Literature DB >> 22719608

(1E,2E)-2-Methyl-3-phenyl-acryl-aldehyde thio-semicarbazone.

Rafael Mendoza-Meroño1, Santiago García-Granda.   

Abstract

In the crystal structure of the title compound, C(11)H(13)N(3)S, mol-ecules form centrosymmetric synthons with an R(2) (2)(8) graph-set motif, linked by pairs of N-H⋯S hydrogen bonds. The synthons are connected through further N-H⋯S hydrogen bonds, extending the packing to form a two-dimensional network lying parallel to (001). In addition, C-H⋯π inter-actions are observed.

Entities:  

Year:  2012        PMID: 22719608      PMCID: PMC3379410          DOI: 10.1107/S1600536812022386

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds and their biological activity, see: Abid et al. (2008 ▶); Finkielsztein et al. (2008 ▶). For hydrogen bonding in thio­semicarbazones, see: Lima et al. (2002 ▶); Allen et al. (1997 ▶). For the use of resonance-induced hydrogen bonding in supra­molecular chemistry, see: Kearney et al. (1998 ▶). For hydrogen-bond motifs, see Bernstein et al. (1995 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C11H13N3S M = 219.30 Orthorhombic, a = 10.9165 (5) Å b = 7.8150 (3) Å c = 28.0390 (14) Å V = 2392.08 (19) Å3 Z = 8 Cu Kα radiation μ = 2.17 mm−1 T = 293 K 0.51 × 0.06 × 0.04 mm

