| Literature DB >> 22719608 |
Rafael Mendoza-Meroño1, Santiago García-Granda.
Abstract
In the crystal structure of the title compound, C(11)H(13)N(3)S, mol-ecules form centrosymmetric synthons with an R(2) (2)(8) graph-set motif, linked by pairs of N-H⋯S hydrogen bonds. The synthons are connected through further N-H⋯S hydrogen bonds, extending the packing to form a two-dimensional network lying parallel to (001). In addition, C-H⋯π inter-actions are observed.Entities:
Year: 2012 PMID: 22719608 PMCID: PMC3379410 DOI: 10.1107/S1600536812022386
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H13N3S | |
| Orthorhombic, | Cu |
| Hall symbol: -P 2ac 2ab | Cell parameters from 1905 reflections |
| θ = 4.1–70.4° | |
| µ = 2.17 mm−1 | |
| Plates, white | |
| 0.51 × 0.06 × 0.04 mm |
| Oxford Diffraction Xcalibur Ruby Gemini diffractometer | 2241 independent reflections |
| Radiation source: Enhance (Cu) X-ray Source | 1644 reflections with |
| Graphite monochromator | |
| Detector resolution: 10.2673 pixels mm-1 | θmax = 70.5°, θmin = 5.1° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 6973 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| All H-atom parameters refined | |
| 2241 reflections | (Δ/σ)max < 0.001 |
| 188 parameters | Δρmax = 0.20 e Å−3 |
| 0 restraints | Δρmin = −0.15 e Å−3 |
| Experimental. Absorption correction: CrysAlis RED (Oxford Diffraction, 2010), Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| S1 | 0.33592 (5) | 0.16055 (7) | 0.01929 (2) | 0.0596 (2) | |
| N2 | 0.37558 (17) | 0.4229 (2) | −0.03717 (7) | 0.0586 (5) | |
| N1 | 0.44022 (15) | 0.5101 (2) | −0.07187 (6) | 0.0561 (4) | |
| C11 | 0.41598 (18) | 0.2686 (2) | −0.02261 (7) | 0.0511 (5) | |
| C7 | 0.4125 (2) | 0.9191 (3) | −0.12626 (8) | 0.0584 (5) | |
| N3 | 0.51732 (19) | 0.2120 (3) | −0.04238 (9) | 0.0692 (6) | |
| C10 | 0.4010 (2) | 0.6596 (3) | −0.08224 (8) | 0.0564 (5) | |
| C8 | 0.46045 (18) | 0.7642 (3) | −0.11791 (7) | 0.0541 (5) | |
| C6 | 0.4535 (2) | 1.0540 (3) | −0.15896 (7) | 0.0573 (5) | |
| C5 | 0.3674 (3) | 1.1629 (3) | −0.17910 (10) | 0.0713 (6) | |
| C1 | 0.5758 (2) | 1.0833 (4) | −0.17014 (10) | 0.0727 (7) | |
| C9 | 0.5700 (3) | 0.6891 (4) | −0.14221 (11) | 0.0764 (7) | |
| C4 | 0.4017 (3) | 1.2909 (4) | −0.21045 (11) | 0.0848 (8) | |
| C3 | 0.5221 (3) | 1.3141 (4) | −0.22186 (11) | 0.0890 (9) | |
| C2 | 0.6085 (3) | 1.2116 (4) | −0.20136 (11) | 0.0883 (9) | |
