| Literature DB >> 21202297 |
Kazuhiko Yamada, Akira Sato, Tadashi Shimizu, Toshio Yamazaki, Shigeyuki Yokoyama.
Abstract
Colorless crystals of l-alanine hydrochloride monohydrate, C(3)H(8)NO(2) (+)·Cl(-)·H(2)O, were obtained from a powder sample that had been left standing in a refrigerator for a few years. The structure displays several inter-molecular hydrogen bonds: the hydroxyl O atom is involved in a single hydrogen bond to the chloride anion, while the ammonium group forms one hydrogen bond to the chloride anion and two hydrogen bonds to water mol-ecules. An intermolecular bond between the carbonyl O atom and the ammonium group [2.8459 (15) Å] is also found.Entities:
Year: 2008 PMID: 21202297 PMCID: PMC2961131 DOI: 10.1107/S1600536808008751
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C3H8NO2+·Cl–·H2O | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 902 reflections |
| θ = 7.4–53.9º | |
| µ = 0.46 mm−1 | |
| Plate, colourless | |
| 0.45 × 0.40 × 0.35 mm |
| Bruker SMART APEX CCD area-detector diffractometer | 1467 independent reflections |
| Radiation source: fine-focus sealed tube | 1452 reflections with |
| Monochromator: graphite | |
| θmax = 27.0º | |
| ω scans | θmin = 2.7º |
| Absorption correction: multi-scan(SADABS; Bruker 2001) | |
| 5762 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| | |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.19 e Å−3 | |
| 1467 reflections | Δρmin = −0.20 e Å−3 |
| 84 parameters | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 533 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: 0.02 (6) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl | 0.19971 (4) | 0.55991 (3) | 1.25180 (2) | 0.02475 (10) | |
| C1 | 0.8057 (2) | 0.60202 (13) | 0.88317 (11) | 0.0295 (3) | |
| H1A | 0.9301 | 0.6167 | 0.8360 | 0.044* | |
| H1B | 0.7483 | 0.6872 | 0.9073 | 0.044* | |
| H1C | 0.6979 | 0.5540 | 0.8407 | 0.044* | |
| C2 | 0.6780 (2) | 0.49201 (12) | 1.06398 (10) | 0.0249 (2) | |
| N | 0.96092 (17) | 0.38728 (10) | 0.95162 (8) | 0.0230 (2) | |
| HA | 1.0116 | 0.3443 | 1.0124 | 0.034* | |
| HB | 1.0676 | 0.4003 | 0.9021 | 0.034* | |
| HC | 0.8577 | 0.3381 | 0.9193 | 0.034* | |
| O3 | 1.13229 (15) | 0.26883 (10) | 1.15289 (8) | 0.0261 (2) | |
| O1 | 0.60730 (17) | 0.38141 (9) | 1.08180 (8) | 0.0342 (2) | |
| O2 | 0.60094 (18) | 0.60494 (10) | 1.10708 (9) | 0.0374 (2) | |
| H2 | 0.4967 | 0.5880 | 1.1476 | 0.056* | |
| C3 | 0.87031 (18) | 0.51981 (12) | 0.98686 (10) | 0.0228 (2) | |