Data collection

Oxford Diffraction Xcalibur Ruby Gemini diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010 ▶) T min = 0.763, T max = 1.000 6973 measured reflections 2241 independent reflections 1644 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.110 S = 1.04 2241 reflections 188 parameters All H-atom parameters refined Δρmax = 0.20 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2010 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶), PLATON (Spek, 2009 ▶), PARST95 (Nardelli, 1995 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812022386/ff2068sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812022386/ff2068Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812022386/ff2068Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H13N3SF(000) = 928
Mr = 219.30Dx = 1.218 Mg m3
Orthorhombic, PbcaCu Kα radiation, λ = 1.54180 Å
Hall symbol: -P 2ac 2abCell parameters from 1905 reflections
a = 10.9165 (5) Åθ = 4.1–70.4°
b = 7.8150 (3) ŵ = 2.17 mm1
c = 28.0390 (14) ÅT = 293 K
V = 2392.08 (19) Å3Plates, white
Z = 80.51 × 0.06 × 0.04 mm
Oxford Diffraction Xcalibur Ruby Gemini diffractometer2241 independent reflections
Radiation source: Enhance (Cu) X-ray Source1644 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.037
Detector resolution: 10.2673 pixels mm-1θmax = 70.5°, θmin = 5.1°
ω scansh = −9→13
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)k = −9→8
Tmin = 0.763, Tmax = 1.000l = −25→34
6973 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110All H-atom parameters refined
S = 1.04w = 1/[σ2(Fo2) + (0.0544P)2 + 0.029P] where P = (Fo2 + 2Fc2)/3
2241 reflections(Δ/σ)max < 0.001
188 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.15 e Å3
Experimental. Absorption correction: CrysAlis RED (Oxford Diffraction, 2010), Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.33592 (5)0.16055 (7)0.01929 (2)0.0596 (2)
N20.37558 (17)0.4229 (2)−0.03717 (7)0.0586 (5)
N10.44022 (15)0.5101 (2)−0.07187 (6)0.0561 (4)
C110.41598 (18)0.2686 (2)−0.02261 (7)0.0511 (5)
C70.4125 (2)0.9191 (3)−0.12626 (8)0.0584 (5)
N30.51732 (19)0.2120 (3)−0.04238 (9)0.0692 (6)
C100.4010 (2)0.6596 (3)−0.08224 (8)0.0564 (5)
C80.46045 (18)0.7642 (3)−0.11791 (7)0.0541 (5)
C60.4535 (2)1.0540 (3)−0.15896 (7)0.0573 (5)
C50.3674 (3)1.1629 (3)−0.17910 (10)0.0713 (6)
C10.5758 (2)1.0833 (4)−0.17014 (10)0.0727 (7)
C90.5700 (3)0.6891 (4)−0.14221 (11)0.0764 (7)
C40.4017 (3)1.2909 (4)−0.21045 (11)0.0848 (8)
C30.5221 (3)1.3141 (4)−0.22186 (11)0.0890 (9)
C20.6085 (3)1.2116 (4)−0.20136 (11)0.0883 (9)
H110.311 (2)0.471 (3)−0.0232 (8)0.067 (7)*
H12A0.557 (2)0.274 (3)−0.0641 (10)0.082 (8)*
H70.339 (2)0.944 (3)−0.1080 (9)0.069 (7)*
H100.332 (2)0.702 (3)−0.0649 (8)0.059 (6)*
H9C0.641 (3)0.715 (4)−0.1228 (13)0.114 (12)*
H50.285 (2)1.146 (3)−0.1724 (9)0.081 (8)*
H9B0.581 (2)0.740 (3)−0.1745 (11)0.089 (8)*
H9A0.562 (3)0.579 (5)−0.1461 (12)0.125 (13)*
H10.635 (2)1.014 (3)−0.1560 (9)0.076 (8)*
H20.690 (3)1.220 (4)−0.2086 (11)0.100 (10)*
H12B0.546 (3)0.116 (4)−0.0339 (9)0.080 (8)*
H40.341 (2)1.358 (4)−0.2224 (10)0.090 (9)*
H30.541 (3)1.403 (4)−0.2441 (11)0.098 (9)*
U11U22U33U12U13U23