| H11 | 0.311 (2) | 0.471 (3) | −0.0232 (8) | 0.067 (7)* | |
| H12A | 0.557 (2) | 0.274 (3) | −0.0641 (10) | 0.082 (8)* | |
| H7 | 0.339 (2) | 0.944 (3) | −0.1080 (9) | 0.069 (7)* | |
| H10 | 0.332 (2) | 0.702 (3) | −0.0649 (8) | 0.059 (6)* | |
| H9C | 0.641 (3) | 0.715 (4) | −0.1228 (13) | 0.114 (12)* | |
| H5 | 0.285 (2) | 1.146 (3) | −0.1724 (9) | 0.081 (8)* | |
| H9B | 0.581 (2) | 0.740 (3) | −0.1745 (11) | 0.089 (8)* | |
| H9A | 0.562 (3) | 0.579 (5) | −0.1461 (12) | 0.125 (13)* | |
| H1 | 0.635 (2) | 1.014 (3) | −0.1560 (9) | 0.076 (8)* | |
| H2 | 0.690 (3) | 1.220 (4) | −0.2086 (11) | 0.100 (10)* | |
| H12B | 0.546 (3) | 0.116 (4) | −0.0339 (9) | 0.080 (8)* | |
| H4 | 0.341 (2) | 1.358 (4) | −0.2224 (10) | 0.090 (9)* | |
| H3 | 0.541 (3) | 1.403 (4) | −0.2441 (11) | 0.098 (9)* |
| S1 | 0.0531 (3) | 0.0536 (3) | 0.0720 (4) | −0.0009 (2) | −0.0050 (3) | 0.0083 (3) |
| N2 | 0.0521 (10) | 0.0481 (9) | 0.0756 (12) | 0.0041 (8) | 0.0070 (9) | 0.0064 (9) |
| N1 | 0.0550 (9) | 0.0481 (9) | 0.0652 (10) | −0.0033 (8) | 0.0018 (9) | 0.0002 (8) |
| C11 | 0.0478 (10) | 0.0436 (10) | 0.0621 (12) | −0.0031 (8) | −0.0106 (10) | −0.0031 (9) |
| C7 | 0.0551 (12) | 0.0570 (12) | 0.0630 (13) | −0.0016 (10) | 0.0047 (11) | 0.0018 (10) |
| N3 | 0.0636 (12) | 0.0543 (11) | 0.0898 (15) | 0.0106 (10) | 0.0142 (11) | 0.0096 (11) |
| C10 | 0.0531 (11) | 0.0504 (11) | 0.0656 (13) | 0.0009 (10) | 0.0041 (10) | 0.0010 (10) |
| C8 | 0.0543 (11) | 0.0526 (11) | 0.0553 (11) | −0.0041 (9) | −0.0007 (9) | −0.0026 (10) |
| C6 | 0.0696 (13) | 0.0494 (11) | 0.0528 (11) | −0.0034 (10) | −0.0004 (10) | −0.0014 (9) |
| C5 | 0.0783 (16) | 0.0580 (13) | 0.0776 (16) | 0.0026 (13) | −0.0002 (13) | 0.0036 (12) |
| C1 | 0.0691 (15) | 0.0744 (16) | 0.0744 (15) | −0.0148 (13) | −0.0067 (13) | 0.0121 (13) |
| C9 | 0.088 (2) | 0.0678 (17) | 0.0732 (17) | 0.0101 (15) | 0.0213 (16) | −0.0001 (14) |
| C4 | 0.109 (2) | 0.0639 (15) | 0.0818 (18) | 0.0019 (16) | −0.0199 (18) | 0.0136 (14) |
| C3 | 0.123 (3) | 0.0752 (17) | 0.0687 (16) | −0.0288 (18) | −0.0133 (17) | 0.0170 (14) |
| C2 | 0.088 (2) | 0.095 (2) | 0.0817 (18) | −0.0314 (17) | 0.0004 (17) | 0.0151 (16) |
| S1—C11 | 1.690 (2) | C6—C5 | 1.388 (3) |
| N2—C11 | 1.347 (3) | C6—C1 | 1.390 (3) |
| N2—N1 | 1.381 (2) | C5—C4 | 1.384 (4) |
| N2—H11 | 0.89 (2) | C5—H5 | 0.93 (3) |
| N1—C10 | 1.278 (3) | C1—C2 | 1.378 (4) |
| C11—N3 | 1.314 (3) | C1—H1 | 0.93 (3) |
| C7—C8 | 1.339 (3) | C9—H9C | 0.97 (3) |
