Literature DB >> 21202297

l-Alanine hydrochloride monohydrate.

Kazuhiko Yamada, Akira Sato, Tadashi Shimizu, Toshio Yamazaki, Shigeyuki Yokoyama.   

Abstract

Colorless crystals of l-alanine hydrochloride monohydrate, C(3)H(8)NO(2) (+)·Cl(-)·H(2)O, were obtained from a powder sample that had been left standing in a refrigerator for a few years. The structure displays several inter-molecular hydrogen bonds: the hydroxyl O atom is involved in a single hydrogen bond to the chloride anion, while the ammonium group forms one hydrogen bond to the chloride anion and two hydrogen bonds to water mol-ecules. An intermolecular bond between the carbonyl O atom and the ammonium group [2.8459 (15) Å] is also found.

Entities:  

Year:  2008        PMID: 21202297      PMCID: PMC2961131          DOI: 10.1107/S1600536808008751

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of l-alanine and dl-alanine, see: Simpson & Marsh, (1966 ▶); Dunitz & Ryan, (1966 ▶); Lehmann et al. (1972 ▶); Destro et al. (1988 ▶); Donohue, (1950 ▶); Subha Nandhini et al. (2001 ▶). For the crystal structures of d-alanine hydro­chloride and dl-alanine hydro­chloride, see: di Blasio et al. (1977 ▶); Trotter, (1962 ▶). For the preparation of the title compound with respect to 17O-labelling, see: Steinschneider et al. (1981 ▶).