S10.0531 (3)0.0536 (3)0.0720 (4)−0.0009 (2)−0.0050 (3)0.0083 (3)
N20.0521 (10)0.0481 (9)0.0756 (12)0.0041 (8)0.0070 (9)0.0064 (9)
N10.0550 (9)0.0481 (9)0.0652 (10)−0.0033 (8)0.0018 (9)0.0002 (8)
C110.0478 (10)0.0436 (10)0.0621 (12)−0.0031 (8)−0.0106 (10)−0.0031 (9)
C70.0551 (12)0.0570 (12)0.0630 (13)−0.0016 (10)0.0047 (11)0.0018 (10)
N30.0636 (12)0.0543 (11)0.0898 (15)0.0106 (10)0.0142 (11)0.0096 (11)
C100.0531 (11)0.0504 (11)0.0656 (13)0.0009 (10)0.0041 (10)0.0010 (10)
C80.0543 (11)0.0526 (11)0.0553 (11)−0.0041 (9)−0.0007 (9)−0.0026 (10)
C60.0696 (13)0.0494 (11)0.0528 (11)−0.0034 (10)−0.0004 (10)−0.0014 (9)
C50.0783 (16)0.0580 (13)0.0776 (16)0.0026 (13)−0.0002 (13)0.0036 (12)
C10.0691 (15)0.0744 (16)0.0744 (15)−0.0148 (13)−0.0067 (13)0.0121 (13)
C90.088 (2)0.0678 (17)0.0732 (17)0.0101 (15)0.0213 (16)−0.0001 (14)
C40.109 (2)0.0639 (15)0.0818 (18)0.0019 (16)−0.0199 (18)0.0136 (14)
C30.123 (3)0.0752 (17)0.0687 (16)−0.0288 (18)−0.0133 (17)0.0170 (14)
C20.088 (2)0.095 (2)0.0817 (18)−0.0314 (17)0.0004 (17)0.0151 (16)
S1—C111.690 (2)C6—C51.388 (3)
N2—C111.347 (3)C6—C11.390 (3)
N2—N11.381 (2)C5—C41.384 (4)
N2—H110.89 (2)C5—H50.93 (3)
N1—C101.278 (3)C1—C21.378 (4)
C11—N31.314 (3)C1—H10.93 (3)
C7—C81.339 (3)C9—H9C0.97 (3)
C7—C61.467 (3)C9—H9B1.00 (3)
C7—H70.97 (2)C9—H9A0.87 (4)
N3—H12A0.89 (3)C4—C31.364 (5)
N3—H12B0.85 (3)C4—H40.91 (3)
C10—C81.446 (3)C3—C21.365 (4)
C10—H100.96 (2)C3—H30.96 (3)
C8—C91.497 (3)C2—H20.92 (3)
C11—N2—N1119.17 (18)C4—C5—C6121.2 (3)
C11—N2—H11120.1 (15)C4—C5—H5119.7 (17)
N1—N2—H11120.5 (15)C6—C5—H5119.1 (16)
C10—N1—N2116.09 (17)C2—C1—C6120.8 (3)
N3—C11—N2116.7 (2)C2—C1—H1120.9 (16)
N3—C11—S1124.07 (17)C6—C1—H1118.3 (16)
N2—C11—S1119.25 (16)C8—C9—H9C108 (2)
C8—C7—C6129.7 (2)C8—C9—H9B110.5 (16)
C8—C7—H7114.3 (14)H9C—C9—H9B109 (3)
C6—C7—H7116.0 (14)C8—C9—H9A111 (2)
C11—N3—H12A121.2 (17)H9C—C9—H9A111 (3)
C11—N3—H12B119.2 (18)H9B—C9—H9A107 (3)
H12A—N3—H12B120 (3)C3—C4—C5120.4 (3)
N1—C10—C8121.6 (2)C3—C4—H4122.7 (18)
N1—C10—H10117.6 (13)C5—C4—H4116.9 (18)
C8—C10—H10120.7 (13)C2—C3—C4119.3 (3)
C7—C8—C10117.15 (19)C2—C3—H3123.5 (18)
C7—C8—C9126.0 (2)C4—C3—H3117.3 (18)
C10—C8—C9116.9 (2)C3—C2—C1121.1 (3)
C5—C6—C1117.2 (2)C3—C2—H2122.4 (19)
C5—C6—C7119.2 (2)C1—C2—H2116 (2)
C1—C6—C7123.5 (2)
C11—N2—N1—C10−176.32 (19)C8—C7—C6—C5149.4 (2)
N1—N2—C11—N31.0 (3)C8—C7—C6—C1−32.5 (4)
N1—N2—C11—N31.0 (3)C1—C6—C5—C42.4 (4)
N1—N2—C11—S1−179.15 (14)C7—C6—C5—C4−179.4 (2)
N1—N2—C11—S1−179.15 (14)C5—C6—C1—C2−2.3 (4)
N2—N1—C10—C8179.95 (18)C7—C6—C1—C2179.6 (2)
C6—C7—C8—C10178.3 (2)C6—C5—C4—C3−0.8 (4)
C6—C7—C8—C9−1.8 (4)C5—C4—C3—C2−1.1 (5)
N1—C10—C8—C7180.0 (2)C4—C3—C2—C11.3 (5)
N1—C10—C8—C90.1 (3)C6—C1—C2—C30.5 (5)
D—H···AD—HH···AD···AD—H···A
N2—H11···S1i0.89 (2)2.49 (3)3.359 (2)167 (2)
N3—H12B···S1ii0.85 (3)2.55 (3)3.386 (2)169 (2)
C3—H3···Cg1iii0.96 (3)2.89 (3)3.812 (3)161 (3)
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H11⋯S1i0.89 (2)2.49 (3)3.359 (2)167 (2)
N3—H12B⋯S1ii0.85 (3)2.55 (3)3.386 (2)169 (2)
C3—H3⋯Cg1iii0.96 (3)2.89 (3)3.812 (3)161 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

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