| Literature DB >> 22719613 |
Kevin Lamberts1, Ulli Englert.
Abstract
The crystal structure of dl-alanine hydro-iodide (Entities:
Year: 2012 PMID: 22719613 PMCID: PMC3379415 DOI: 10.1107/S1600536812022003
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C3H8NO2+·I− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3131 reflections |
| θ = 2.6–30.3° | |
| µ = 4.46 mm−1 | |
| β = 98.999 (2)° | Needle, colourless |
| 0.30 × 0.11 × 0.05 mm | |
| Bruker D8 goniometer with SMART APEX CCD detector diffractometer | 2109 independent reflections |
| Radiation source: INCOATEC microsource | 1887 reflections with |
| Multilayer optics monochromator | |
| ω scans | θmax = 30.7°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 10196 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2109 reflections | (Δ/σ)max = 0.001 |
| 77 parameters | Δρmax = 1.17 e Å−3 |
| 3 restraints | Δρmin = −1.87 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| I1 | 0.78595 (2) | 0.38517 (3) | 0.868059 (10) | 0.01622 (7) | |
| O1 | 0.4337 (3) | 0.6529 (4) | 0.92827 (13) | 0.0248 (5) | |
| H1 | 0.508 (5) | 0.577 (6) | 0.913 (2) | 0.030* | |
| O2 | 0.2836 (3) | 0.6020 (3) | 0.79725 (13) | 0.0193 (4) | |
| C1 | 0.3013 (3) | 0.6870 (5) | 0.86701 (16) | 0.0162 (5) | |
| C2 | 0.1684 (3) | 0.8526 (5) | 0.89481 (17) | 0.0158 (5) | |
| H2 | 0.1169 | 0.7800 | 0.9420 | 0.019* | |
| C3 | 0.2528 (4) | 1.0818 (5) | 0.9252 (2) | 0.0249 (6) | |
| H3A | 0.1619 | 1.1888 | 0.9380 | 0.030* | |
| H3B | 0.3120 | 1.1483 | 0.8809 | 0.030* | |
| H3C | 0.3390 | 1.0558 | 0.9761 | 0.030* | |
| N1 | 0.0254 (3) | 0.8877 (4) | 0.82138 (14) | 0.0143 (4) | |
| H1A | 0.060 (4) | 0.928 (5) | 0.7744 (16) | 0.017* | |
| H1B | −0.052 (4) | 0.988 (5) | 0.834 (2) | 0.017* | |
| H1C | −0.036 (4) | 0.761 (4) | 0.811 (2) | 0.017* |
| I1 | 0.01442 (11) | 0.01740 (11) | 0.01628 (10) | 0.00331 (6) | 0.00066 (7) | 0.00025 (6) |
| O1 | 0.0196 (10) | 0.0337 (12) | 0.0190 (10) | 0.0129 (9) | −0.0036 (8) | −0.0060 (9) |
| O2 | 0.0183 (10) | 0.0227 (11) | 0.0159 (9) | 0.0043 (7) | 0.0000 (8) | −0.0040 (7) |
| C1 | 0.0153 (12) | 0.0167 (13) | 0.0164 (12) | 0.0011 (9) | 0.0021 (9) | 0.0011 (9) |
| C2 | 0.0146 (12) | 0.0185 (13) | 0.0136 (11) | 0.0032 (9) | −0.0005 (9) | −0.0007 (9) |
| C3 | 0.0220 (14) | 0.0223 (14) | 0.0272 (15) | 0.0040 (11) | −0.0059 (12) | −0.0102 (12) |
| N1 | 0.0146 (11) | 0.0154 (11) | 0.0119 (10) | 0.0010 (8) | −0.0006 (8) | 0.0005 (8) |
| O1—C1 | 1.315 (3) | C3—H3A | 0.98 |
| O1—H1 | 0.79 (4) | C3—H3B | 0.98 |
| O2—C1 | 1.210 (3) | C3—H3C | 0.98 |
| C1—C2 | 1.517 (4) | N1—H1A | 0.87 (2) |
| C2—N1 | 1.495 (3) | N1—H1B | 0.88 (2) |
| C2—C3 | 1.521 (4) | N1—H1C | 0.87 (2) |
| C2—H2 | 1.00 | ||
| C1—O1—H1 | 111 (3) | C2—C3—H3B | 109.5 |
| O2—C1—O1 | 126.3 (3) | H3A—C3—H3B | 109.5 |
| O2—C1—C2 | 123.0 (2) | C2—C3—H3C | 109.5 |
| O1—C1—C2 | 110.8 (2) | H3A—C3—H3C | 109.5 |
| N1—C2—C1 | 107.5 (2) | H3B—C3—H3C | 109.5 |
| N1—C2—C3 | 111.1 (2) | C2—N1—H1A | 115 (2) |
| C1—C2—C3 | 111.7 (2) | C2—N1—H1B | 110 (2) |
| N1—C2—H2 | 108.8 | H1A—N1—H1B | 110 (3) |
| C1—C2—H2 | 108.8 | C2—N1—H1C | 110 (2) |
| C3—C2—H2 | 108.8 | H1A—N1—H1C | 107 (3) |
| C2—C3—H3A | 109.5 | H1B—N1—H1C | 103 (3) |
| H··· | ||||
| O1—H1···I1 | 0.79 (4) | 2.61 (4) | 3.391 (2) | 171 (3) |
| N1—H1 | 0.87 (3) | 2.05 (3) | 2.861 (3) | 155 (3) |
| N1—H1 | 0.88 (3) | 2.71 (3) | 3.557 (2) | 163 (3) |
| N1—H1 | 0.87 (3) | 2.80 (3) | 3.580 (2) | 150 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯I1 | 0.79 (4) | 2.61 (4) | 3.391 (2) | 171 (3) |
| N1—H1 | 0.87 (3) | 2.05 (3) | 2.861 (3) | 155 (3) |
| N1—H1 | 0.88 (3) | 2.71 (3) | 3.557 (2) | 163 (3) |
| N1—H1 | 0.87 (3) | 2.80 (3) | 3.580 (2) | 150 (3) |
Symmetry codes: (i) ; (ii) ; (iii) .