Experimental

Crystal data

C3H8NO2 +·Cl−·H2O M = 143.57 Orthorhombic, a = 6.1925 (13) Å b = 9.929 (2) Å c = 11.759 (3) Å V = 723.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.46 mm−1 T = 150 (2) K 0.45 × 0.40 × 0.35 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker 2001 ▶) T min = 0.819, T max = 0.855 5762 measured reflections 1467 independent reflections 1452 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.019 wR(F 2) = 0.053 S = 1.11 1467 reflections 84 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.20 e Å−3 Absolute structure: Flack (1983 ▶), 533 Friedel pairs Flack parameter: 0.02 (6) Data collection: SMART for WNT/2000 (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808008751/hg2382sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808008751/hg2382Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C3H8NO2+·Cl·H2OF000 = 304
Mr = 143.57Dx = 1.319 Mg m3
Orthorhombic, P212121Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 902 reflections
a = 6.1925 (13) Åθ = 7.4–53.9º
b = 9.929 (2) ŵ = 0.46 mm1
c = 11.759 (3) ÅT = 150 (2) K
V = 723.0 (3) Å3Plate, colourless
Z = 40.45 × 0.40 × 0.35 mm
Bruker SMART APEX CCD area-detector diffractometer1467 independent reflections
Radiation source: fine-focus sealed tube1452 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.022
T = 293(2) Kθmax = 27.0º
ω scansθmin = 2.7º
Absorption correction: multi-scan(SADABS; Bruker 2001)h = −7→7
Tmin = 0.819, Tmax = 0.855k = −11→12
5762 measured reflectionsl = −14→14
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.019  w = 1/[σ2(Fo2) + (0.0308P)2 + 0.0901P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.053(Δ/σ)max = 0.001
S = 1.11Δρmax = 0.19 e Å3
1467 reflectionsΔρmin = −0.20 e Å3
84 parametersExtinction correction: none
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 533 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.02 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl0.19971 (4)0.55991 (3)1.25180 (2)0.02475 (10)
C10.8057 (2)0.60202 (13)0.88317 (11)0.0295 (3)
H1A0.93010.61670.83600.044*
H1B0.74830.68720.90730.044*
H1C0.69790.55400.84070.044*
C20.6780 (2)0.49201 (12)1.06398 (10)0.0249 (2)
N0.96092 (17)0.38728 (10)0.95162 (8)0.0230 (2)
HA1.01160.34431.01240.034*
HB1.06760.40030.90210.034*
HC0.85770.33810.91930.034*
O31.13229 (15)0.26883 (10)1.15289 (8)0.0261 (2)
O10.60730 (17)0.38141 (9)1.08180 (8)0.0342 (2)
O20.60094 (18)0.60494 (10)1.10708 (9)0.0374 (2)
H20.49670.58801.14760.056*
C30.87031 (18)0.51981 (12)0.98686 (10)0.0228 (2)
H30.98010.56941.02990.027*
H41.159 (3)0.335 (2)1.1930 (16)0.047 (5)*
H51.050 (3)0.2271 (18)1.1882 (14)0.036 (5)*
U11U22U33U12U13U23
Cl0.02114 (14)0.02522 (15)0.02790 (15)0.00128 (9)0.00012 (12)−0.00516 (12)
C10.0308 (6)0.0239 (6)0.0337 (6)0.0021 (5)0.0026 (5)0.0073 (5)
C20.0260 (5)0.0230 (5)0.0256 (5)0.0013 (5)0.0015 (5)−0.0018 (5)
N0.0232 (5)0.0200 (5)0.0257 (5)0.0019 (4)0.0028 (4)0.0023 (4)
O30.0281 (5)0.0235 (4)0.0268 (5)−0.0044 (4)0.0023 (4)−0.0008 (4)
O10.0398 (5)0.0238 (4)0.0389 (5)−0.0059 (4)0.0160 (4)−0.0029 (4)
O20.0384 (5)0.0244 (4)0.0494 (6)0.0011 (4)0.0183 (5)−0.0046 (4)
C30.0227 (5)0.0183 (5)0.0274 (6)−0.0003 (4)0.0011 (5)−0.0002 (4)
C1—C31.5209 (17)N—HA0.8900
C1—H1A0.9600N—HB0.8900
C1—H1B0.9600N—HC0.8900
C1—H1C0.9600O3—H40.82 (2)
C2—O11.2006 (16)O3—H50.78 (2)
C2—O21.3196 (15)O2—H20.8200
C2—C31.5223 (16)C3—H30.9800
N—C31.4893 (15)
C3—C1—H1A109.5C3—N—HC109.5
C3—C1—H1B109.5HA—N—HC109.5
H1A—C1—H1B109.5HB—N—HC109.5
C3—C1—H1C109.5H4—O3—H5104.4 (17)
H1A—C1—H1C109.5C2—O2—H2109.5
H1B—C1—H1C109.5N—C3—C1110.50 (10)
O1—C2—O2125.34 (11)N—C3—C2107.48 (9)
O1—C2—C3123.71 (11)C1—C3—C2111.65 (11)
O2—C2—C3110.95 (10)N—C3—H3109.1
C3—N—HA109.5C1—C3—H3109.1
C3—N—HB109.5C2—C3—H3109.1
HA—N—HB109.5
O1—C2—C3—N−6.06 (18)O1—C2—C3—C1115.28 (14)
O2—C2—C3—N174.26 (9)O2—C2—C3—C1−64.39 (14)
D—H···AD—HH···AD···AD—H···A
N—HA···O30.891.962.8479 (14)174
N—HB···Cli0.892.313.1957 (11)171
N—HC···O3ii0.891.952.8380 (15)180
O2—H2···Cl0.822.233.0446 (11)175
O3—H4···Cliii0.82 (2)2.35 (2)3.1432 (12)161.0 (17)
O3—H5···Cliv0.78 (2)2.38 (2)3.1283 (11)163.3 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N—HA⋯O30.891.962.8479 (14)174
N—HB⋯Cli0.892.313.1957 (11)171
N—HC⋯O3ii0.891.952.8380 (15)180
O2—H2⋯Cl0.822.233.0446 (11)175
O3—H4⋯Cliii0.82 (2)2.35 (2)3.1432 (12)161.0 (17)
O3—H5⋯Cliv0.78 (2)2.38 (2)3.1283 (11)163.3 (16)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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