| C7—C6 | 1.467 (3) | C9—H9B | 1.00 (3) |
| C7—H7 | 0.97 (2) | C9—H9A | 0.87 (4) |
| N3—H12A | 0.89 (3) | C4—C3 | 1.364 (5) |
| N3—H12B | 0.85 (3) | C4—H4 | 0.91 (3) |
| C10—C8 | 1.446 (3) | C3—C2 | 1.365 (4) |
| C10—H10 | 0.96 (2) | C3—H3 | 0.96 (3) |
| C8—C9 | 1.497 (3) | C2—H2 | 0.92 (3) |
| C11—N2—N1 | 119.17 (18) | C4—C5—C6 | 121.2 (3) |
| C11—N2—H11 | 120.1 (15) | C4—C5—H5 | 119.7 (17) |
| N1—N2—H11 | 120.5 (15) | C6—C5—H5 | 119.1 (16) |
| C10—N1—N2 | 116.09 (17) | C2—C1—C6 | 120.8 (3) |
| N3—C11—N2 | 116.7 (2) | C2—C1—H1 | 120.9 (16) |
| N3—C11—S1 | 124.07 (17) | C6—C1—H1 | 118.3 (16) |
| N2—C11—S1 | 119.25 (16) | C8—C9—H9C | 108 (2) |
| C8—C7—C6 | 129.7 (2) | C8—C9—H9B | 110.5 (16) |
| C8—C7—H7 | 114.3 (14) | H9C—C9—H9B | 109 (3) |
| C6—C7—H7 | 116.0 (14) | C8—C9—H9A | 111 (2) |
| C11—N3—H12A | 121.2 (17) | H9C—C9—H9A | 111 (3) |
| C11—N3—H12B | 119.2 (18) | H9B—C9—H9A | 107 (3) |
| H12A—N3—H12B | 120 (3) | C3—C4—C5 | 120.4 (3) |
| N1—C10—C8 | 121.6 (2) | C3—C4—H4 | 122.7 (18) |
| N1—C10—H10 | 117.6 (13) | C5—C4—H4 | 116.9 (18) |
| C8—C10—H10 | 120.7 (13) | C2—C3—C4 | 119.3 (3) |
| C7—C8—C10 | 117.15 (19) | C2—C3—H3 | 123.5 (18) |
| C7—C8—C9 | 126.0 (2) | C4—C3—H3 | 117.3 (18) |
| C10—C8—C9 | 116.9 (2) | C3—C2—C1 | 121.1 (3) |
| C5—C6—C1 | 117.2 (2) | C3—C2—H2 | 122.4 (19) |
| C5—C6—C7 | 119.2 (2) | C1—C2—H2 | 116 (2) |
| C1—C6—C7 | 123.5 (2) | ||
| C11—N2—N1—C10 | −176.32 (19) | C8—C7—C6—C5 | 149.4 (2) |
| N1—N2—C11—N3 | 1.0 (3) | C8—C7—C6—C1 | −32.5 (4) |
| N1—N2—C11—N3 | 1.0 (3) | C1—C6—C5—C4 | 2.4 (4) |
| N1—N2—C11—S1 | −179.15 (14) | C7—C6—C5—C4 | −179.4 (2) |
| N1—N2—C11—S1 | −179.15 (14) | C5—C6—C1—C2 | −2.3 (4) |
| N2—N1—C10—C8 | 179.95 (18) | C7—C6—C1—C2 | 179.6 (2) |
| C6—C7—C8—C10 | 178.3 (2) | C6—C5—C4—C3 | −0.8 (4) |
| C6—C7—C8—C9 | −1.8 (4) | C5—C4—C3—C2 | −1.1 (5) |
| N1—C10—C8—C7 | 180.0 (2) | C4—C3—C2—C1 | 1.3 (5) |
| N1—C10—C8—C9 | 0.1 (3) | C6—C1—C2—C3 | 0.5 (5) |
| H··· | ||||
| N2—H11···S1i | 0.89 (2) | 2.49 (3) | 3.359 (2) | 167 (2) |
| N3—H12 | 0.85 (3) | 2.55 (3) | 3.386 (2) | 169 (2) |
| C3—H3··· | 0.96 (3) | 2.89 (3) | 3.812 (3) | 161 (3) |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C1–C6 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N2—H11⋯S1i | 0.89 (2) | 2.49 (3) | 3.359 (2) | 167 (2) |
| N3—H12 | 0.85 (3) | 2.55 (3) | 3.386 (2) | 169 (2) |
| C3—H3⋯ | 0.96 (3) | 2.89 (3) | 3.812 (3) | 161 (3) |
Symmetry codes: (i) ; (ii) ; (iii) .