| H3 | 0.9801 | 0.5694 | 1.0299 | 0.027* | |
| H4 | 1.159 (3) | 0.335 (2) | 1.1930 (16) | 0.047 (5)* | |
| H5 | 1.050 (3) | 0.2271 (18) | 1.1882 (14) | 0.036 (5)* |
| Cl | 0.02114 (14) | 0.02522 (15) | 0.02790 (15) | 0.00128 (9) | 0.00012 (12) | −0.00516 (12) |
| C1 | 0.0308 (6) | 0.0239 (6) | 0.0337 (6) | 0.0021 (5) | 0.0026 (5) | 0.0073 (5) |
| C2 | 0.0260 (5) | 0.0230 (5) | 0.0256 (5) | 0.0013 (5) | 0.0015 (5) | −0.0018 (5) |
| N | 0.0232 (5) | 0.0200 (5) | 0.0257 (5) | 0.0019 (4) | 0.0028 (4) | 0.0023 (4) |
| O3 | 0.0281 (5) | 0.0235 (4) | 0.0268 (5) | −0.0044 (4) | 0.0023 (4) | −0.0008 (4) |
| O1 | 0.0398 (5) | 0.0238 (4) | 0.0389 (5) | −0.0059 (4) | 0.0160 (4) | −0.0029 (4) |
| O2 | 0.0384 (5) | 0.0244 (4) | 0.0494 (6) | 0.0011 (4) | 0.0183 (5) | −0.0046 (4) |
| C3 | 0.0227 (5) | 0.0183 (5) | 0.0274 (6) | −0.0003 (4) | 0.0011 (5) | −0.0002 (4) |
| C1—C3 | 1.5209 (17) | N—HA | 0.8900 |
| C1—H1A | 0.9600 | N—HB | 0.8900 |
| C1—H1B | 0.9600 | N—HC | 0.8900 |
| C1—H1C | 0.9600 | O3—H4 | 0.82 (2) |
| C2—O1 | 1.2006 (16) | O3—H5 | 0.78 (2) |
| C2—O2 | 1.3196 (15) | O2—H2 | 0.8200 |
| C2—C3 | 1.5223 (16) | C3—H3 | 0.9800 |
| N—C3 | 1.4893 (15) | ||
| C3—C1—H1A | 109.5 | C3—N—HC | 109.5 |
| C3—C1—H1B | 109.5 | HA—N—HC | 109.5 |
| H1A—C1—H1B | 109.5 | HB—N—HC | 109.5 |
| C3—C1—H1C | 109.5 | H4—O3—H5 | 104.4 (17) |
| H1A—C1—H1C | 109.5 | C2—O2—H2 | 109.5 |
| H1B—C1—H1C | 109.5 | N—C3—C1 | 110.50 (10) |
| O1—C2—O2 | 125.34 (11) | N—C3—C2 | 107.48 (9) |
| O1—C2—C3 | 123.71 (11) | C1—C3—C2 | 111.65 (11) |
| O2—C2—C3 | 110.95 (10) | N—C3—H3 | 109.1 |
| C3—N—HA | 109.5 | C1—C3—H3 | 109.1 |
| C3—N—HB | 109.5 | C2—C3—H3 | 109.1 |
| HA—N—HB | 109.5 | ||
| O1—C2—C3—N | −6.06 (18) | O1—C2—C3—C1 | 115.28 (14) |
| O2—C2—C3—N | 174.26 (9) | O2—C2—C3—C1 | −64.39 (14) |
| H··· | ||||
| N—HA···O3 | 0.89 | 1.96 | 2.8479 (14) | 174 |
| N—HB···Cli | 0.89 | 2.31 | 3.1957 (11) | 171 |
| N—HC···O3ii | 0.89 | 1.95 | 2.8380 (15) | 180 |
| O2—H2···Cl | 0.82 | 2.23 | 3.0446 (11) | 175 |
| O3—H4···Cliii | 0.82 (2) | 2.35 (2) | 3.1432 (12) | 161.0 (17) |
| O3—H5···Cliv | 0.78 (2) | 2.38 (2) | 3.1283 (11) | 163.3 (16) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N—H | 0.89 | 1.96 | 2.8479 (14) | 174 |
| N—H | 0.89 | 2.31 | 3.1957 (11) | 171 |
| N—H | 0.89 | 1.95 | 2.8380 (15) | 180 |
| O2—H2⋯Cl | 0.82 | 2.23 | 3.0446 (11) | 175 |
| O3—H4⋯Cliii | 0.82 (2) | 2.35 (2) | 3.1432 (12) | 161.0 (17) |
| O3—H5⋯Cliv | 0.78 (2) | 2.38 (2) | 3.1283 (11) | 163.3 (16) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .