.4
C6—C7—H7C109.5H18A—C18—H18B108.0
H7A—C7—H7C109.5C20—C19—N4106.7 (2)
H7B—C7—H7C109.5C20—C19—H19126.6
O1—C8—N1125.5 (2)N4—C19—H19126.6
O1—C8—N2121.4 (2)C19—C20—N5110.2 (2)
N1—C8—N2113.09 (19)C19—C20—H20124.9
N3—C9—C10115.8 (2)N5—C20—H20124.9
N3—C9—C17124.0 (2)N5—C21—N4113.2 (2)
C10—C9—C17120.22 (19)N5—C21—H21123.4
C15—C10—C11118.1 (2)N4—C21—H21123.4
C15—C10—C9121.5 (2)
C8—N2—N3—C9176.0 (2)C15—C10—C11—C12−0.7 (3)
C8—N1—C1—C2−7.1 (4)C9—C10—C11—C12179.8 (2)
C8—N1—C1—C6174.0 (2)C10—C11—C12—C13−0.5 (3)
C6—C1—C2—C30.8 (4)C16—O2—C13—C146.7 (3)
N1—C1—C2—C3−178.1 (2)C16—O2—C13—C12−173.1 (2)
C1—C2—C3—C4−0.5 (4)C11—C12—C13—O2−179.7 (2)
C2—C3—C4—C50.2 (4)C11—C12—C13—C140.5 (3)
C3—C4—C5—C6−0.1 (4)O2—C13—C14—C15−179.2 (2)
C4—C5—C6—C10.4 (4)C12—C13—C14—C150.6 (3)
C4—C5—C6—C7179.0 (2)C11—C10—C15—C141.8 (3)
C2—C1—C6—C5−0.7 (3)C9—C10—C15—C14−178.7 (2)
N1—C1—C6—C5178.2 (2)C13—C14—C15—C10−1.8 (4)
C2—C1—C6—C7−179.3 (2)N3—C9—C17—C18−81.8 (3)
N1—C1—C6—C7−0.3 (3)C10—C9—C17—C1896.8 (2)
C1—N1—C8—O1−11.9 (4)C21—N4—C18—C17−130.0 (2)
C1—N1—C8—N2168.7 (2)C19—N4—C18—C1750.5 (3)
N3—N2—C8—O1−171.8 (2)C9—C17—C18—N4−179.38 (18)
N3—N2—C8—N17.6 (3)C21—N4—C19—C200.1 (3)
N2—N3—C9—C10−179.8 (2)C18—N4—C19—C20179.7 (2)
N2—N3—C9—C17−1.1 (4)N4—C19—C20—N50.3 (3)
N3—C9—C10—C15154.6 (2)C21—N5—C20—C19−0.6 (3)
C17—C9—C10—C15−24.1 (3)C20—N5—C21—N40.7 (3)
N3—C9—C10—C11−25.8 (3)C19—N4—C21—N5−0.5 (3)
C17—C9—C10—C11155.4 (2)C18—N4—C21—N5179.9 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1n···N30.87 (3)2.04 (2)2.568 (3)118 (2)
N2—H2n···N5i0.87 (3)2.17 (3)3.029 (3)171 (2)
C16—H16B···O1ii0.982.443.398 (3)165
C20—H20···O1i0.952.513.226 (3)133
C17—H17A···Cg2iii0.992.803.391 (3)119
C18—H18B···Cg3iv0.992.783.569 (2)137
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 and Cg3 are the centroids of the C1–C6 and C10–C15 benzene rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1n⋯N30.87 (3)2.04 (2)2.568 (3)118 (2)
N2—H2n⋯N5i0.87 (3)2.17 (3)3.029 (3)171 (2)
C16—H16B⋯O1ii0.982.443.398 (3)165
C20—H20⋯O1i0.952.513.226 (3)133
C17—H17ACg2iii0.992.803.391 (3)119
C18—H18BCg3iv0.992.783.569 (2)137

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Developments in anticonvulsants.

Authors:  A K Saxena; M Saxena
Journal:  Prog Drug Res       Date:  1995

Review 3.  Incidence and prevalence studies in epilepsy and their methodological problems: a review.

Authors:  J W Sander; S D Shorvon
Journal:  J Neurol Neurosurg Psychiatry       Date:  1987-07       Impact factor: 10.154

4.  Design and synthesis of novel stiripentol analogues as potential anticonvulsants.

Authors:  Mohamed N Aboul-Enein; Aida A El-Azzouny; Mohamed I Attia; Yousreya A Maklad; Kamilia M Amin; Mohamed Abdel-Rehim; Mohammed F El-Behairy
Journal:  Eur J Med Chem       Date:  2011-11-11       Impact factor: 6.514

5.  Anticonvulsant activities of some arylsemicarbazones displaying potent oral activity in the maximal electroshock screen in rats accompanied by high protection indices.

Authors:  J R Dimmock; K K Sidhu; R S Thayer; P Mack; M J Duffy; R S Reid; J W Quail; U Pugazhenthi; A Ong; J A Bikker
Journal:  J Med Chem       Date:  1993-08-06       Impact factor: 7.446

  5 in total
  2 in total

1.  1-{(E)-[3-(1H-Imidazol-1-yl)-1-phenyl-propyl-idene]amino}-3-(2-methyl-phen-yl)urea.

Authors:  Mohamed I Attia; Mohamed N Aboul-Enein; Nasser R El-Brollosy; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-23

2.  Anticonvulsant potential of certain new (2E)-2-[1-Aryl-3-(1H-imidazol-1-yl)propylidene]-N-(aryl/H)hydrazinecarboxamides.

Authors:  Mohamed I Attia; Mohamed N Aboul-Enein; Aida A El-Azzouny; Yousreya A Maklad; Hazem A Ghabbour
Journal:  ScientificWorldJournal       Date:  2014-01-12
  2 in total

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