Literature DB >> 22719613

dl-Alaninium iodide.

Kevin Lamberts1, Ulli Englert.   

Abstract

The crystal structure of dl-alanine hydro-iodide (1-carb-oxy-ethanaminium iodide), C(3)H(8)NO(2) (+)·I(-), is that of an organic salt consisting of N-protonated cations and iodide anions. The compound features homochiral helices of N-H⋯O hydrogen-bonded cations in the [010] direction; neighbouring chains are related by crystallographic inversion centers and hence show opposite chirality. The iodide counter-anions act as hydrogen-bond acceptors towards H atoms of the ammonium and carb-oxy groups, and cross-link the chains along [100]. Thus, an overall two-dimensional network is formed in the ab plane. No short contacts occur between iodide anions.

Entities:  

Year:  2012        PMID: 22719613      PMCID: PMC3379415          DOI: 10.1107/S1600536812022003

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures of l-alanine hydro­chloride, see: Di Blasio et al. (1977 ▶), d-alanine alaninium bromide, see: Fischer (2006 ▶), l-alanine hydro­chloride monohydrate, see: Yamada et al. (2008 ▶) and dl-alanine hydro­chloride, see: Trotter (1962 ▶).

Experimental

Crystal data

C3H8NO2 +·I− M = 217.00 Monoclinic, a = 7.6975 (11) Å b = 5.7776 (8) Å c = 16.034 (2) Å β = 98.999 (2)° V = 704.30 (17) Å3 Z = 4 Mo Kα radiation μ = 4.46 mm−1 T = 100 K 0.30 × 0.11 × 0.05 mm

Data collection

Bruker D8 goniometer with SMART APEX CCD detector Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.348, T max = 0.808 10196 measured reflections 2109 independent reflections 1887 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.062 S = 1.05 2109 reflections 77 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.17 e Å−3 Δρmin = −1.87 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812022003/nk2163sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812022003/nk2163Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812022003/nk2163Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C3H8NO2+·IF(000) = 408
Mr = 217.00Dx = 2.047 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3131 reflections
a = 7.6975 (11) Åθ = 2.6–30.3°
b = 5.7776 (8) ŵ = 4.46 mm1
c = 16.034 (2) ÅT = 100 K
β = 98.999 (2)°Needle, colourless
V = 704.30 (17) Å30.30 × 0.11 × 0.05 mm
Z = 4
Bruker D8 goniometer with SMART APEX CCD detector diffractometer2109 independent reflections
Radiation source: INCOATEC microsource1887 reflections with I > 2σ(I)
Multilayer optics monochromatorRint = 0.055
ω scansθmax = 30.7°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −10→11
Tmin = 0.348, Tmax = 0.808k = −8→8
10196 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.062H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.020P)2 + 0.4P] where P = (Fo2 + 2Fc2)/3
2109 reflections(Δ/σ)max = 0.001
77 parametersΔρmax = 1.17 e Å3
3 restraintsΔρmin = −1.87 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.78595 (2)0.38517 (3)0.868059 (10)0.01622 (7)
O10.4337 (3)0.6529 (4)0.92827 (13)0.0248 (5)
H10.508 (5)0.577 (6)0.913 (2)0.030*
O20.2836 (3)0.6020 (3)0.79725 (13)0.0193 (4)
C10.3013 (3)0.6870 (5)0.86701 (16)0.0162 (5)
C20.1684 (3)0.8526 (5)0.89481 (17)0.0158 (5)
H20.11690.78000.94200.019*
C30.2528 (4)1.0818 (5)0.9252 (2)0.0249 (6)
H3A0.16191.18880.93800.030*
H3B0.31201.14830.88090.030*
H3C0.33901.05580.97610.030*
N10.0254 (3)0.8877 (4)0.82138 (14)0.0143 (4)
H1A0.060 (4)0.928 (5)0.7744 (16)0.017*
H1B−0.052 (4)0.988 (5)0.834 (2)0.017*
H1C−0.036 (4)0.761 (4)0.811 (2)0.017*
U11U22U33U12U13U23
I10.01442 (11)0.01740 (11)0.01628 (10)0.00331 (6)0.00066 (7)0.00025 (6)
O10.0196 (10)0.0337 (12)0.0190 (10)0.0129 (9)−0.0036 (8)−0.0060 (9)
O20.0183 (10)0.0227 (11)0.0159 (9)0.0043 (7)0.0000 (8)−0.0040 (7)
C10.0153 (12)0.0167 (13)0.0164 (12)0.0011 (9)0.0021 (9)0.0011 (9)
C20.0146 (12)0.0185 (13)0.0136 (11)0.0032 (9)−0.0005 (9)−0.0007 (9)
C30.0220 (14)0.0223 (14)0.0272 (15)0.0040 (11)−0.0059 (12)−0.0102 (12)
N10.0146 (11)0.0154 (11)0.0119 (10)0.0010 (8)−0.0006 (8)0.0005 (8)
O1—C11.315 (3)C3—H3A0.98
O1—H10.79 (4)C3—H3B0.98
O2—C11.210 (3)C3—H3C0.98
C1—C21.517 (4)N1—H1A0.87 (2)
C2—N11.495 (3)N1—H1B0.88 (2)
C2—C31.521 (4)N1—H1C0.87 (2)
C2—H21.00
C1—O1—H1111 (3)C2—C3—H3B109.5
O2—C1—O1126.3 (3)H3A—C3—H3B109.5
O2—C1—C2123.0 (2)C2—C3—H3C109.5
O1—C1—C2110.8 (2)H3A—C3—H3C109.5
N1—C2—C1107.5 (2)H3B—C3—H3C109.5
N1—C2—C3111.1 (2)C2—N1—H1A115 (2)
C1—C2—C3111.7 (2)C2—N1—H1B110 (2)
N1—C2—H2108.8H1A—N1—H1B110 (3)
C1—C2—H2108.8C2—N1—H1C110 (2)
C3—C2—H2108.8H1A—N1—H1C107 (3)
C2—C3—H3A109.5H1B—N1—H1C103 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···I10.79 (4)2.61 (4)3.391 (2)171 (3)
N1—H1A···O2i0.87 (3)2.05 (3)2.861 (3)155 (3)
N1—H1B···I1ii0.88 (3)2.71 (3)3.557 (2)163 (3)
N1—H1C···I1iii0.87 (3)2.80 (3)3.580 (2)150 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯I10.79 (4)2.61 (4)3.391 (2)171 (3)
N1—H1A⋯O2i0.87 (3)2.05 (3)2.861 (3)155 (3)
N1—H1B⋯I1ii0.88 (3)2.71 (3)3.557 (2)163 (3)
N1—H1C⋯I1iii0.87 (3)2.80 (3)3.580 (2)150 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

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